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MACS2: 2.2.7.1 -> 2.2.8

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Diff: https://github.com/macs3-project/MACS/compare/v2.2.7.1...v2.2.8
changelog: https://github.com/macs3-project/MACS/releases/tag/v2.2.8
This commit is contained in:
natsukium 2023-06-09 23:05:27 +09:00 committed by Anderson Torres
parent 1f5a30f310
commit 12cab182ae
1 changed files with 21 additions and 10 deletions
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31
pkgs/applications/science/biology/MACS2/default.nix
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@ -2,32 +2,43 @@
python3.pkgs.buildPythonPackage rec { python3.pkgs.buildPythonPackage rec {
pname = "MACS2"; pname = "MACS2";
version = "2.2.7.1"; version = "2.2.8";
format = "pyproject";
src = fetchPypi { src = fetchPypi {
inherit pname version; inherit pname version;
sha256 = "1rcxj943kgzs746f5jrb72x1cp4v50rk3qmad0m99a02vndscb5d"; hash = "sha256-KgpDasidj4yUoeQQaQA3dg5eN5Ka1xnFRpbnTvhKmOA=";
}; };
postPatch = '' postPatch = ''
# remove version check which breaks on 3.10 # prevent setup.py from installing numpy
substituteInPlace setup.py \ substituteInPlace setup.py \
--replace 'if float(sys.version[:3])<3.6:' 'if False:' --replace "subprocess.call([sys.executable, \"-m\", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd)" "0"
''; '';
nativeBuildInputs = with python3.pkgs; [
cython
setuptools
];
propagatedBuildInputs = with python3.pkgs; [ numpy ]; propagatedBuildInputs = with python3.pkgs; [ numpy ];
# To prevent ERROR: diffpeak_cmd (unittest.loader._FailedTest) for obsolete nativeCheckInputs = [
# function (ImportError: Failed to import test module: diffpeak_cmd) python3.pkgs.unittestCheckHook
doCheck = false; ];
unittestFlagsArray = [
"-s"
"test"
];
pythonImportsCheck = [ "MACS2" ]; pythonImportsCheck = [ "MACS2" ];
meta = with lib; { meta = with lib; {
description = "Model-based Analysis for ChIP-Seq"; description = "Model-based Analysis for ChIP-Seq";
homepage = "https://github.com/macs3-project/MACS/";
changelog = "https://github.com/macs3-project/MACS/releases/tag/v${version}";
license = licenses.bsd3; license = licenses.bsd3;
maintainers = with maintainers; [ gschwartz ]; maintainers = with maintainers; [ gschwartz ];
platforms = platforms.linux;
# error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘use_tracing’; did you mean ‘tracing’?
broken = true;
}; };
} }