Do not invalidate caches when building engine distribution (#7106)

There is an issue that after a clean build, the compiler is unable to resolve some types, i.e
```py
$ ./built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/bin/enso --run ~/enso/projects/Unnamed/

/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:24:11: error: The name `Connection_Details` could not be found.
24 | connect : Connection_Details -> Connection_Options -> Connection ! SQL_Error
|           ^~~~~~~~~~~~~~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:24:33: error: The name `Connection_Options` could not be found.
24 | connect : Connection_Details -> Connection_Options -> Connection ! SQL_Error
|                                 ^~~~~~~~~~~~~~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:24:55: error: The name `Connection` could not be found.
24 | connect : Connection_Details -> Connection_Options -> Connection ! SQL_Error
|                                                       ^~~~~~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:24:68: error: The name `SQL_Error` could not be found.
24 | connect : Connection_Details -> Connection_Options -> Connection ! SQL_Error
|                                                                    ^~~~~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:25:25: error: The name `Connection_Options` could not be found.
25 | connect details options=Connection_Options.Value =
|                         ^~~~~~~~~~~~~~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:29:29: error: The name `Widget` could not be found.
29 | connection_details_widget : Widget
|                             ^~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:31:28: error: The name `Vector` could not be found.
31 |     default_constructors = Vector.from_polyglot_array <|
|                            ^~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:32:63: error: The name `False` could not be found.
32 |         DatabaseConnectionDetailsSPI.get_default_constructors False
|                                                               ^~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:36:9: error: The name `Option` could not be found.
36 |         Option name code
|         ^~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:37:5: error: The name `Single_Choice` could not be found.
37 |     Single_Choice display=Display.Always values=choices
|     ^~~~~~~~~~~~~
/home/dbushev/projects/luna/enso/built-distribution/enso-engine-0.0.0-dev-linux-amd64/enso-0.0.0-dev/lib/Standard/Database/0.0.0-dev/src/Connection/Database.enso:37:27: error: The name `Display` could not be found.
37 |     Single_Choice display=Display.Always values=choices
|                           ^~~~~~~
Aborting due to 11 errors and 0 warnings.
Execution finished with an error: Compilation aborted due to errors.
```

The compiler can't resolve those symbols because the `IR` cache for `Standard.Database.Connection.Database` is missing. What happens during the `buildEngineDistribution` is:

- Compiler processes libraries one by one
- Compiler processes (and compiles and generates caches) `Standard.Database` library
- Compiler starts processing `Standard.Visualization` library
- During the compilation of `Standard.Database.Connection.Database` module, it sees that the module was loaded from the cache. But some of the required dependencies from `Standard.Table` library were not loaded from the cache. But at this point, the `Standard.Table` library has not been processed yet and the caches for it don't exist. The compiler decides that the `Database` file was changed, and the cache is invalid and should be cleaned.

engine/runtime/src/main/scala/org/enso/compiler/Compiler.scala

@@ -268,22 +268,31 @@ class Compiler(
     modules.foreach(m => parseModule(m))
 
     var requiredModules = modules.flatMap { module =>
-      val modules = runImportsAndExportsResolution(module, generateCode)
+      val importedModules = runImportsAndExportsResolution(module, generateCode)
+      val isLoadedFromSource =
+        (m: Module) => !m.wasLoadedFromCache() && !m.isSynthetic
       if (
-        module
-          .wasLoadedFromCache() && modules
-          .exists(m => !m.wasLoadedFromCache() && !m.isSynthetic)
+        shouldCompileDependencies &&
+        module.wasLoadedFromCache() &&
+        importedModules.exists(isLoadedFromSource)
       ) {
+        val importedModulesLoadedFromSource = importedModules
+          .filter(isLoadedFromSource)
+          .map(_.getName)
         logger.log(
           Compiler.defaultLogLevel,
-          "Some imported modules' caches were invalided, forcing invalidation of {0}",
-          module.getName.toString
+          "{0} imported module caches were invalided, forcing invalidation of {1}. [{2}]",
+          Array(
+            importedModulesLoadedFromSource.length,
+            module.getName.toString,
+            importedModulesLoadedFromSource.take(10).mkString("", ",", "...")
+          )
         )
         module.getCache.invalidate(context)
         parseModule(module)
         runImportsAndExportsResolution(module, generateCode)
       } else {
-        modules
+        importedModules
       }
     }.distinct