With the --yaffle flag, you get the old behaviour which is to invoke the
checker for the core theory (and all the tests are updated appropriately
for this).
This slows things down a bit because to find the holes and give them the
right multiplicities, we need to normalise all the arguments which might
have been metavariables. Maybe we should skip this if we're not using
anything linear, for efficiency?
As patterns are handled by deciding which side of the as is considered
'used'. In case blocks, that should be the variable name, but in general
it should be the pattern, so IAs now has a flag to say which one.
Need to record which holes are still to be solved (not counting
elaborations where there are user defined holes) and check at the end
that they are now solved.