Register instruments/language in their own compilation units to fix the sbt build issues (#3509)

New plan to [fix the `sbt` build](https://www.pivotaltracker.com/n/projects/2539304/stories/182209126) and its annoying:
```
log.error(
"Truffle Instrumentation is not up to date, " +
"which will lead to runtime errors\n" +
"Fixes have been applied to ensure consistent Instrumentation state, " +
"but compilation has to be triggered again.\n" +
"Please re-run the previous command.\n" +
"(If this for some reason fails, " +
s"please do a clean build of the $projectName project)"
)
```
When it is hard to fix `sbt` incremental compilation, let's restructure our project sources so that each `@TruffleInstrument` and `@TruffleLanguage` registration is in individual compilation unit. Each such unit is either going to be compiled or not going to be compiled as a batch - that will eliminate the `sbt` incremental compilation issues without addressing them in `sbt` itself.

fa2cf6a33ec4a5b2e3370e1b22c2b5f712286a75 is the first step - it introduces `IdExecutionService` and moves all the `IdExecutionInstrument` API up to that interface. The rest of the `runtime` project then depends only on `IdExecutionService`. Such refactoring allows us to move the `IdExecutionInstrument` out of `runtime` project into independent compilation unit.

build.sbt

@@ -260,6 +260,11 @@ lazy val enso = (project in file("."))
     searcher,
     launcher,
     downloader,
+    `runtime-language-epb`,
+    `runtime-instrument-id-execution`,
+    `runtime-instrument-repl-debugger`,
+    `runtime-instrument-runtime-server`,
+    `runtime-with-instruments`,
     `runtime-version-manager`,
     `runtime-version-manager-test`,
     editions,
@@ -1156,6 +1161,30 @@ lazy val frgaalJavaCompilerSetting = Seq(
   Compile / javacOptions ++= Seq("-source", frgaalSourceLevel)
 )
 
+
+lazy val instrumentationSettings = frgaalJavaCompilerSetting ++ Seq(
+  version := ensoVersion,
+  commands += WithDebugCommand.withDebug,
+  Compile/logManager :=
+    sbt.internal.util.CustomLogManager.excludeMsg("Could not determine source for class ", Level.Warn),
+  Compile / javacOptions --= Seq("-source", frgaalSourceLevel),
+  libraryDependencies ++= Seq(
+    "org.graalvm.truffle" % "truffle-api"           % graalVersion      % "provided",
+    "org.graalvm.truffle" % "truffle-dsl-processor" % graalVersion      % "provided",
+  ),
+  (Compile / javacOptions) ++= Seq(
+    "-s",
+    (Compile / sourceManaged).value.getAbsolutePath,
+    "-Xlint:unchecked",
+  ),
+)
+
+lazy val `runtime-language-epb` = (project in file("engine/runtime-language-epb"))
+  .settings(
+    inConfig(Compile)(truffleRunOptionsSettings),
+    instrumentationSettings
+  )
+
 lazy val runtime = (project in file("engine/runtime"))
   .configs(Benchmark)
   .settings(
@@ -1164,7 +1193,6 @@ lazy val runtime = (project in file("engine/runtime"))
       sbt.internal.util.CustomLogManager.excludeMsg("Could not determine source for class ", Level.Warn),
     version := ensoVersion,
     commands += WithDebugCommand.withDebug,
-    cleanInstruments := FixInstrumentsGeneration.cleanInstruments.value,
     inConfig(Compile)(truffleRunOptionsSettings),
     inConfig(Benchmark)(Defaults.testSettings),
     inConfig(Benchmark)(
@@ -1197,14 +1225,9 @@ lazy val runtime = (project in file("engine/runtime"))
       "junit"               % "junit"                 % "4.12"            % Test,
       "com.novocode"        % "junit-interface"       % "0.11"            % Test exclude ("junit", "junit-dep")
     ),
-    // Note [Unmanaged Classpath]
-    Test / unmanagedClasspath += (baseDirectory.value / ".." / ".." / "app" / "gui" / "view" / "graph-editor" / "src" / "builtin" / "visualization" / "native" / "inc"),
     Compile / compile / compileInputs := (Compile / compile / compileInputs)
       .dependsOn(CopyTruffleJAR.preCompileTask)
       .value,
-    Compile / compile := FixInstrumentsGeneration.patchedCompile
-      .dependsOn(FixInstrumentsGeneration.preCompileTask)
-      .value,
     // Note [Classpath Separation]
     Test / javaOptions ++= Seq(
       "-Dgraalvm.locatorDisabled=true",
@@ -1258,20 +1281,7 @@ lazy val runtime = (project in file("engine/runtime"))
     }.evaluated,
     Benchmark / parallelExecution := false
   )
-  .settings(
+  .dependsOn(`runtime-language-epb`)
-    assembly / assemblyJarName := "runtime.jar",
-    assembly / test := {},
-    assembly / assemblyOutputPath := file("runtime.jar"),
-    assembly / assemblyMergeStrategy := {
-      case PathList("META-INF", file, xs @ _*) if file.endsWith(".DSA") =>
-        MergeStrategy.discard
-      case PathList("META-INF", file, xs @ _*) if file.endsWith(".SF") =>
-        MergeStrategy.discard
-      case PathList("META-INF", "MANIFEST.MF", xs @ _*) =>
-        MergeStrategy.discard
-      case _ => MergeStrategy.first
-    }
-  )
   .dependsOn(`edition-updater`)
   .dependsOn(`interpreter-dsl`)
   .dependsOn(`library-manager`)
@@ -1288,6 +1298,66 @@ lazy val runtime = (project in file("engine/runtime"))
   .dependsOn(`docs-generator`)
   .dependsOn(testkit % Test)
 
+lazy val `runtime-instrument-id-execution` = (project in file("engine/runtime-instrument-id-execution"))
+  .settings(
+    inConfig(Compile)(truffleRunOptionsSettings),
+    instrumentationSettings
+  )
+  .dependsOn(runtime)
+
+lazy val `runtime-instrument-repl-debugger` = (project in file("engine/runtime-instrument-repl-debugger"))
+  .settings(
+    inConfig(Compile)(truffleRunOptionsSettings),
+    instrumentationSettings
+  )
+  .dependsOn(runtime)
+
+lazy val `runtime-instrument-runtime-server` = (project in file("engine/runtime-instrument-runtime-server"))
+  .settings(
+    inConfig(Compile)(truffleRunOptionsSettings),
+    instrumentationSettings
+  )
+  .dependsOn(runtime)
+
+lazy val `runtime-with-instruments`  = (project in file("engine/runtime-with-instruments"))
+  .configs(Benchmark)
+  .settings(
+    inConfig(Compile)(truffleRunOptionsSettings),
+    inConfig(Benchmark)(Defaults.testSettings),
+    Benchmark / javacOptions --= Seq("-source", frgaalSourceLevel),
+    Test / javaOptions ++= Seq(
+      "-Dgraalvm.locatorDisabled=true",
+      s"--upgrade-module-path=${file("engine/runtime/build-cache/truffle-api.jar").absolutePath}"
+    ),
+    Test / fork := true,
+    Test / envVars ++= distributionEnvironmentOverrides ++ Map(
+      "ENSO_TEST_DISABLE_IR_CACHE" -> "false"
+    ),
+    libraryDependencies ++= Seq(
+      "org.scalatest"      %% "scalatest"             % scalatestVersion  % Test,
+    ),
+    // Note [Unmanaged Classpath]
+    Test / unmanagedClasspath += (baseDirectory.value / ".." / ".." / "app" / "gui" / "view" / "graph-editor" / "src" / "builtin" / "visualization" / "native" / "inc"),
+    assembly / assemblyJarName := "runtime.jar",
+    assembly / test := {},
+    assembly / assemblyOutputPath := file("runtime.jar"),
+    assembly / assemblyMergeStrategy := {
+      case PathList("META-INF", file, xs @ _*) if file.endsWith(".DSA") =>
+        MergeStrategy.discard
+      case PathList("META-INF", file, xs @ _*) if file.endsWith(".SF") =>
+        MergeStrategy.discard
+      case PathList("META-INF", "MANIFEST.MF", xs @ _*) =>
+        MergeStrategy.discard
+      case PathList("META-INF", "services", xs @ _*) =>
+        MergeStrategy.concat
+      case _ => MergeStrategy.first
+    }
+  )
+  .dependsOn(runtime % "compile->compile;test->test")
+  .dependsOn(`runtime-instrument-id-execution`)
+  .dependsOn(`runtime-instrument-repl-debugger`)
+  .dependsOn(`runtime-instrument-runtime-server`)
+
 /* Note [Unmanaged Classpath]
  * ~~~~~~~~~~~~~~~~~~~~~~~~~~
  * As the definition of the core primitives in `core_definition` is achieved
@@ -1346,7 +1416,7 @@ lazy val `engine-runner` = project
   )
   .settings(
     assembly := assembly
-      .dependsOn(runtime / assembly)
+      .dependsOn(`runtime-with-instruments` / assembly)
       .value
   )
   .dependsOn(`version-output`)

docs/infrastructure/sbt.md

@@ -85,9 +85,7 @@ dependency of `compileInputs` which runs _strictly before_ actual compilation.
 
 To check some invariants _after_ compilation, we can replace the original
 `Compile / compile` task with a custom one which does its post-compile checks
-and returns the result of `(Compile / compile).value`. An example of such a
+and returns the result of `(Compile / compile).value`.
-'patched' compile task is implemented in
-[`FixInstrumentsGeneration`](../../project/FixInstrumentsGeneration.scala).
 
 ## Helper Tasks
 
@@ -122,26 +120,17 @@ information is used by `enso --version`.
 Truffle annotation processor generates a file that registers instruments
 provided by the runtime. Unfortunately, with incremental compilation, only the
 changed instruments are recompiled and the annotation processor does not detect
-this, so un-changed instruments get un-registered.
+this, so un-changed instruments get overwritten.
 
-To fix this, the pre-compile task defined in
+In the past we had a pre-compile task (see
-[`FixInstrumentsGeneration`](../../project/FixInstrumentsGeneration.scala)
+[FixInstrumentsGeneration](https://github.com/enso-org/enso/blob/8ec2a92b770dea35e47fa9287dbdd1363aabc3c0/project/FixInstrumentsGeneration.scala))
-detects changes to instruments and if only one of them should be recompiled, it
+that detected changes to instruments and if only one of them was to be
-forces recompilation of all of them, to ensure consistency.
+recompiled, it forced recompilation of all of them, to ensure consistency. This
-
+workaround helped to avoid later runtime issues but sometimes triggered a
-For unclear reasons, if this task is attached to
+cascade of recompilations, which weren't clear to the end user. Instead, to
-`Compile / compile / compileInputs`, while it runs strictly _before_
+avoid overwriting entries in META-INF files, individual services were moved to
-compilation, the deleted class files are not always all recompiled. So instead,
+separate subprojects and during assembly of uber jar we concatenate meta files
-it is attached directly to `Compile / compile`. This technically could allow for
+with the same service name.
-a data race between this task and the actual compilation that happens in
-`compileIncremental`, but in practice it seems to be a stable solution.
-
-Sometimes it is unable to detect the need for recompilation before it takes
-place. To help that, there is another task that replaces the default `compile`
-task, which executes the default compilation task and after it, verifies the
-consistency of instruments files. As it cannot restart compilation, to preserve
-consistency it ensures the instruments will be recompiled the next time and
-stops the current compilation task, asking the user to restart it.
 
 ### Flatbuffers Generation
 

docs/runtime/instruments.md

@@ -21,8 +21,7 @@ and other kinds of behavior analysis at runtime.
 ## Naming Conventions
 
 Every Instrument must be implemented in Java and have name that ends with
-`Instrument`. This requirement is to ensure that the [fix](#fixing-compilation)
+`Instrument`.
-described below works.
 
 ## Fixing Compilation
 
@@ -32,7 +31,6 @@ Unfortunately, when doing an incremental compilation, only the changed files are
 recompiled and the annotation processor 'forgets' about other instruments that
 haven't been recompiled, leading to runtime errors about missing instruments.
 
-To fix that, we add the
+To fix that, individual services have to be placed in separate subprojects
-[`FixInstrumentsGeneration.scala`](../../project/FixInstrumentsGeneration.scala)
+depending on `runtime` and aggregated under `runtime-with-instruments`. Later
-task which detects changes to any of the instruments and forces recompilation of
+the META-INF registrations are concatenated in the final uber jar.
-all instruments in the project by removing their classfiles.

engine/runtime-instrument-id-execution/src/main/java/org/enso/interpreter/instrument/IdExecutionInstrument.java

@@ -31,11 +31,9 @@ import java.util.function.Consumer;
 
 /** An instrument for getting values from AST-identified expressions. */
 @TruffleInstrument.Registration(
-    id = IdExecutionInstrument.INSTRUMENT_ID,
+    id = IdExecutionService.INSTRUMENT_ID,
-    services = IdExecutionInstrument.class)
+    services = IdExecutionService.class)
-public class IdExecutionInstrument extends TruffleInstrument {
+public class IdExecutionInstrument extends TruffleInstrument implements IdExecutionService {
-  public static final String INSTRUMENT_ID = "id-value-extractor";
-
   private Timer timer;
   private Env env;
 
@@ -56,225 +54,11 @@ public class IdExecutionInstrument extends TruffleInstrument {
    *
    * @param timer the timer to override with
    */
+  @Override
   public void overrideTimer(Timer timer) {
     this.timer = timer;
   }
 
-  /** A class for notifications about functions being called in the course of execution. */
-  public static class ExpressionCall {
-    private final UUID expressionId;
-    private final FunctionCallInstrumentationNode.FunctionCall call;
-
-    /**
-     * Creates an instance of this class.
-     *
-     * @param expressionId the expression id where function call was performed.
-     * @param call the actual function call data.
-     */
-    public ExpressionCall(UUID expressionId, FunctionCallInstrumentationNode.FunctionCall call) {
-      this.expressionId = expressionId;
-      this.call = call;
-    }
-
-    /** @return the id of the node performing the function call. */
-    public UUID getExpressionId() {
-      return expressionId;
-    }
-
-    /** @return the function call metadata. */
-    public FunctionCallInstrumentationNode.FunctionCall getCall() {
-      return call;
-    }
-  }
-
-  /** A class for notifications about identified expressions' values being computed. */
-  public static class ExpressionValue {
-    private final UUID expressionId;
-    private final Object value;
-    private final String type;
-    private final String cachedType;
-    private final FunctionCallInfo callInfo;
-    private final FunctionCallInfo cachedCallInfo;
-    private final ProfilingInfo[] profilingInfo;
-    private final boolean wasCached;
-
-    /**
-     * Creates a new instance of this class.
-     *
-     * @param expressionId the id of the expression being computed.
-     * @param value the value returned by computing the expression.
-     * @param type the type of the returned value.
-     * @param cachedType the cached type of the value.
-     * @param callInfo the function call data.
-     * @param cachedCallInfo the cached call data.
-     * @param profilingInfo the profiling information associated with this node
-     * @param wasCached whether or not the value was obtained from the cache
-     */
-    public ExpressionValue(
-        UUID expressionId,
-        Object value,
-        String type,
-        String cachedType,
-        FunctionCallInfo callInfo,
-        FunctionCallInfo cachedCallInfo,
-        ProfilingInfo[] profilingInfo,
-        boolean wasCached) {
-      this.expressionId = expressionId;
-      this.value = value;
-      this.type = type;
-      this.cachedType = cachedType;
-      this.callInfo = callInfo;
-      this.cachedCallInfo = cachedCallInfo;
-      this.profilingInfo = profilingInfo;
-      this.wasCached = wasCached;
-    }
-
-    @Override
-    public String toString() {
-      String profilingInfo = Arrays.toString(this.profilingInfo);
-      return "ExpressionValue{"
-          + "expressionId="
-          + expressionId
-          + ", value="
-          + new MaskedString(value.toString()).applyMasking()
-          + ", type='"
-          + type
-          + '\''
-          + ", cachedType='"
-          + cachedType
-          + '\''
-          + ", callInfo="
-          + callInfo
-          + ", cachedCallInfo="
-          + cachedCallInfo
-          + ", profilingInfo="
-          + profilingInfo
-          + ", wasCached="
-          + wasCached
-          + '}';
-    }
-
-    /** @return the id of the expression computed. */
-    public UUID getExpressionId() {
-      return expressionId;
-    }
-
-    /** @return the type of the returned value. */
-    public String getType() {
-      return type;
-    }
-
-    /** @return the cached type of the value. */
-    public String getCachedType() {
-      return cachedType;
-    }
-
-    /** @return the computed value of the expression. */
-    public Object getValue() {
-      return value;
-    }
-
-    /** @return the function call data. */
-    public FunctionCallInfo getCallInfo() {
-      return callInfo;
-    }
-
-    /** @return the function call data previously associated with the expression. */
-    public FunctionCallInfo getCachedCallInfo() {
-      return cachedCallInfo;
-    }
-
-    /** @return the profiling information associated with this expression */
-    public ProfilingInfo[] getProfilingInfo() {
-      return profilingInfo;
-    }
-
-    /** @return whether or not the expression result was obtained from the cache */
-    public boolean wasCached() {
-      return wasCached;
-    }
-
-    /** @return {@code true} when the type differs from the cached value. */
-    public boolean isTypeChanged() {
-      return !Objects.equals(type, cachedType);
-    }
-
-    /** @return {@code true} when the function call differs from the cached value. */
-    public boolean isFunctionCallChanged() {
-      return !Objects.equals(callInfo, cachedCallInfo);
-    }
-  }
-
-  /** Information about the function call. */
-  public static class FunctionCallInfo {
-
-    private final QualifiedName moduleName;
-    private final QualifiedName typeName;
-    private final String functionName;
-
-    /**
-     * Creates a new instance of this class.
-     *
-     * @param call the function call.
-     */
-    public FunctionCallInfo(FunctionCallInstrumentationNode.FunctionCall call) {
-      RootNode rootNode = call.getFunction().getCallTarget().getRootNode();
-      if (rootNode instanceof MethodRootNode) {
-        MethodRootNode methodNode = (MethodRootNode) rootNode;
-        moduleName = methodNode.getModuleScope().getModule().getName();
-        typeName = methodNode.getAtomConstructor().getQualifiedName();
-        functionName = methodNode.getMethodName();
-      } else if (rootNode instanceof EnsoRootNode) {
-        moduleName = ((EnsoRootNode) rootNode).getModuleScope().getModule().getName();
-        typeName = null;
-        functionName = rootNode.getName();
-      } else {
-        moduleName = null;
-        typeName = null;
-        functionName = rootNode.getName();
-      }
-    }
-
-    @Override
-    public boolean equals(Object o) {
-      if (this == o) {
-        return true;
-      }
-      if (o == null || getClass() != o.getClass()) {
-        return false;
-      }
-      FunctionCallInfo that = (FunctionCallInfo) o;
-      return Objects.equals(moduleName, that.moduleName)
-          && Objects.equals(typeName, that.typeName)
-          && Objects.equals(functionName, that.functionName);
-    }
-
-    @Override
-    public int hashCode() {
-      return Objects.hash(moduleName, typeName, functionName);
-    }
-
-    @Override
-    public String toString() {
-      return moduleName + "::" + typeName + "::" + functionName;
-    }
-
-    /** @return the name of the module this function was defined in, or null if not available. */
-    public QualifiedName getModuleName() {
-      return moduleName;
-    }
-
-    /** @return the name of the type this method was defined for, or null if not a method. */
-    public QualifiedName getTypeName() {
-      return typeName;
-    }
-
-    /** @return the name of this function. */
-    public String getFunctionName() {
-      return functionName;
-    }
-  }
-
   /** The listener class used by this instrument. */
   private static class IdExecutionEventListener implements ExecutionEventListener {
     private final CallTarget entryCallTarget;
@@ -506,6 +290,7 @@ public class IdExecutionInstrument extends TruffleInstrument {
    * @param onExceptionalCallback the consumer of the exceptional events.
    * @return a reference to the attached event listener.
    */
+  @Override
   public EventBinding<ExecutionEventListener> bind(
       CallTarget entryCallTarget,
       LocationFilter locationFilter,

engine/runtime-instrument-repl-debugger/src/main/java/org/enso/interpreter/instrument/ReplDebuggerInstrument.java

@@ -20,7 +20,6 @@ import org.enso.interpreter.node.expression.builtin.text.util.ToJavaStringNode;
 import org.enso.interpreter.node.expression.debug.CaptureResultScopeNode;
 import org.enso.interpreter.node.expression.debug.EvalNode;
 import org.enso.interpreter.runtime.Context;
-import org.enso.interpreter.runtime.builtin.Builtins;
 import org.enso.interpreter.runtime.callable.CallerInfo;
 import org.enso.interpreter.runtime.callable.function.Function;
 import org.enso.interpreter.runtime.data.text.Text;
@@ -61,8 +60,8 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
         instrumenter.attachExecutionEventFactory(
             filter,
             ctx ->
-                new ReplExecutionEventNode(
+                new ReplExecutionEventNodeImpl(
-                    ctx, handler, env.getLogger(ReplExecutionEventNode.class)));
+                    ctx, handler, env.getLogger(ReplExecutionEventNodeImpl.class)));
       } else {
         env.getLogger(ReplDebuggerInstrument.class)
             .warning("ReplDebuggerInstrument was initialized, " + "but no client connected");
@@ -85,7 +84,8 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
   }
 
   /** The actual node that's installed as a probe on any node the instrument was launched for. */
-  public static class ReplExecutionEventNode extends ExecutionEventNode {
+  private static class ReplExecutionEventNodeImpl extends ExecutionEventNode
+      implements ReplExecutionEventNode {
     private @Child EvalNode evalNode = EvalNode.buildWithResultScopeCapture();
     private @Child ToJavaStringNode toJavaStringNode = ToJavaStringNode.build();
 
@@ -95,7 +95,7 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
     private DebuggerMessageHandler handler;
     private TruffleLogger logger;
 
-    private ReplExecutionEventNode(
+    private ReplExecutionEventNodeImpl(
         EventContext eventContext, DebuggerMessageHandler handler, TruffleLogger logger) {
       this.eventContext = eventContext;
       this.handler = handler;
@@ -114,11 +114,7 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
       return currentFrame;
     }
 
-    /**
+    @Override
-     * Lists all the bindings available in the current execution scope.
-     *
-     * @return a map, where keys are variable names and values are current values of variables.
-     */
     public Map<String, Object> listBindings() {
       Map<String, FramePointer> flatScope =
           nodeState.getLastScope().getLocalScope().flattenBindings();
@@ -129,12 +125,7 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
       return result;
     }
 
-    /**
+    @Override
-     * Evaluates an arbitrary expression in the current execution context.
-     *
-     * @param expression the expression to evaluate
-     * @return the result of evaluating the expression or an exception that caused failure
-     */
     public Either<Exception, Object> evaluate(String expression) {
       ReplExecutionEventNodeState savedState = nodeState;
       try {
@@ -155,14 +146,11 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
       }
     }
 
-    /**
+    @Override
-     * Returns the String representation of the provided object as defined by Enso {@code to_text}
+    public Either<Exception, String> showObject(Object object) {
-     * operation.
-     */
-    public Either<Exception, String> showObject(Object o) {
       try {
         InteropLibrary interop = InteropLibrary.getUncached();
-        return new Right<>(interop.asString(interop.toDisplayString(o)));
+        return new Right<>(interop.asString(interop.toDisplayString(object)));
       } catch (Exception e) {
         return new Left<>(e);
       }
@@ -176,15 +164,7 @@ public class ReplDebuggerInstrument extends TruffleInstrument {
       }
     }
 
-    /**
+    @Override
-     * Terminates this REPL session.
-     *
-     * <p>The last result of {@link #evaluate(String)} (or {@link Builtins#nothing()} if {@link
-     * #evaluate(String)} was not called before) will be returned from the instrumented node.
-     *
-     * <p>This function must always be called at the end of REPL session, as otherwise the program
-     * will never resume. It's forbidden to use this object after exit has been called.
-     */
     public void exit() {
       throw eventContext.createUnwind(nodeState.getLastReturn());
     }

engine/runtime-language-epb/src/main/java/org/enso/interpreter/epb/EpbContext.java

@@ -3,7 +3,6 @@ package org.enso.interpreter.epb;
 import com.oracle.truffle.api.CompilerDirectives;
 import com.oracle.truffle.api.TruffleLanguage;
 import com.oracle.truffle.api.nodes.Node;
-import org.enso.interpreter.Language;
 import org.enso.interpreter.epb.runtime.GuardedTruffleContext;
 
 /**

engine/runtime-language-epb/src/main/java/org/enso/interpreter/epb/node/JsForeignNode.java

@@ -4,7 +4,6 @@ import com.oracle.truffle.api.dsl.NodeField;
 import com.oracle.truffle.api.dsl.Specialization;
 import com.oracle.truffle.api.interop.*;
 import com.oracle.truffle.api.library.CachedLibrary;
-import org.enso.interpreter.runtime.data.Array;
 
 /** A node responsible for performing foreign JS calls. */
 @NodeField(name = "foreignFunction", type = Object.class)
@@ -34,7 +33,7 @@ public abstract class JsForeignNode extends ForeignFunctionCallNode {
     if (getArity() - 1 >= 0) System.arraycopy(arguments, 1, positionalArgs, 0, getArity() - 1);
     try {
       return interopLibrary.invokeMember(
-          getForeignFunction(), "apply", arguments[0], new Array(positionalArgs));
+          getForeignFunction(), "apply", arguments[0], new ReadOnlyArray(positionalArgs));
     } catch (UnsupportedMessageException
         | UnknownIdentifierException
         | ArityException

engine/runtime-language-epb/src/main/java/org/enso/interpreter/epb/node/ReadOnlyArray.java

@@ -0,0 +1,96 @@
+package org.enso.interpreter.epb.node;
+
+import com.oracle.truffle.api.interop.InteropLibrary;
+import com.oracle.truffle.api.interop.InvalidArrayIndexException;
+import com.oracle.truffle.api.interop.TruffleObject;
+import com.oracle.truffle.api.library.ExportLibrary;
+import com.oracle.truffle.api.library.ExportMessage;
+
+import java.util.Arrays;
+
+/**
+ * A primitive boxed array type to be used only in EPB.
+ *
+ * <p>{@link ReadOnlyArray} is essentially a stripped-down, read-only, version of {@link
+ * org.enso.interpreter.runtime.data.Array}, used for passing arguments. The latter cannot be used
+ * in EPB because EPB is a dependency of runtime.
+ */
+@ExportLibrary(InteropLibrary.class)
+public class ReadOnlyArray implements TruffleObject {
+
+  private final Object[] items;
+
+  /**
+   * Creates a new array
+   *
+   * @param items the element values
+   */
+  public ReadOnlyArray(Object... items) {
+    this.items = items;
+  }
+  /**
+   * Marks the object as array-like for Polyglot APIs.
+   *
+   * @return {@code true}
+   */
+  @ExportMessage
+  public boolean hasArrayElements() {
+    return true;
+  }
+
+  /**
+   * Handles reading an element by index through the polyglot API.
+   *
+   * @param index the index to read
+   * @return the element value at the provided index
+   * @throws InvalidArrayIndexException when the index is out of bounds.
+   */
+  @ExportMessage
+  public Object readArrayElement(long index) throws InvalidArrayIndexException {
+    if (index >= items.length || index < 0) {
+      throw InvalidArrayIndexException.create(index);
+    }
+    return items[(int) index];
+  }
+
+  /**
+   * Exposes the size of this collection through the polyglot API.
+   *
+   * @return the size of this array
+   */
+  @ExportMessage
+  long getArraySize() {
+    return items.length;
+  }
+
+  /**
+   * Exposes an index validity check through the polyglot API.
+   *
+   * @param index the index to check
+   * @return {@code true} if the index is valid, {@code false} otherwise.
+   */
+  @ExportMessage
+  boolean isArrayElementReadable(long index) {
+    return index < getArraySize() && index >= 0;
+  }
+
+  @ExportMessage
+  void writeArrayElement(long index, Object value) {
+    throw new UnsupportedOperationException("writing unsupoorted in PrimArray");
+  }
+
+  @ExportMessage
+  boolean isArrayElementModifiable(long index) {
+    return false;
+  }
+
+  @ExportMessage
+  boolean isArrayElementInsertable(long index) {
+    return false;
+  }
+
+  @Override
+  public String toString() {
+    return Arrays.toString(items);
+  }
+}

engine/runtime-with-instruments/src/test/scala/org/enso/interpreter/test/instrument/RuntimeErrorsTest.scala

@@ -81,8 +81,9 @@ class RuntimeErrorsTest
       .getBindings(LanguageInfo.ID)
       .invokeMember(MethodNames.TopScope.LEAK_CONTEXT)
       .asHostObject[org.enso.interpreter.runtime.Context]
-    languageContext.getLanguage.getIdExecutionInstrument
+    languageContext.getLanguage.getIdExecutionService.ifPresent(
-      .overrideTimer(new TestTimer)
+      _.overrideTimer(new TestTimer)
+    );
 
     def writeMain(contents: String): File =
       Files.write(pkg.mainFile.toPath, contents.getBytes).toFile

engine/runtime-with-instruments/src/test/scala/org/enso/interpreter/test/instrument/RuntimeInstrumentTest.scala

@@ -74,8 +74,9 @@ class RuntimeInstrumentTest
       .getBindings(LanguageInfo.ID)
       .invokeMember(MethodNames.TopScope.LEAK_CONTEXT)
       .asHostObject[org.enso.interpreter.runtime.Context]
-    languageContext.getLanguage.getIdExecutionInstrument
+    languageContext.getLanguage.getIdExecutionService.ifPresent(
-      .overrideTimer(new TestTimer)
+      _.overrideTimer(new TestTimer)
+    );
 
     def writeMain(contents: String): File =
       Files.write(pkg.mainFile.toPath, contents.getBytes).toFile

engine/runtime-with-instruments/src/test/scala/org/enso/interpreter/test/instrument/RuntimeServerTest.scala

@@ -82,8 +82,9 @@ class RuntimeServerTest
       .asHostObject[EnsoContext]
     val info =
       languageContext.getEnvironment.getPublicLanguages.get(LanguageInfo.ID)
-    languageContext.getLanguage.getIdExecutionInstrument
+    languageContext.getLanguage.getIdExecutionService.ifPresent(
-      .overrideTimer(new TestTimer)
+      _.overrideTimer(new TestTimer)
+    );
 
     def writeMain(contents: String): File =
       Files.write(pkg.mainFile.toPath, contents.getBytes).toFile

engine/runtime-with-instruments/src/test/scala/org/enso/interpreter/test/instrument/RuntimeVisualizationsTest.scala

@@ -81,8 +81,9 @@ class RuntimeVisualisationsTest
       .getBindings(LanguageInfo.ID)
       .invokeMember(MethodNames.TopScope.LEAK_CONTEXT)
       .asHostObject[EnsoContext]
-    languageContext.getLanguage.getIdExecutionInstrument
+    languageContext.getLanguage.getIdExecutionService.ifPresent(
-      .overrideTimer(new TestTimer)
+      _.overrideTimer(new TestTimer)
+    );
 
     def writeMain(contents: String): File =
       Files.write(pkg.mainFile.toPath, contents.getBytes).toFile

engine/runtime/src/main/java/org/enso/interpreter/Language.java

@@ -15,7 +15,7 @@ import org.enso.distribution.Environment;
 import org.enso.distribution.locking.LockManager;
 import org.enso.distribution.locking.ThreadSafeFileLockManager;
 import org.enso.interpreter.epb.EpbLanguage;
-import org.enso.interpreter.instrument.IdExecutionInstrument;
+import org.enso.interpreter.instrument.IdExecutionService;
 import org.enso.interpreter.instrument.NotificationHandler.Forwarder;
 import org.enso.interpreter.instrument.NotificationHandler.TextMode$;
 import org.enso.interpreter.node.ProgramRootNode;
@@ -29,6 +29,8 @@ import org.enso.polyglot.LanguageInfo;
 import org.enso.polyglot.RuntimeOptions;
 import org.graalvm.options.OptionDescriptors;
 
+import java.util.Optional;
+
 /**
  * The root of the Enso implementation.
  *
@@ -59,7 +61,7 @@ import org.graalvm.options.OptionDescriptors;
   IdentifiedTag.class
 })
 public final class Language extends TruffleLanguage<Context> {
-  private IdExecutionInstrument idExecutionInstrument;
+  private Optional<IdExecutionService> idExecutionInstrument = Optional.empty();
   private static final LanguageReference<Language> REFERENCE =
       LanguageReference.create(Language.class);
 
@@ -108,12 +110,15 @@ public final class Language extends TruffleLanguage<Context> {
     Context context =
         new Context(
             this, getLanguageHome(), env, notificationHandler, lockManager, distributionManager);
-    InstrumentInfo idValueListenerInstrument =
+    idExecutionInstrument =
-        env.getInstruments().get(IdExecutionInstrument.INSTRUMENT_ID);
+        Optional.ofNullable(env.getInstruments().get(IdExecutionService.INSTRUMENT_ID))
-    idExecutionInstrument = env.lookup(idValueListenerInstrument, IdExecutionInstrument.class);
+            .map(
+                idValueListenerInstrument ->
+                    env.lookup(idValueListenerInstrument, IdExecutionService.class));
     env.registerService(
         new ExecutionService(
             context, idExecutionInstrument, notificationHandler, connectedLockManager));
+
     return context;
   }
 
@@ -179,7 +184,7 @@ public final class Language extends TruffleLanguage<Context> {
   }
 
   /** @return a reference to the execution instrument */
-  public IdExecutionInstrument getIdExecutionInstrument() {
+  public Optional<IdExecutionService> getIdExecutionService() {
     return idExecutionInstrument;
   }
 }

engine/runtime/src/main/java/org/enso/interpreter/instrument/IdExecutionService.java

@@ -0,0 +1,271 @@
+package org.enso.interpreter.instrument;
+
+import com.oracle.truffle.api.CallTarget;
+import com.oracle.truffle.api.instrumentation.EventBinding;
+import com.oracle.truffle.api.instrumentation.ExecutionEventListener;
+import com.oracle.truffle.api.nodes.RootNode;
+import java.util.Arrays;
+import java.util.Objects;
+import java.util.UUID;
+import java.util.function.Consumer;
+import org.enso.interpreter.instrument.execution.LocationFilter;
+import org.enso.interpreter.instrument.execution.Timer;
+import org.enso.interpreter.instrument.profiling.ProfilingInfo;
+import org.enso.interpreter.node.EnsoRootNode;
+import org.enso.interpreter.node.MethodRootNode;
+import org.enso.interpreter.node.callable.FunctionCallInstrumentationNode;
+import org.enso.logger.masking.MaskedString;
+import org.enso.pkg.QualifiedName;
+
+public interface IdExecutionService {
+  public static final String INSTRUMENT_ID = "id-value-extractor";
+
+  /**
+   * Attach a new listener to observe identified nodes within given function.
+   *
+   * @param entryCallTarget the call target being observed.
+   * @param locationFilter the location filter.
+   * @param cache the precomputed expression values.
+   * @param methodCallsCache the storage tracking the executed method calls.
+   * @param syncState the synchronization state of runtime updates.
+   * @param nextExecutionItem the next item scheduled for execution.
+   * @param functionCallCallback the consumer of function call events.
+   * @param onComputedCallback the consumer of the computed value events.
+   * @param onCachedCallback the consumer of the cached value events.
+   * @param onExceptionalCallback the consumer of the exceptional events.
+   * @return a reference to the attached event listener.
+   */
+  public EventBinding<ExecutionEventListener> bind(
+      CallTarget entryCallTarget,
+      LocationFilter locationFilter,
+      RuntimeCache cache,
+      MethodCallsCache methodCallsCache,
+      UpdatesSynchronizationState syncState,
+      UUID nextExecutionItem,
+      Consumer<ExpressionCall> functionCallCallback,
+      Consumer<ExpressionValue> onComputedCallback,
+      Consumer<ExpressionValue> onCachedCallback,
+      Consumer<Exception> onExceptionalCallback);
+
+  /**
+   * Override the default nanosecond timer with the specified {@code timer}.
+   *
+   * @param timer the timer to override with
+   */
+  void overrideTimer(Timer timer);
+
+  /** A class for notifications about functions being called in the course of execution. */
+  public static class ExpressionCall {
+    private final UUID expressionId;
+    private final FunctionCallInstrumentationNode.FunctionCall call;
+
+    /**
+     * Creates an instance of this class.
+     *
+     * @param expressionId the expression id where function call was performed.
+     * @param call the actual function call data.
+     */
+    public ExpressionCall(UUID expressionId, FunctionCallInstrumentationNode.FunctionCall call) {
+      this.expressionId = expressionId;
+      this.call = call;
+    }
+
+    /** @return the id of the node performing the function call. */
+    public UUID getExpressionId() {
+      return expressionId;
+    }
+
+    /** @return the function call metadata. */
+    public FunctionCallInstrumentationNode.FunctionCall getCall() {
+      return call;
+    }
+  }
+
+  /** A class for notifications about identified expressions' values being computed. */
+  public static class ExpressionValue {
+    private final UUID expressionId;
+    private final Object value;
+    private final String type;
+    private final String cachedType;
+    private final FunctionCallInfo callInfo;
+    private final FunctionCallInfo cachedCallInfo;
+    private final ProfilingInfo[] profilingInfo;
+    private final boolean wasCached;
+
+    /**
+     * Creates a new instance of this class.
+     *
+     * @param expressionId the id of the expression being computed.
+     * @param value the value returned by computing the expression.
+     * @param type the type of the returned value.
+     * @param cachedType the cached type of the value.
+     * @param callInfo the function call data.
+     * @param cachedCallInfo the cached call data.
+     * @param profilingInfo the profiling information associated with this node
+     * @param wasCached whether or not the value was obtained from the cache
+     */
+    public ExpressionValue(
+        UUID expressionId,
+        Object value,
+        String type,
+        String cachedType,
+        FunctionCallInfo callInfo,
+        FunctionCallInfo cachedCallInfo,
+        ProfilingInfo[] profilingInfo,
+        boolean wasCached) {
+      this.expressionId = expressionId;
+      this.value = value;
+      this.type = type;
+      this.cachedType = cachedType;
+      this.callInfo = callInfo;
+      this.cachedCallInfo = cachedCallInfo;
+      this.profilingInfo = profilingInfo;
+      this.wasCached = wasCached;
+    }
+
+    @Override
+    public String toString() {
+      String profilingInfo = Arrays.toString(this.profilingInfo);
+      return "ExpressionValue{"
+          + "expressionId="
+          + expressionId
+          + ", value="
+          + new MaskedString(value.toString()).applyMasking()
+          + ", type='"
+          + type
+          + '\''
+          + ", cachedType='"
+          + cachedType
+          + '\''
+          + ", callInfo="
+          + callInfo
+          + ", cachedCallInfo="
+          + cachedCallInfo
+          + ", profilingInfo="
+          + profilingInfo
+          + ", wasCached="
+          + wasCached
+          + '}';
+    }
+
+    /** @return the id of the expression computed. */
+    public UUID getExpressionId() {
+      return expressionId;
+    }
+
+    /** @return the type of the returned value. */
+    public String getType() {
+      return type;
+    }
+
+    /** @return the cached type of the value. */
+    public String getCachedType() {
+      return cachedType;
+    }
+
+    /** @return the computed value of the expression. */
+    public Object getValue() {
+      return value;
+    }
+
+    /** @return the function call data. */
+    public FunctionCallInfo getCallInfo() {
+      return callInfo;
+    }
+
+    /** @return the function call data previously associated with the expression. */
+    public FunctionCallInfo getCachedCallInfo() {
+      return cachedCallInfo;
+    }
+
+    /** @return the profiling information associated with this expression */
+    public ProfilingInfo[] getProfilingInfo() {
+      return profilingInfo;
+    }
+
+    /** @return whether or not the expression result was obtained from the cache */
+    public boolean wasCached() {
+      return wasCached;
+    }
+
+    /** @return {@code true} when the type differs from the cached value. */
+    public boolean isTypeChanged() {
+      return !Objects.equals(type, cachedType);
+    }
+
+    /** @return {@code true} when the function call differs from the cached value. */
+    public boolean isFunctionCallChanged() {
+      return !Objects.equals(callInfo, cachedCallInfo);
+    }
+  }
+
+  /** Information about the function call. */
+  public static class FunctionCallInfo {
+
+    private final QualifiedName moduleName;
+    private final QualifiedName typeName;
+    private final String functionName;
+
+    /**
+     * Creates a new instance of this class.
+     *
+     * @param call the function call.
+     */
+    public FunctionCallInfo(FunctionCallInstrumentationNode.FunctionCall call) {
+      RootNode rootNode = call.getFunction().getCallTarget().getRootNode();
+      if (rootNode instanceof MethodRootNode) {
+        MethodRootNode methodNode = (MethodRootNode) rootNode;
+        moduleName = methodNode.getModuleScope().getModule().getName();
+        typeName = methodNode.getAtomConstructor().getQualifiedName();
+        functionName = methodNode.getMethodName();
+      } else if (rootNode instanceof EnsoRootNode) {
+        moduleName = ((EnsoRootNode) rootNode).getModuleScope().getModule().getName();
+        typeName = null;
+        functionName = rootNode.getName();
+      } else {
+        moduleName = null;
+        typeName = null;
+        functionName = rootNode.getName();
+      }
+    }
+
+    @Override
+    public boolean equals(Object o) {
+      if (this == o) {
+        return true;
+      }
+      if (o == null || getClass() != o.getClass()) {
+        return false;
+      }
+      FunctionCallInfo that = (FunctionCallInfo) o;
+      return Objects.equals(moduleName, that.moduleName)
+          && Objects.equals(typeName, that.typeName)
+          && Objects.equals(functionName, that.functionName);
+    }
+
+    @Override
+    public int hashCode() {
+      return Objects.hash(moduleName, typeName, functionName);
+    }
+
+    @Override
+    public String toString() {
+      return moduleName + "::" + typeName + "::" + functionName;
+    }
+
+    /** @return the name of the module this function was defined in, or null if not available. */
+    public QualifiedName getModuleName() {
+      return moduleName;
+    }
+
+    /** @return the name of the type this method was defined for, or null if not a method. */
+    public QualifiedName getTypeName() {
+      return typeName;
+    }
+
+    /** @return the name of this function. */
+    public String getFunctionName() {
+      return functionName;
+    }
+  }
+}

engine/runtime/src/main/java/org/enso/interpreter/instrument/ReplExecutionEventNode.java

@@ -0,0 +1,44 @@
+package org.enso.interpreter.instrument;
+
+import scala.util.Either;
+
+import java.util.Map;
+
+public interface ReplExecutionEventNode {
+
+  /**
+   * Lists all the bindings available in the current execution scope.
+   *
+   * @return a map, where keys are variable names and values are current values of variables.
+   */
+  Map<String, Object> listBindings();
+
+  /**
+   * Evaluates an arbitrary expression in the current execution context.
+   *
+   * @param expression the expression to evaluate
+   * @return the result of evaluating the expression or an exception that caused failure
+   */
+  Either<Exception, Object> evaluate(String expression);
+
+  /**
+   * Returns the String representation of the provided object as defined by Enso {@code to_text}
+   * operation.
+   *
+   * @param object the object to show
+   * @return String representation of the provided object or a failure if it cannot be inferred
+   */
+  Either<Exception, String> showObject(Object object);
+
+  /**
+   * Terminates this REPL session.
+   *
+   * <p>The last result of {@link #evaluate(String)} (or {@link
+   * org.enso.interpreter.runtime.builtin.Builtins#nothing()} if {@link #evaluate(String)} was not
+   * called before) will be returned from the instrumented node.
+   *
+   * <p>This function must always be called at the end of REPL session, as otherwise the program
+   * will never resume. It's forbidden to use this object after exit has been called.
+   */
+  void exit();
+}

engine/runtime/src/main/java/org/enso/interpreter/instrument/RuntimeCache.java

@@ -11,7 +11,7 @@ public final class RuntimeCache {
 
   private final Map<UUID, SoftReference<Object>> cache = new HashMap<>();
   private final Map<UUID, String> types = new HashMap<>();
-  private final Map<UUID, IdExecutionInstrument.FunctionCallInfo> calls = new HashMap<>();
+  private final Map<UUID, IdExecutionService.FunctionCallInfo> calls = new HashMap<>();
   private Map<UUID, Double> weights = new HashMap<>();
 
   /**
@@ -73,8 +73,8 @@ public final class RuntimeCache {
    * @param call the function call.
    * @return the function call that was previously associated with this expression.
    */
-  public IdExecutionInstrument.FunctionCallInfo putCall(
+  public IdExecutionService.FunctionCallInfo putCall(
-      UUID key, IdExecutionInstrument.FunctionCallInfo call) {
+      UUID key, IdExecutionService.FunctionCallInfo call) {
     if (call == null) {
       return calls.remove(key);
     }
@@ -82,7 +82,7 @@ public final class RuntimeCache {
   }
 
   /** @return the cached function call associated with the expression. */
-  public IdExecutionInstrument.FunctionCallInfo getCall(UUID key) {
+  public IdExecutionService.FunctionCallInfo getCall(UUID key) {
     return calls.get(key);
   }
 

engine/runtime/src/main/java/org/enso/interpreter/runtime/data/Array.java

@@ -20,7 +20,7 @@ import org.enso.interpreter.runtime.library.dispatch.MethodDispatchLibrary;
 
 import java.util.Arrays;
 
-/** A primitve boxed array type for use in the runtime. */
+/** A primitive boxed array type for use in the runtime. */
 @ExportLibrary(InteropLibrary.class)
 @ExportLibrary(MethodDispatchLibrary.class)
 @Builtin(pkg = "mutable", stdlibName = "Standard.Base.Data.Array.Array")

engine/runtime/src/main/java/org/enso/interpreter/service/ExecutionService.java

@@ -18,7 +18,7 @@ import java.util.UUID;
 import java.util.function.Consumer;
 import org.enso.compiler.context.ChangesetBuilder;
 import org.enso.interpreter.instrument.Endpoint;
-import org.enso.interpreter.instrument.IdExecutionInstrument;
+import org.enso.interpreter.instrument.IdExecutionService;
 import org.enso.interpreter.instrument.MethodCallsCache;
 import org.enso.interpreter.instrument.NotificationHandler;
 import org.enso.interpreter.instrument.RuntimeCache;
@@ -54,7 +54,7 @@ import org.enso.text.editing.model;
  */
 public class ExecutionService {
   private final Context context;
-  private final IdExecutionInstrument idExecutionInstrument;
+  private final Optional<IdExecutionService> idExecutionInstrument;
   private final NotificationHandler.Forwarder notificationForwarder;
   private final InteropLibrary interopLibrary = InteropLibrary.getFactory().getUncached();
   private final TruffleLogger logger = TruffleLogger.getLogger(LanguageInfo.ID);
@@ -64,15 +64,15 @@ public class ExecutionService {
    * Creates a new instance of this service.
    *
    * @param context the language context to use.
-   * @param idExecutionInstrument an instance of the {@link IdExecutionInstrument} to use in the
+   * @param idExecutionInstrument optional instance of the {@link IdExecutionService} to use in the
-   *     course of executions.
+   *     course of executions
    * @param notificationForwarder a forwarder of notifications, used to communicate with the user
    * @param connectedLockManager a connected lock manager (if it is in use) that should be connected
    *     to the language server, or null
    */
   public ExecutionService(
       Context context,
-      IdExecutionInstrument idExecutionInstrument,
+      Optional<IdExecutionService> idExecutionInstrument,
       NotificationHandler.Forwarder notificationForwarder,
       ConnectedLockManager connectedLockManager) {
     this.idExecutionInstrument = idExecutionInstrument;
@@ -142,9 +142,9 @@ public class ExecutionService {
       MethodCallsCache methodCallsCache,
       UpdatesSynchronizationState syncState,
       UUID nextExecutionItem,
-      Consumer<IdExecutionInstrument.ExpressionCall> funCallCallback,
+      Consumer<IdExecutionService.ExpressionCall> funCallCallback,
-      Consumer<IdExecutionInstrument.ExpressionValue> onComputedCallback,
+      Consumer<IdExecutionService.ExpressionValue> onComputedCallback,
-      Consumer<IdExecutionInstrument.ExpressionValue> onCachedCallback,
+      Consumer<IdExecutionService.ExpressionValue> onCachedCallback,
       Consumer<Exception> onExceptionalCallback)
       throws ArityException, SourceNotFoundException, UnsupportedMessageException,
           UnsupportedTypeException {
@@ -154,24 +154,26 @@ public class ExecutionService {
     }
     LocationFilter locationFilter = LocationFilter.create(module.getIr(), src);
 
-    EventBinding<ExecutionEventListener> listener =
+    Optional<EventBinding<ExecutionEventListener>> listener =
-        idExecutionInstrument.bind(
+        idExecutionInstrument.map(
-            call.getFunction().getCallTarget(),
+            service ->
-            locationFilter,
+                service.bind(
-            cache,
+                    call.getFunction().getCallTarget(),
-            methodCallsCache,
+                    locationFilter,
-            syncState,
+                    cache,
-            nextExecutionItem,
+                    methodCallsCache,
-            funCallCallback,
+                    syncState,
-            onComputedCallback,
+                    nextExecutionItem,
-            onCachedCallback,
+                    funCallCallback,
-            onExceptionalCallback);
+                    onComputedCallback,
+                    onCachedCallback,
+                    onExceptionalCallback));
     Object p = context.getThreadManager().enter();
     try {
       interopLibrary.execute(call);
     } finally {
       context.getThreadManager().leave(p);
-      listener.dispose();
+      listener.ifPresent(binding -> binding.dispose());
     }
   }
 
@@ -199,9 +201,9 @@ public class ExecutionService {
       MethodCallsCache methodCallsCache,
       UpdatesSynchronizationState syncState,
       UUID nextExecutionItem,
-      Consumer<IdExecutionInstrument.ExpressionCall> funCallCallback,
+      Consumer<IdExecutionService.ExpressionCall> funCallCallback,
-      Consumer<IdExecutionInstrument.ExpressionValue> onComputedCallback,
+      Consumer<IdExecutionService.ExpressionValue> onComputedCallback,
-      Consumer<IdExecutionInstrument.ExpressionValue> onCachedCallback,
+      Consumer<IdExecutionService.ExpressionValue> onCachedCallback,
       Consumer<Exception> onExceptionalCallback)
       throws ArityException, ConstructorNotFoundException, MethodNotFoundException,
           ModuleNotFoundException, UnsupportedMessageException, UnsupportedTypeException {

engine/runtime/src/main/scala/org/enso/interpreter/instrument/DebuggerMessageHandler.scala

@@ -3,7 +3,6 @@ package org.enso.interpreter.instrument
 import java.nio.ByteBuffer
 import com.oracle.truffle.api.TruffleStackTrace
 import com.typesafe.scalalogging.Logger
-import org.enso.interpreter.instrument.ReplDebuggerInstrument.ReplExecutionEventNode
 import org.enso.polyglot.debugger._
 import org.graalvm.polyglot.io.MessageEndpoint
 

engine/runtime/src/main/scala/org/enso/interpreter/instrument/job/ProgramExecutionSupport.scala

@@ -7,7 +7,7 @@ import java.util.UUID
 
 import cats.implicits._
 import com.oracle.truffle.api.exception.AbstractTruffleException
-import org.enso.interpreter.instrument.IdExecutionInstrument.{
+import org.enso.interpreter.instrument.IdExecutionService.{
   ExpressionCall,
   ExpressionValue
 }

project/FixInstrumentsGeneration.scala

@@ -1,140 +0,0 @@
-import sbt.Keys._
-import sbt._
-
-object FixInstrumentsGeneration {
-
-  /** This task detects any changes in source files of Instruments and forces
-    * recompilation of all instruments on any change. This is to ensure that the
-    * Annotation Processor registers all of the instruments.
-    *
-    * Without that fix, incremental compilation would not register unchanged
-    * instruments, leading to runtime errors.
-    *
-    * It should be added as a dependency of Compile / compile / compileInputs.
-    */
-  lazy val preCompileTask = Def.task {
-    val log                 = streams.value.log
-    val root                = baseDirectory.value
-    val classFilesDirectory = (Compile / classDirectory).value
-    val FragileFiles(fragileSources, fragileClassFiles) =
-      getFragileFiles(root, classFilesDirectory)
-
-    val fragileSourcesStore =
-      streams.value.cacheStoreFactory.make("instruments_fixer")
-
-    Tracked.diffInputs(fragileSourcesStore, FileInfo.hash)(
-      fragileSources.toSet
-    ) { sourcesDiff: ChangeReport[File] =>
-      if (sourcesDiff.modified.nonEmpty && sourcesDiff.unmodified.nonEmpty) {
-        val others =
-          if (sourcesDiff.modified.size >= 2)
-            s" and ${sourcesDiff.modified.size - 1} others"
-          else ""
-        val firstInstrument = sourcesDiff.modified.head
-        val sourcesMessage  = firstInstrument.toString + others
-        log.warn(
-          s"Instruments sources ($sourcesMessage) have been changed.\n" +
-          s"Forcing recompilation of all instruments to maintain " +
-          s"consistency of generated services files."
-        )
-
-        fragileClassFiles.foreach(_.delete())
-      }
-    }
-  }
-
-  /** This task detects if just a subset of the Instruments has been recompiled
-    * (right now we did not find a way of detecting this before compilation). If
-    * the Instrumentation state is detected to be inconsistent, current
-    * compilation is aborted and classfiles are deleted to ensure that when
-    * re-run Instrumentation will be brought back to a consistent state.
-    *
-    * Without that fix, incremental compilation would not register unchanged
-    * instruments, leading to runtime errors.
-    *
-    * It should replace the default `Compile / compile` task in a project.
-    */
-  lazy val patchedCompile = Def.task {
-    val compilationResult = (Compile / compile).value
-
-    val log                 = streams.value.log
-    val root                = baseDirectory.value
-    val classFilesDirectory = (Compile / classDirectory).value
-    val FragileFiles(_, fragileClassFiles) =
-      getFragileFiles(root, classFilesDirectory)
-
-    val fragileClassFilesStore =
-      streams.value.cacheStoreFactory.make("instruments_classfiles")
-
-    Tracked.diffInputs(fragileClassFilesStore, FileInfo.lastModified)(
-      fragileClassFiles.toSet
-    ) { sourcesDiff: ChangeReport[File] =>
-      if (sourcesDiff.modified.nonEmpty && sourcesDiff.unmodified.nonEmpty) {
-        fragileClassFiles.foreach(_.delete())
-
-        val projectName = name.value
-        log.error(
-          "Truffle Instrumentation is not up to date, " +
-          "which will lead to runtime errors\n" +
-          "Fixes have been applied to ensure consistent Instrumentation state, " +
-          "but compilation has to be triggered again.\n" +
-          "Please re-run the previous command.\n" +
-          "(If this for some reason fails, " +
-          s"please do a clean build of the $projectName project)"
-        )
-
-        throw new RuntimeException("Please re-run last command")
-      }
-    }
-
-    compilationResult
-  }
-
-  /** Deletes the compiled instrumentation class files, forcing all of them to
-    * be recompiled.
-    *
-    * Since all instruments are recompiled at once, the service state should be
-    * consistent as all of them will be re-registered.
-    */
-  def cleanInstruments = Def.task {
-    val log                 = streams.value.log
-    val root                = baseDirectory.value
-    val classFilesDirectory = (Compile / classDirectory).value
-    val FragileFiles(_, fragileClassFiles) =
-      getFragileFiles(root, classFilesDirectory)
-    fragileClassFiles.foreach { file =>
-      if (file.exists()) {
-        log.info(s"[clean-instruments] Removing $file")
-        file.delete()
-      } else {
-        log.info(s"[clean-instruments] $file was already missing")
-      }
-    }
-    log.info(
-      "All fragile class files have been deleted. The next compilation " +
-      "should be forced to recompile all of them, preserving instrumentation " +
-      "configuration consistency."
-    )
-  }
-
-  private case class FragileFiles(sources: Seq[File], classFiles: Seq[File])
-
-  private def getFragileFiles(
-    root: File,
-    classFilesDirectory: File
-  ): FragileFiles = {
-    val fragileSources =
-      (file(s"$root/src/main/java/") ** "*Instrument.java").get ++
-      Seq(
-        file(s"$root/src/main/java/org/enso/interpreter/Language.java"),
-        file(s"$root/src/main/java/org/enso/interpreter/epb/EpbLanguage.java")
-      )
-    val fragileClassFiles =
-      (classFilesDirectory ** "*Instrument.class").get ++
-      Seq(
-        file(s"$classFilesDirectory/org/enso/interpreter/Language.class"),
-        file(s"$classFilesDirectory/org/enso/interpreter/epb/EpbLanguage.class")
-      )
-    FragileFiles(fragileSources, fragileClassFiles)
-  }
-}

project/GatherLicenses.scala

@@ -146,6 +146,8 @@ object GatherLicenses {
         val currentInputHash =
           ReportState.computeInputHash(distributionDescription)
         if (currentInputHash != reviewState.inputHash) {
+          log.info("Input hash computed from build.sbt: " + currentInputHash)
+          log.info("Input hash stored in metadata: " + reviewState.inputHash)
           warnAndThrow(
             s"Report for the $name is not up to date - " +
             s"it seems that some dependencies were added or removed."
@@ -180,6 +182,8 @@ object GatherLicenses {
 
     val currentOutputHash = ReportState.computeOutputHash(packageDestination)
     if (currentOutputHash != reportState.outputHash) {
+      log.info("Output hash computed from build.sbt: " + currentOutputHash)
+      log.info("Output hash stored in metadata: " + reportState.outputHash)
       log.error(
         s"Generated package at $packageDestination seems to be not up-to-date."
       )

project/src/main/scala/licenses/frontend/DependencyFilter.scala

@@ -1,5 +1,6 @@
 package src.main.scala.licenses.frontend
 
+import com.typesafe.sbt.license.DepModuleInfo
 import src.main.scala.licenses.DependencyInformation
 
 /** Filters out irrelevant dependencies.
@@ -13,5 +14,10 @@ object DependencyFilter {
   /** Decides if the dependency should be kept for further processing.
     */
   def shouldKeep(dependencyInformation: DependencyInformation): Boolean =
-    dependencyInformation.moduleInfo.organization != "org.enso"
+    shouldKeep(dependencyInformation.moduleInfo)
+
+  /** Decides if the module should be kept for further processing.
+    */
+  def shouldKeep(moduleInfo: DepModuleInfo): Boolean =
+    moduleInfo.organization != "org.enso"
 }

project/src/main/scala/licenses/report/ReportState.scala

@@ -3,11 +3,8 @@ package src.main.scala.licenses.report
 import java.security.MessageDigest
 
 import sbt.{File, IO, Logger}
-import src.main.scala.licenses.{
+import src.main.scala.licenses.frontend.DependencyFilter
-  DistributionDescription,
+import src.main.scala.licenses.{DistributionDescription, FilesHelper, PortablePath}
-  FilesHelper,
-  PortablePath
-}
 
 import scala.util.control.NonFatal
 
@@ -87,7 +84,7 @@ object ReportState {
       digest.update(sbtComponent.name.getBytes)
       val dependencies =
         sbtComponent.licenseReport.licenses.sortBy(_.module.toString)
-      for (dep <- dependencies) {
+      for (dep <- dependencies.filter(d => DependencyFilter.shouldKeep(d.module))) {
         digest.update(dep.module.toString.getBytes)
         digest.update(dep.license.name.getBytes)
       }

tools/legal-review/engine/report-state

@@ -1,3 +1,3 @@
-E955B4896E24F176DC2DE1E947D0D320B7B688CC43E88BA0AD8BF3B75473356E
+F584041D9C65EE3A64897906C912A288C33868416BDA1C24C9892C3C06E597CD
 741A2D55D2B3911B0426A0472585A2966D5B9E381B6938EE1209A68E6F76C5AB
 0

tools/legal-review/launcher/report-state

@@ -1,3 +1,3 @@
-DDB2BFB46423B9AC369876C9DDAA6EA0F64FBB0B68C847C8D632F51F16E7D01F
+807B8CAF24F78001A73CDFC31DDFA2CB129CDEA07FFCF907ED994FEC7EC4003C
 FCC80E706112594F80CDC45199FDC1B0A90EF165DC5B5AB9171C5C185EC2B9E2
 0

tools/legal-review/project-manager/report-state

@@ -1,3 +1,3 @@
-FE0E365572AF01D432BC54F8586C13CF6FB175F31E6700795D4FE4F944AE6482
+E8BCE903881AE1141DA4E2CAAC72D673680955BDA2AF64B822C62A5AF46DBFE8
 0758086E9F188E70B4D212BD957A2DC12AB1D51A56E68F042BC94919B3F2E163
 0