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libminc: fix build after hdf5 upgrade by using hdf5_1_8

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This commit is contained in:
Orivej Desh 2017-12-01 00:36:15 +00:00
parent dd7738d13f
commit 1f99fd6965
4 changed files with 25 additions and 14 deletions
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16
pkgs/applications/science/biology/minc-tools/default.nix
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@ -1,12 +1,14 @@
{ stdenv, fetchurl, perl, cmake, flex, bison, libminc }:
{ stdenv, fetchFromGitHub, perl, cmake, flex, bison, libminc }:
stdenv.mkDerivation rec {
_name = "minc-tools";
name = "${_name}-2.3.00";
name = "${pname}-2.3.00";
pname = "minc-tools";
src = fetchurl {
url = "https://github.com/BIC-MNI/${_name}/archive/${_name}-2-3-00.tar.gz";
sha256 = "1d457vrwy2fl6ga2axnwn1cchkx2rmgixfzyb1zjxb06cxkfj1dm";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = builtins.replaceStrings [ "." ] [ "-" ] name;
sha256 = "0px5paprx4ds9aln3jdg1pywszgyz2aykgkdbj1y8gc1lwcizsl9";
};
nativeBuildInputs = [ cmake flex bison ] ++ (if doCheck then [ perl ] else [ ]);
@ -17,6 +19,8 @@ stdenv.mkDerivation rec {
checkPhase = "ctest";
doCheck = false;
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = https://github.com/BIC-MNI/minc-tools;
description = "Command-line utilities for working with MINC files";

16
pkgs/development/libraries/libminc/default.nix
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@ -1,12 +1,14 @@
{ stdenv, fetchurl, cmake, zlib, netcdf, hdf5 }:
{ stdenv, fetchFromGitHub, cmake, zlib, netcdf, hdf5 }:
stdenv.mkDerivation rec {
_name = "libminc";
name = "${_name}-2.3.00";
name = "${pname}-2.3.00";
pname = "libminc";
src = fetchurl {
url = "https://github.com/BIC-MNI/${_name}/archive/${_name}-2-3-00.tar.gz";
sha256 = "04ngqx4wkssxs9qqcgq2bvfs1cldcycmpcx587wy3b3m6lwf004c";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = builtins.replaceStrings [ "." ] [ "-" ] name;
sha256 = "1gv1rq1q1brhglll2256cm6sns77ph6fvgbzk3ihkzq46y07yi9s";
};
nativeBuildInputs = [ cmake ];
@ -18,6 +20,8 @@ stdenv.mkDerivation rec {
checkPhase = "ctest";
doCheck = true;
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = https://github.com/BIC-MNI/libminc;
description = "Medical imaging library based on HDF5";

1
pkgs/top-level/aliases.nix
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@ -105,6 +105,7 @@ mapAliases (rec {
manpages = man-pages; # added 2015-12-06
man_db = man-db; # added 2016-05
midoriWrapper = midori; # added 2015-01
minc_tools = minc-tools; # 2017-12
mlt-qt5 = libsForQt5.mlt; # added 2015-12-19
module_init_tools = kmod; # added 2016-04-22
mssys = ms-sys; # added 2015-12-13

6
pkgs/top-level/all-packages.nix
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@ -9472,7 +9472,9 @@ with pkgs;
libmilter = callPackage ../development/libraries/libmilter { };
libminc = callPackage ../development/libraries/libminc { };
libminc = callPackage ../development/libraries/libminc {
hdf5 = hdf5_1_8;
};
libmirage = callPackage ../misc/emulators/cdemu/libmirage.nix { };
@ -18597,7 +18599,7 @@ with pkgs;
mrbayes = callPackage ../applications/science/biology/mrbayes { };
minc_tools = callPackage ../applications/science/biology/minc-tools { };
minc-tools = callPackage ../applications/science/biology/minc-tools { };
ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { };