mod pandemic;
use geom::{Duration, Time};
pub use pandemic::{Cmd, PandemicModel};
use rand::Rng;
use rand_distr::{Distribution, Exp, Normal};
use rand_xorshift::XorShiftRng;
use std::ops;
#[derive(Clone, Copy, Debug, PartialEq, PartialOrd)]
pub struct AnyTime(f64);
impl AnyTime {
fn inner_seconds(&self) -> f64 {
self.0
}
pub fn is_finite(&self) -> bool {
self.0.is_finite()
}
}
impl ops::Add<Duration> for AnyTime {
type Output = AnyTime;
fn add(self, other: Duration) -> AnyTime {
AnyTime(self.0 + other.inner_seconds())
}
}
impl ops::AddAssign<Duration> for AnyTime {
fn add_assign(&mut self, other: Duration) {
*self = *self + other;
}
}
impl ops::Sub<Duration> for AnyTime {
type Output = AnyTime;
fn sub(self, other: Duration) -> AnyTime {
AnyTime(self.0 - other.inner_seconds())
}
}
impl ops::Sub for AnyTime {
type Output = Duration;
fn sub(self, other: AnyTime) -> Duration {
Duration::seconds(self.0 - other.0)
}
}
impl From<Time> for AnyTime {
fn from(t: Time) -> AnyTime {
AnyTime(t.inner_seconds())
}
}
impl Into<Time> for AnyTime {
fn into(self) -> Time {
Time::START_OF_DAY + Duration::seconds(self.inner_seconds())
}
}
impl From<f64> for AnyTime {
fn from(t: f64) -> AnyTime {
AnyTime(t)
}
}
#[derive(Debug, Clone)]
pub enum StateEvent {
Exposition,
Incubation,
Hospitalization,
Recovery,
Death,
}
#[derive(Debug, Clone)]
pub struct Event {
s: StateEvent,
p_hosp: f64,
p_death: f64,
t: AnyTime,
}
impl Event {
fn next(&self, now: AnyTime, rng: &mut XorShiftRng) -> State {
match self.s {
StateEvent::Exposition => State::Exposed((
Event {
s: StateEvent::Incubation,
p_hosp: self.p_hosp,
p_death: self.p_death,
t: now + State::get_time_normal(State::T_INC, State::T_INC / 2.0, rng),
},
now.into(),
)),
StateEvent::Incubation => {
if rng.gen_bool(self.p_death) {
State::Infectious((
Event {
s: StateEvent::Recovery,
p_hosp: self.p_hosp,
p_death: self.p_death,
t: now + State::get_time_normal(State::T_INF, State::T_INF / 2.0, rng),
},
now.into(),
))
} else {
State::Infectious((
Event {
s: StateEvent::Hospitalization,
p_hosp: self.p_hosp,
p_death: self.p_death,
t: now + State::get_time_normal(State::T_INF, State::T_INF / 2.0, rng),
},
now.into(),
))
}
}
StateEvent::Hospitalization => {
if rng.gen_bool(self.p_hosp) {
State::Hospitalized((
Event {
s: StateEvent::Recovery,
p_hosp: self.p_hosp,
p_death: self.p_death,
t: now + State::get_time_normal(State::T_INF, State::T_INF / 2.0, rng),
},
now.into(),
))
} else {
State::Hospitalized((
Event {
s: StateEvent::Death,
p_hosp: self.p_hosp,
p_death: self.p_death,
t: now + State::get_time_normal(State::T_INF, State::T_INF / 2.0, rng),
},
now.into(),
))
}
}
StateEvent::Death => State::Dead(now.into()),
StateEvent::Recovery => State::Recovered(now.into()),
}
}
}
#[derive(Debug, Clone)]
pub enum State {
Sane((Event, Time)),
Exposed((Event, Time)),
Infectious((Event, Time)),
Hospitalized((Event, Time)),
Recovered(Time),
Dead(Time),
}
impl State {
const T_INF: f64 = 360.0 * 10.0;
const T_INC: f64 = 3600.0;
const R_0: f64 = 2.5;
const E_RATIO: f64 = 0.01;
const I_RATIO: f64 = 0.05;
pub fn ini_infectious_ratio() -> f64 {
Self::I_RATIO
}
pub fn ini_exposed_ratio() -> f64 {
Self::E_RATIO
}
fn new(p_hosp: f64, p_death: f64) -> Self {
Self::Sane((
Event {
s: StateEvent::Exposition,
p_hosp,
p_death,
t: AnyTime::from(std::f64::INFINITY),
},
Time::START_OF_DAY,
))
}
fn get_time_exp(lambda: f64, rng: &mut XorShiftRng) -> geom::Duration {
let normal = Exp::new(lambda).unwrap();
Duration::seconds(normal.sample(rng))
}
fn get_time_normal(mu: f64, sigma: f64, rng: &mut XorShiftRng) -> geom::Duration {
let normal = Normal::new(mu, sigma).unwrap();
Duration::seconds(normal.sample(rng))
}
fn is_sane(&self) -> bool {
match self {
State::Sane((ev, _)) => !ev.t.is_finite(),
_ => false,
}
}
fn is_exposed(&self) -> bool {
match self {
State::Exposed(_) => true,
_ => false,
}
}
fn is_infectious(&self) -> bool {
match self {
State::Infectious(_) | State::Hospitalized(_) => true,
_ => false,
}
}
fn is_recovered(&self) -> bool {
match self {
State::Recovered(_) => true,
_ => false,
}
}
fn is_dead(&self) -> bool {
match self {
State::Dead(_) => true,
_ => false,
}
}
pub fn get_time(&self) -> Option<Time> {
match self {
Self::Sane(_) => None,
Self::Recovered(t)
| Self::Dead(t)
| Self::Exposed((_, t))
| Self::Infectious((_, t))
| Self::Hospitalized((_, t)) => Some(*t),
}
}
pub fn get_event_time(&self) -> Option<AnyTime> {
match self {
Self::Sane((ev, _))
| Self::Exposed((ev, _))
| Self::Infectious((ev, _))
| Self::Hospitalized((ev, _)) => Some(ev.t),
Self::Recovered(_) | Self::Dead(_) => None,
}
}
pub fn next_default(self, default: AnyTime, rng: &mut XorShiftRng) -> Option<Self> {
match self {
Self::Sane((ev, _)) => Some(Self::Sane((ev, default.into()))),
Self::Exposed((ev, _)) => Some(ev.next(default, rng)),
Self::Infectious((ev, _)) => Some(ev.next(default, rng)),
Self::Hospitalized((ev, _)) => Some(ev.next(default, rng)),
Self::Recovered(_) => Some(Self::Recovered(default.into())),
Self::Dead(_) => Some(Self::Dead(default.into())),
}
}
pub fn next(self, now: AnyTime, rng: &mut XorShiftRng) -> Option<Self> {
match self {
Self::Sane((ev, t)) => Some(Self::Sane((ev, t))),
Self::Exposed((ev, t)) => {
if ev.t <= now {
Some(ev.next(now, rng))
} else {
Some(Self::Exposed((ev, t)))
}
}
Self::Infectious((ev, t)) => {
if ev.t <= now {
Some(ev.next(now, rng))
} else {
Some(Self::Infectious((ev, t)))
}
}
Self::Hospitalized((ev, t)) => {
if ev.t <= now {
Some(ev.next(now, rng))
} else {
Some(Self::Hospitalized((ev, t)))
}
}
Self::Recovered(t) => Some(Self::Recovered(t)),
Self::Dead(t) => Some(Self::Dead(t)),
}
}
pub fn start(
self,
now: AnyTime,
overlap: Duration,
rng: &mut XorShiftRng,
) -> Result<Self, String> {
match self {
Self::Sane((ev, t)) => {
if overlap >= Self::get_time_exp(State::R_0 / State::T_INF, rng) {
Ok(ev.next(now, rng))
} else {
Ok(Self::Sane((ev, t)))
}
}
_ => Err(String::from(
"Error: impossible to start from a non-sane situation.",
)),
}
}
}