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Reintroduce Endpoint.
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@ -6,6 +6,7 @@ module SES.Myers
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, EditGraph(..)
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, EditGraph(..)
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, Distance(..)
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, Distance(..)
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, Diagonal(..)
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, Diagonal(..)
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, Endpoint(..)
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, ses
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, ses
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, MyersState
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, MyersState
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) where
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) where
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@ -41,6 +42,7 @@ newtype Distance = Distance { unDistance :: Int }
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newtype Diagonal = Diagonal { unDiagonal :: Int }
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newtype Diagonal = Diagonal { unDiagonal :: Int }
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deriving (Eq, Ix, Ord, Show)
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deriving (Eq, Ix, Ord, Show)
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data Endpoint a b = Endpoint { x :: !Int, y :: !Int, script :: !(EditScript a b) }
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-- API
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-- API
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@ -66,12 +68,12 @@ runSES eq (EditGraph as bs)
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where -- | Search an edit graph for the shortest edit script along a specific diagonal, moving onto a given diagonal from one of its in-bounds adjacent diagonals (if any), and sliding down any diagonal edges eagerly.
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where -- | Search an edit graph for the shortest edit script along a specific diagonal, moving onto a given diagonal from one of its in-bounds adjacent diagonals (if any), and sliding down any diagonal edges eagerly.
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searchAlongK (Diagonal k) = do
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searchAlongK (Diagonal k) = do
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v <- get
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v <- get
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let getK k = let (x, script) = v ! Diagonal k in (x, x - k, script)
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let getK k = let (x, script) = v ! Diagonal k in Endpoint x (x - k) script
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prev = getK (pred k)
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prev = {-# SCC prev #-} getK (pred k)
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next = getK (succ k)
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next = {-# SCC next #-} getK (succ k)
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(x', _, script) = slideFrom $! if d == 0 || k < negate m || k > n then
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Endpoint x' _ script = slideFrom $! if d == 0 || k < negate m || k > n then
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-- The top-left corner, or otherwise out-of-bounds.
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-- The top-left corner, or otherwise out-of-bounds.
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(0, 0, [])
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Endpoint 0 0 []
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else if k == negate d || k == negate m then
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else if k == negate d || k == negate m then
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-- The lower/left extent of the search region or edit graph, whichever is smaller.
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-- The lower/left extent of the search region or edit graph, whichever is smaller.
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moveDownFrom next
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moveDownFrom next
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@ -84,26 +86,25 @@ runSES eq (EditGraph as bs)
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else
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else
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-- The upper/right extent of the search region or edit graph, whichever is smaller.
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-- The upper/right extent of the search region or edit graph, whichever is smaller.
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moveRightFrom prev
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moveRightFrom prev
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put (v Array.// [(Diagonal k, (x', script))])
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put ({-# SCC update #-} v Array.// [(Diagonal k, (x', script))])
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return $! if x' >= n && (x' - k) >= m then
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return $! if x' >= n && (x' - k) >= m then
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Just (script, d)
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Just (script, d)
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else
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else
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Nothing
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Nothing
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where -- | Move downward from a given vertex, inserting the element for the corresponding row.
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where -- | Move downward from a given vertex, inserting the element for the corresponding row.
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moveDownFrom (x, y, script) = (x, succ y, if y < m then That (bs ! y) : script else script)
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moveDownFrom (Endpoint x y script) = Endpoint x (succ y) (if y < m then That (bs ! y) : script else script)
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-- | Move rightward from a given vertex, deleting the element for the corresponding column.
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-- | Move rightward from a given vertex, deleting the element for the corresponding column.
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moveRightFrom (x, y, script) = (succ x, y, if x < n then This (as ! x) : script else script)
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moveRightFrom (Endpoint x y script) = Endpoint (succ x) y (if x < n then This (as ! x) : script else script)
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-- | Slide down any diagonal edges from a given vertex.
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-- | Slide down any diagonal edges from a given vertex.
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slideFrom (x, y, script)
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slideFrom (Endpoint x y script)
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| x >= 0, x < n
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| x >= 0, x < n
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, y >= 0, y < m
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, y >= 0, y < m
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, a <- as ! x
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, a <- as ! x
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, b <- bs ! y
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, b <- bs ! y
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, a `eq` b = slideFrom (succ x, y, These a b : script)
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, a `eq` b = slideFrom (Endpoint (succ x) y (These a b : script))
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| otherwise = ( x, succ y, script)
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| otherwise = (Endpoint x (succ y) script)
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x (x, _, _) = x
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-- Implementation details
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-- Implementation details
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