Merge master into staging-next

maintainers/scripts/luarocks-packages.csv

@@ -68,7 +68,7 @@ luautf8,,,,,,pstn
 luazip,,,,,,
 lua-yajl,,,,,,pstn
 luuid,,,,,,
-luv,,,,1.30.0-0,,
+luv,,,,1.42.0-0,,
 lyaml,,,,,,lblasc
 markdown,,,,,,
 mediator_lua,,,,,,

pkgs/applications/audio/spot/default.nix

@@ -59,6 +59,9 @@ stdenv.mkDerivation rec {
     libpulseaudio
   ];
 
+  # https://github.com/xou816/spot/issues/313
+  mesonBuildType = "release";
+
   postPatch = ''
     chmod +x build-aux/cargo.sh
     patchShebangs build-aux/cargo.sh build-aux/meson/postinstall.py

pkgs/applications/editors/neovim/default.nix

@@ -32,13 +32,13 @@ let
 in
   stdenv.mkDerivation rec {
     pname = "neovim-unwrapped";
-    version = "0.5.0";
+    version = "0.5.1";
 
     src = fetchFromGitHub {
       owner = "neovim";
       repo = "neovim";
       rev = "v${version}";
-      sha256 = "0lgbf90sbachdag1zm9pmnlbn35964l3khs27qy4462qzpqyi9fi";
+      sha256 = "0b2gda9h14lvwahrr7kq3ix8wsw99g4ngy1grmhv5544n93ypcyk";
     };
 
     patches = [

pkgs/applications/gis/qgis/unwrapped.nix

@@ -1,9 +1,42 @@
-{ mkDerivation, lib, fetchFromGitHub, cmake, ninja, flex, bison, proj, geos
+{ lib
-, xlibsWrapper, sqlite, gsl, qwt, fcgi, python3Packages, libspatialindex
+, mkDerivation
-, libspatialite, postgresql, txt2tags, openssl, libzip, hdf5, netcdf, exiv2
+, fetchFromGitHub
-, protobuf, qtbase, qtsensors, qca-qt5, qtkeychain, qscintilla, qtserialport
+, fetchpatch
-, qtxmlpatterns, withGrass ? true, grass, withWebKit ? true, qtwebkit }:
+, cmake
-with lib;
+, ninja
+, flex
+, bison
+, proj
+, geos
+, xlibsWrapper
+, sqlite
+, gsl
+, qwt
+, fcgi
+, python3Packages
+, libspatialindex
+, libspatialite
+, postgresql
+, txt2tags
+, openssl
+, libzip
+, hdf5
+, netcdf
+, exiv2
+, protobuf
+, qtbase
+, qtsensors
+, qca-qt5
+, qtkeychain
+, qscintilla
+, qtserialport
+, qtxmlpatterns
+, withGrass ? true
+, grass
+, withWebKit ? true
+, qtwebkit
+}:
+
 let
   pythonBuildInputs = with python3Packages; [
     qscintilla-qt5
@@ -25,8 +58,7 @@ let
   ];
 in mkDerivation rec {
   version = "3.16.10";
-  pname = "qgis";
+  pname = "qgis-unwrapped";
-  name = "${pname}-unwrapped-${version}";
 
   src = fetchFromGitHub {
     owner = "qgis";
@@ -35,6 +67,13 @@ in mkDerivation rec {
     sha256 = "sha256-/lsfyTDlkZNIVHg5qgZW7qfOyTC2+1r3ZbsnQmEdy30=";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/qgis/QGIS/commit/fc1ac8bef8dcc3194857ecd32519aca4867b4fa1.patch";
+      sha256 = "106smg3drx8c7yxzfhd1c7xrq757l5cfxx8lklihyvr4a7wc9gpy";
+    })
+  ];
+
   passthru = {
     inherit pythonBuildInputs;
     inherit python3Packages;

pkgs/applications/misc/osm2xmap/default.nix

@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchFromGitHub, libroxml, proj, libyamlcpp, boost } :
+{ lib, stdenv, fetchFromGitHub, libroxml, proj_7, libyamlcpp, boost } :
 
 stdenv.mkDerivation rec {
   pname = "osm2xmap";
@@ -14,14 +14,14 @@ stdenv.mkDerivation rec {
   makeFlags = [
     "GIT_VERSION=${version}"
     "GIT_TIMESTAMP="
-    "SHAREDIR=${placeholder "out"}/share/osm2xmap"
+    "SHAREDIR=${placeholder "out"}/share/osm2xmap/"
     "INSTALL_BINDIR=${placeholder "out"}/bin"
     "INSTALL_MANDIR=${placeholder "out"}/share/man/man1"
   ];
 
   NIX_CFLAGS_COMPILE = "-DACCEPT_USE_OF_DEPRECATED_PROJ_API_H";
 
-  buildInputs = [ libroxml proj libyamlcpp boost ];
+  buildInputs = [ libroxml proj_7 libyamlcpp boost ];
 
   meta = with lib; {
     homepage = "https://github.com/sembruk/osm2xmap";

pkgs/applications/misc/survex/default.nix

@@ -6,7 +6,7 @@
 , wxGTK30-gtk3
 , wxmac
 , ffmpeg
-, proj
+, proj_7
 , perl532
 , unscii
 , python
@@ -29,7 +29,7 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ docbook5 docbook2x autoreconfHook pkg-config perlenv python ];
 
   buildInputs = [
-    libGL libGLU ffmpeg proj
+    libGL libGLU ffmpeg proj_7
   ] ++ lib.optionals stdenv.hostPlatform.isDarwin [
     wxmac Carbon Cocoa
   ] ++ lib.optionals stdenv.hostPlatform.isLinux [

pkgs/applications/misc/xygrib/default.nix

@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchFromGitHub, wrapQtAppsHook, cmake, bzip2, qtbase, qttools, libnova, proj, libpng, openjpeg }:
+{ lib, stdenv, fetchFromGitHub, wrapQtAppsHook, cmake, bzip2, qtbase, qttools, libnova, proj_7, libpng, openjpeg }:
 
 stdenv.mkDerivation rec {
   version = "1.2.6.1";
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [ cmake qttools wrapQtAppsHook ];
-  buildInputs = [ bzip2 qtbase libnova proj openjpeg libpng ];
+  buildInputs = [ bzip2 qtbase libnova proj_7 openjpeg libpng ];
   cmakeFlags = [ "-DOPENJPEG_INCLUDE_DIR=${openjpeg.dev}/include/openjpeg-${lib.versions.majorMinor openjpeg.version}" ]
     ++ lib.optionals stdenv.isDarwin [ "-DLIBNOVA_LIBRARY=${libnova}/lib/libnova.dylib" ];
 

pkgs/applications/science/misc/gplates/default.nix

@@ -1,31 +1,69 @@
-{ lib, stdenv, fetchurl, qt4, qwt6_qt4, libGLU, libGL, glew, gdal, cgal
+{ lib
-, proj, boost, cmake, python2, doxygen, graphviz, gmp, mpfr }:
+, mkDerivation
+, fetchurl
+, cmake
+, doxygen
+, graphviz
+, boost
+, cgal_5
+, gdal
+, glew
+, gmp
+, libGL
+, libGLU
+, mpfr
+, proj
+, python3
+, qtxmlpatterns
+, qwt
+}:
 
-stdenv.mkDerivation rec {
+let
+  python = python3.withPackages (ps: with ps; [
+    numpy
+  ]);
+  boost' = boost.override {
+    enablePython = true;
+    inherit python;
+  };
+  cgal = cgal_5.override {
+    boost = boost';
+  };
+in mkDerivation rec {
   pname = "gplates";
-  version = "2.2.0";
+  version = "2.3.0";
 
   src = fetchurl {
-    url = "mirror://sourceforge/gplates/${pname}-${version}-unixsrc.tar.bz2";
+    name = "gplates_${version}_src.tar.bz2";
-    sha256 = "1jrcv498vpcs8xklhbsgg12yfa90f96p2mwq6x5sjnrlpf8mh50b";
+    url = "https://www.earthbyte.org/download/8421/?uid=b89bb31428";
+    sha256 = "0lrcmcxc924ixddii8cyglqlwwxvk7f00g4yzbss5i3fgcbh8n96";
   };
 
-  nativeBuildInputs = [ cmake ];
+  nativeBuildInputs = [
-  buildInputs = [
+    cmake
-    qt4 qwt6_qt4 libGLU libGL glew gdal cgal proj python2
+    doxygen
-    doxygen graphviz gmp mpfr
+    graphviz
-    (boost.override {
-      enablePython = true;
-      python = python2;
-    })
   ];
 
-  NIX_CFLAGS_LINK="-ldl -lpthread -lutil";
+  buildInputs = [
+    boost'
+    cgal
+    gdal
+    glew
+    gmp
+    libGL
+    libGLU
+    mpfr
+    proj
+    python
+    qtxmlpatterns
+    qwt
+  ];
 
   meta = with lib; {
     description = "Desktop software for the interactive visualisation of plate-tectonics";
     homepage = "https://www.gplates.org";
-    license = licenses.gpl2;
+    license = licenses.gpl2Only;
     platforms = platforms.all;
   };
 }

pkgs/applications/version-management/git-and-tools/thicket/default.nix

@@ -1,10 +1,10 @@
 { lib
 , fetchFromGitHub
-, crystal_0_33
+, crystal_1_0
 }:
 
 let
-  crystal = crystal_0_33;
+  crystal = crystal_1_0;
 
 in crystal.buildCrystalPackage rec {
   pname = "thicket";

pkgs/applications/version-management/git-and-tools/thicket/shards.nix

@@ -2,7 +2,7 @@
   ameba = {
     owner = "veelenga";
     repo = "ameba";
-    rev = "v0.10.0";
+    rev = "v0.14.3";
-    sha256 = "1yjxzwdhigsyjn0qp362jkj85qvg4dsyzal00pgr1srnh2xry912";
+    sha256 = "1cfr95xi6hsyxw1wlrh571hc775xhwmssk3k14i8b7dgbwfmm5x1";
   };
 }

pkgs/development/compilers/crystal/build-package.nix

@@ -10,7 +10,7 @@
 , format ? "make"
 , installManPages ? true
   # Specify binaries to build in the form { foo.src = "src/foo.cr"; }
-  # The default `crystal build` options can be overridden with { foo.options = [ "--no-debug" ]; }
+  # The default `crystal build` options can be overridden with { foo.options = [ "--optionname" ]; }
 , crystalBinaries ? { }
 , ...
 }@args:
@@ -32,8 +32,7 @@ let
     })
     (import shardsFile));
 
-  # we previously had --no-debug here but that is not recommended by upstream
+  defaultOptions = [ "--release" "--progress" "--verbose" "--no-debug" ];
-  defaultOptions = [ "--release" "--progress" "--verbose" ];
 
   buildDirectly = shardsFile == null || crystalBinaries != { };
 
@@ -120,7 +119,7 @@ stdenv.mkDerivation (mkDerivationArgs // {
 
   installCheckPhase = args.installCheckPhase or ''
     for f in $out/bin/*; do
-      $f --help
+      $f --help > /dev/null
     done
   '';
 

pkgs/development/compilers/crystal/default.nix

@@ -56,6 +56,7 @@ let
       buildCommand = ''
         mkdir -p $out
         tar --strip-components=1 -C $out -xf ${src}
+        patchShebangs $out/bin/crystal
       '';
     };
 
@@ -93,6 +94,10 @@ let
       outputs = [ "out" "lib" "bin" ];
 
       postPatch = ''
+        export TMP=$(mktemp -d)
+        export HOME=$TMP
+        mkdir -p $HOME/test
+
         # Add dependency of crystal to docs to avoid issue on flag changes between releases
         # https://github.com/crystal-lang/crystal/pull/8792#issuecomment-614004782
         substituteInPlace Makefile \
@@ -103,39 +108,35 @@ let
 
         ln -sf spec/compiler spec/std
 
-        # Dirty fix for when no sandboxing is enabled
+        mkdir -p $TMP/crystal
-        rm -rf /tmp/crystal
-        mkdir -p /tmp/crystal
 
         substituteInPlace spec/std/file_spec.cr \
           --replace '/bin/ls' '${coreutils}/bin/ls' \
-          --replace '/usr/share' '/tmp/crystal' \
+          --replace '/usr/share' "$TMP/crystal" \
-          --replace '/usr' '/tmp'
+          --replace '/usr' "$TMP" \
+          --replace '/tmp' "$TMP"
 
         substituteInPlace spec/std/process_spec.cr \
           --replace '/bin/cat' '${coreutils}/bin/cat' \
           --replace '/bin/ls' '${coreutils}/bin/ls' \
           --replace '/usr/bin/env' '${coreutils}/bin/env' \
           --replace '"env"' '"${coreutils}/bin/env"' \
-          --replace '"/usr"' '"/tmp"'
+          --replace '/usr' "$TMP" \
-
+          --replace '/tmp' "$TMP"
-        substituteInPlace spec/std/socket/tcp_server_spec.cr \
-          --replace '{% if flag?(:gnu) %}"listen: "{% else %}"bind: "{% end %}' '"bind: "'
 
         substituteInPlace spec/std/system_spec.cr \
           --replace '`hostname`' '`${hostname}/bin/hostname`'
 
-        # See https://github.com/crystal-lang/crystal/pull/8640
-        substituteInPlace spec/std/http/cookie_spec.cr \
-          --replace '01 Jan 2020' '01 Jan #{Time.utc.year + 2}'
-
         # See https://github.com/crystal-lang/crystal/issues/8629
         substituteInPlace spec/std/socket/udp_socket_spec.cr \
           --replace 'it "joins and transmits to multicast groups"' 'pending "joins and transmits to multicast groups"'
+      '';
 
-        # See https://github.com/crystal-lang/crystal/pull/8699
+      # Defaults are 4
-        substituteInPlace spec/std/xml/xml_spec.cr \
+      preBuild = ''
-          --replace 'it "handles errors"' 'pending "handles errors"'
+        export CRYSTAL_WORKERS=$NIX_BUILD_CORES
+        export threads=$NIX_BUILD_CORES
+        export CRYSTAL_CACHE_DIR=$TMP
       '';
 
       buildInputs = commonBuildInputs extraBuildInputs;
@@ -197,9 +198,6 @@ let
       checkTarget = "compiler_spec";
 
       preCheck = ''
-        export HOME=/tmp
-        mkdir -p $HOME/test
-
         export LIBRARY_PATH=${lib.makeLibraryPath checkInputs}:$LIBRARY_PATH
         export PATH=${lib.makeBinPath checkInputs}:$PATH
       '';
@@ -214,60 +212,26 @@ let
         license = licenses.asl20;
         maintainers = with maintainers; [ david50407 fabianhjr manveru peterhoeg ];
         platforms = builtins.attrNames archs;
-        # Error running at_exit handler: Nil assertion failed
+        broken = lib.versionOlder version "0.36.1" && stdenv.isDarwin;
-        broken = lib.versions.minor version == "32" && stdenv.isDarwin;
       };
     })
   );
 
 in
 rec {
-  binaryCrystal_0_31 = genericBinary {
+  binaryCrystal_0_36 = genericBinary {
-    version = "0.31.1";
+    version = "0.36.1";
     sha256s = {
-      x86_64-linux = "0r8salf572xrnr4m6ll9q5hz6jj8q7ff1rljlhmqb1r26a8mi2ih";
+      x86_64-linux = "065vzq34g7hgzl2mrzy9gwwsfikc78nj7xxsbrk67r6rz0a7bk1q";
-      i686-linux = "0hridnis5vvrswflx0q67xfg5hryhz6ivlwrb9n4pryj5d1gwjrr";
+      i686-linux = "18m4b1lnd682i5ygbg6cljqjny60nn2mlrzrk765h2ip6fljqbm1";
-      x86_64-darwin = "1dgxgv0s3swkc5cwawzgpbc6bcd2nx4hjxc7iw2h907y1vgmbipz";
+      x86_64-darwin = "0xggayk92zh64pb5sz77n12hkcd1hg8kw90z7gb18594q551sf1v";
     };
   };
 
-  crystal_0_31 = generic {
-    version = "0.31.1";
-    sha256 = "1dswxa32w16gnc6yjym12xj7ibg0g6zk3ngvl76lwdjqb1h6lwz8";
-    doCheck = false; # 5 checks are failing now
-    binary = binaryCrystal_0_31;
-  };
-
-  crystal_0_32 = generic {
-    version = "0.32.1";
-    sha256 = "120ndi3nhh2r52hjvhwfb49cdggr1bzdq6b8xg7irzavhjinfza6";
-    binary = crystal_0_31;
-  };
-
-  crystal_0_33 = generic {
-    version = "0.33.0";
-    sha256 = "1zg0qixcws81s083wrh54hp83ng2pa8iyyafaha55mzrh8293jbi";
-    binary = crystal_0_32;
-  };
-
-  crystal_0_34 = generic {
-    version = "0.34.0";
-    sha256 = "110lfpxk9jnqyznbfnilys65ixj5sdmy8pvvnlhqhc3ccvrlnmq4";
-    binary = crystal_0_33;
-  };
-
-  crystal_0_35 = generic {
-    version = "0.35.1";
-    sha256 = "0p51bjl1nsvwsm64lqq421dcsxa201w7wwq8plw4r8wqarpq0g69";
-    binary = crystal_0_34;
-    # Needs git to build as per https://github.com/crystal-lang/crystal/issues/9789
-    extraBuildInputs = [ git ];
-  };
-
   crystal_0_36 = generic {
     version = "0.36.1";
     sha256 = "sha256-5rjrvwZKM4lHpmxLyUVbi0Zw98xT+iJKonxwfUwS/Wk=";
-    binary = crystal_0_35;
+    binary = binaryCrystal_0_36;
   };
 
   crystal_1_0 = generic {

pkgs/development/interpreters/lua-5/build-lua-package.nix

@@ -82,66 +82,25 @@ let
   # configured trees)
   luarocks_config = "luarocks-config.lua";
   luarocks_content = let
-    extraVariablesStr = lib.concatStringsSep "\n "
+    generatedConfig = lua.pkgs.lib.generateLuarocksConfig {
-      (lib.mapAttrsToList (k: v: "${k}='${v}';") extraVariables);
+      inherit externalDeps;
-  in ''
+      inherit extraVariables;
-    local_cache = ""
+      inherit rocksSubdir;
-    -- To prevent collisions when creating environments, we install the rock
+      inherit requiredLuaRocks;
-    -- files into per-package subdirectories
+    };
-    rocks_subdir = '${rocksSubdir}'
+    in
-    -- Then we need to tell luarocks where to find the rock files per
+      ''
-    -- dependency
+      ${generatedConfig}
-    rocks_trees = {
-      ${lib.concatStringsSep "\n, " rocksTrees}
-    }
-  '' + lib.optionalString lua.pkgs.isLuaJIT ''
-    -- Luajit provides some additional functionality built-in; this exposes
-    -- that to luarock's dependency system
-    rocks_provided = {
-      jit='${lua.luaversion}-1';
-      ffi='${lua.luaversion}-1';
-      luaffi='${lua.luaversion}-1';
-      bit='${lua.luaversion}-1';
-    }
-  '' + ''
-    -- For single-output external dependencies
-    external_deps_dirs = {
-      ${lib.concatStringsSep "\n, " externalDepsDirs}
-    }
-    variables = {
-      -- Some needed machinery to handle multiple-output external dependencies,
-      -- as per https://github.com/luarocks/luarocks/issues/766
-      ${lib.optionalString (lib.length depVariables > 0) ''
-        ${lib.concatStringsSep "\n  " depVariables}''}
-      ${extraVariablesStr}
-    }
       ${extraConfig}
       '';
 
   rocksSubdir = "${attrs.pname}-${version}-rocks";
 
-  externalDepsDirs = map
-    (x: "'${builtins.toString x}'")
-    (lib.filter (lib.isDerivation) externalDeps);
-
-  rocksTrees = lib.imap0
-    (i: dep: "{ name = [[dep-${toString i}]], root = '${dep}', rocks_dir = '${dep}/${dep.rocksSubdir}' }")
-    requiredLuaRocks;
-
   # Filter out the lua derivation itself from the Lua module dependency
   # closure, as it doesn't have a rock tree :)
   requiredLuaRocks = lib.filter (d: d ? luaModule)
     (lua.pkgs.requiredLuaModules propagatedBuildInputs);
 
-  # Explicitly point luarocks to the relevant locations for multiple-output
-  # derivations that are external dependencies, to work around an issue it has
-  # (https://github.com/luarocks/luarocks/issues/766)
-  depVariables = lib.concatMap ({name, dep}: [
-    "${name}_INCDIR='${lib.getDev dep}/include';"
-    "${name}_LIBDIR='${lib.getLib dep}/lib';"
-    "${name}_BINDIR='${lib.getBin dep}/bin';"
-  ]) externalDeps';
-
   # example externalDeps': [ { name = "CRYPTO"; dep = pkgs.openssl; } ]
   externalDeps' = lib.filter (dep: !lib.isDerivation dep) externalDeps;
 in

pkgs/development/interpreters/lua-5/hooks/default.nix

@@ -0,0 +1,27 @@
+# Hooks for building lua packages.
+{ lua
+, lib
+, makeSetupHook
+, findutils
+, runCommand
+}:
+
+let
+  callPackage = lua.pkgs.callPackage;
+  luaInterpreter = lua.interpreter;
+in {
+
+  lua-setup-hook = LuaPathSearchPaths: LuaCPathSearchPaths:
+    let
+      hook = ./setup-hook.sh;
+    in runCommand "lua-setup-hook.sh" {
+      # hum doesn't seem to like caps !! BUG ?
+      luapathsearchpaths=lib.escapeShellArgs LuaPathSearchPaths;
+      luacpathsearchpaths=lib.escapeShellArgs LuaCPathSearchPaths;
+    } ''
+      cp ${hook} hook.sh
+      substituteAllInPlace hook.sh
+      mv hook.sh $out
+    '';
+
+}

pkgs/development/interpreters/lua-5/setup-hook.nix

@@ -1,15 +0,0 @@
-{ runCommand, lib, }:
-
-LuaPathSearchPaths: LuaCPathSearchPaths:
-
-let
-  hook = ./setup-hook.sh;
-in runCommand "lua-setup-hook.sh" {
-  # hum doesn't seem to like caps !! BUG ?
-  luapathsearchpaths=lib.escapeShellArgs LuaPathSearchPaths;
-  luacpathsearchpaths=lib.escapeShellArgs LuaCPathSearchPaths;
-} ''
-  cp ${hook} hook.sh
-  substituteAllInPlace hook.sh
-  mv hook.sh $out
-''

pkgs/development/libraries/mapnik/default.nix

@@ -96,5 +96,7 @@ stdenv.mkDerivation rec {
     maintainers = with maintainers; [ hrdinka ];
     license = licenses.lgpl21;
     platforms = platforms.all;
+    # https://github.com/mapnik/mapnik/issues/4232
+    broken = lib.versionAtLeast proj.version "8.0.0";
   };
 }

pkgs/development/libraries/proj/7.nix

@@ -0,0 +1,58 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, pkg-config
+, sqlite
+, libtiff
+, curl
+, gtest
+, fetchpatch
+}:
+
+stdenv.mkDerivation rec {
+  pname = "proj";
+  version = "7.2.1";
+
+  src = fetchFromGitHub {
+    owner = "OSGeo";
+    repo = "PROJ";
+    rev = version;
+    sha256 = "0mymvfvs8xggl4axvlj7kc1ksd9g94kaz6w1vdv0x2y5mqk93gx9";
+  };
+
+  patches = [
+    (fetchpatch { # https://github.com/OSGeo/PROJ/issues/2557
+      name = "gie_self_tests-fail.diff"; # included in >= 8.0.1
+      url = "https://github.com/OSGeo/PROJ/commit/6f1a3c4648bf06862dca0b3725cbb3b7ee0284e3.diff";
+      sha256 = "0gapny0a9c3r0x9szjgn86sspjrrf4vwbija77b17w6ci5cq4pdf";
+    })
+  ];
+
+  postPatch = lib.optionalString (version == "7.2.1") ''
+    substituteInPlace CMakeLists.txt \
+      --replace "MAJOR 7 MINOR 2 PATCH 0" "MAJOR 7 MINOR 2 PATCH 1"
+  '';
+
+  outputs = [ "out" "dev"];
+
+  nativeBuildInputs = [ cmake pkg-config ];
+
+  buildInputs = [ sqlite libtiff curl ];
+
+  checkInputs = [ gtest ];
+
+  cmakeFlags = [
+    "-DUSE_EXTERNAL_GTEST=ON"
+  ];
+
+  doCheck = true;
+
+  meta = with lib; {
+    description = "Cartographic Projections Library";
+    homepage = "https://proj4.org";
+    license = licenses.mit;
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ vbgl dotlambda ];
+  };
+}

pkgs/development/libraries/proj/default.nix

@@ -7,33 +7,19 @@
 , libtiff
 , curl
 , gtest
-, fetchpatch
 }:
 
 stdenv.mkDerivation rec {
   pname = "proj";
-  version = "7.2.1";
+  version = "8.1.1";
 
   src = fetchFromGitHub {
     owner = "OSGeo";
     repo = "PROJ";
     rev = version;
-    sha256 = "0mymvfvs8xggl4axvlj7kc1ksd9g94kaz6w1vdv0x2y5mqk93gx9";
+    sha256 = "sha256-Z2nruyowC3NG4Wb8AFBL0PME/zp9D7SwQdMSl6VjH/w=";
   };
 
-  patches = [
-    (fetchpatch { # https://github.com/OSGeo/PROJ/issues/2557
-      name = "gie_self_tests-fail.diff"; # included in >= 8.0.1
-      url = "https://github.com/OSGeo/PROJ/commit/6f1a3c4648bf06862dca0b3725cbb3b7ee0284e3.diff";
-      sha256 = "0gapny0a9c3r0x9szjgn86sspjrrf4vwbija77b17w6ci5cq4pdf";
-    })
-  ];
-
-  postPatch = lib.optionalString (version == "7.2.1") ''
-    substituteInPlace CMakeLists.txt \
-      --replace "MAJOR 7 MINOR 2 PATCH 0" "MAJOR 7 MINOR 2 PATCH 1"
-  '';
-
   outputs = [ "out" "dev"];
 
   nativeBuildInputs = [ cmake pkg-config ];
@@ -44,17 +30,14 @@ stdenv.mkDerivation rec {
 
   cmakeFlags = [
     "-DUSE_EXTERNAL_GTEST=ON"
+    "-DRUN_NETWORK_DEPENDENT_TESTS=OFF"
   ];
 
-  doCheck = stdenv.is64bit;
+  doCheck = true;
-
-  preCheck = ''
-    export HOME=$TMPDIR
-  '';
 
   meta = with lib; {
     description = "Cartographic Projections Library";
-    homepage = "https://proj4.org";
+    homepage = "https://proj.org/";
     license = licenses.mit;
     platforms = platforms.unix;
     maintainers = with maintainers; [ vbgl dotlambda ];

pkgs/development/lua-modules/generated-packages.nix

@@ -23,6 +23,7 @@ alt-getopt = buildLuarocksPackage {
   "date": "2017-01-06T13:50:55+03:00",
   "path": "/nix/store/z72v77cw9188408ynsppwhlzii2dr740-lua-alt-getopt",
   "sha256": "1kq7r5668045diavsqd1j6i9hxdpsk99w8q4zr8cby9y3ws4q6rv",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -50,6 +51,7 @@ argparse = buildLuarocksPackage {
   "date": "2020-07-08T11:17:50+10:00",
   "path": "/nix/store/vjm6c826hgvj7h7vqlbgkfpvijsd8yaf-argparse",
   "sha256": "0idg79d0dfis4qhbkbjlmddq87np75hb2vj41i6prjpvqacvg5v1",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -119,6 +121,7 @@ bit32 = buildLuarocksPackage {
   "date": "2015-02-17T10:44:04+01:00",
   "path": "/nix/store/9kz7kgjmq0w9plrpha866bmwsgp4rfhn-lua-compat-5.2",
   "sha256": "1ipqlbvb5w394qwhm2f3w6pdrgy8v4q8sps5hh3pqz14dcqwakhj",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -171,7 +174,8 @@ cassowary = buildLuarocksPackage {
   "date": "2021-07-19T14:37:34+03:00",
   "path": "/nix/store/rzsbr6gqg8vhchl24ma3p1h4slhk0xp7-cassowary.lua",
   "sha256": "1r668qcvd2a1rx17xp7ajp5wjhyvh2fwn0c60xmw0mnarjb5w1pq",
-  "fetchSubmodules": false,
+  "fetchLFS": false,
+  "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
 }
@@ -179,10 +183,6 @@ cassowary = buildLuarocksPackage {
 
   disabled = (luaOlder "5.1");
   propagatedBuildInputs = [ lua penlight ];
-  checkInputs = [ busted ];
-  # Avoid circular dependency issue with busted / penlight, see:
-  # https://github.com/NixOS/nixpkgs/pull/136453/files#r700982255
-  doCheck = false;
 
   meta = {
     homepage = "https://github.com/sile-typesetter/cassowary.lua";
@@ -196,7 +196,7 @@ compat53 = buildLuarocksPackage {
   pname = "compat53";
   version = "0.7-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/compat53-0.7-1.rockspec";
+    url    = "https://luafr.org/luarocks/compat53-0.7-1.rockspec";
     sha256 = "1r7a3q1cjrcmdycrv2ikgl83irjhxs53sa88v2fdpr9aaamlb101";
   }).outPath;
   src = fetchurl {
@@ -228,6 +228,7 @@ cosmo = buildLuarocksPackage {
   "date": "2016-06-17T05:39:58-07:00",
   "path": "/nix/store/k3p4xc4cfihp4h8aj6vacr25rpcsjd96-cosmo",
   "sha256": "03b5gwsgxd777970d2h6rx86p7ivqx7bry8xmx2r396g3w85qy2p",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -257,6 +258,7 @@ coxpcall = buildLuarocksPackage {
   "date": "2018-02-26T19:53:11-03:00",
   "path": "/nix/store/1q4p5qvr6rlwisyarlgnmk4dx6vp8xdl-coxpcall",
   "sha256": "1k3q1rr2kavkscf99b5njxhibhp6iwhclrjk6nnnp233iwc2jvqi",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -304,6 +306,7 @@ cyrussasl = buildLuarocksPackage {
   "date": "2015-08-21T18:24:54-04:00",
   "path": "/nix/store/s7n7f80pz8k6lvfav55a5rwy5l45vs4l-lua-cyrussasl",
   "sha256": "14kzm3vk96k2i1m9f5zvpvq4pnzaf7s91h5g4h4x2bq1mynzw2s1",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -326,10 +329,11 @@ digestif = buildLuarocksPackage {
 
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
   "url": "https://github.com/astoff/digestif",
-  "rev": "3a9076f76d8121526adcdbb9303d04dd3c721a34",
+  "rev": "9f8f299cf7094d72edbd32a455869751246028b7",
-  "date": "2021-06-24T16:18:41+02:00",
+  "date": "2021-09-25T14:32:42+02:00",
-  "path": "/nix/store/alzrvcxdmdfqqmm0diaxfljyr3jz1zk3-digestif",
+  "path": "/nix/store/ln1zx9cw2b7q4x5vzd6hv5nd01c1gsy3-digestif",
-  "sha256": "110vsqyyp2pvn6nk492a9r56iyzymy0w1f2hvx26pv5x01mxm20x",
+  "sha256": "1cf14m03jvfs1mwaywfgv759jh0ha3pxrnyj7jxjxlsj6cim89v0",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -395,10 +399,11 @@ gitsigns-nvim = buildLuarocksPackage {
 
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
   "url": "https://github.com/lewis6991/gitsigns.nvim",
-  "rev": "daa233aabb4dbc7c870ea7300bcfeef96d49c2a3",
+  "rev": "7e5c1a831f555dc398dd1564489e2b8a5c867754",
-  "date": "2021-08-29T23:08:52+01:00",
+  "date": "2021-09-25T16:49:34+01:00",
-  "path": "/nix/store/4685c871dzh0kqf3fs5iqmaysag4m9nx-gitsigns.nvim",
+  "path": "/nix/store/a1h8xxb9w4kvvmq7q30m1ny2pq3zbmin-gitsigns.nvim",
-  "sha256": "0y0il8v0g8kvsyzir4hbkwvzv9wk2iqs1apxlvijk9ccfdk9ya0p",
+  "sha256": "02kssw0lpprf9k3il6gfd00gj9fbjbksipa4f6xqkgfdq5c9l9fr",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -419,7 +424,7 @@ http = buildLuarocksPackage {
   pname = "http";
   version = "0.3-0";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/http-0.3-0.rockspec";
+    url    = "https://luafr.org/luarocks/http-0.3-0.rockspec";
     sha256 = "0fn3irkf5nnmfc83alc40b316hs8l7zdq2xlaiaa65sjd8acfvia";
   }).outPath;
   src = fetchurl {
@@ -442,7 +447,7 @@ inspect = buildLuarocksPackage {
   pname = "inspect";
   version = "3.1.1-0";
   knownRockspec = (fetchurl {
-    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/inspect-3.1.1-0.rockspec";
+    url    = "https://luarocks.org/inspect-3.1.1-0.rockspec";
     sha256 = "00spibq2h4an8v0204vr1hny4vv6za720c37ipsahpjk198ayf1p";
   }).outPath;
   src = fetchurl {
@@ -473,6 +478,7 @@ ldbus = buildLuarocksPackage {
   "date": "2019-08-16T14:26:05+10:00",
   "path": "/nix/store/gg4zldd6kx048d6p65b9cimg3arma8yh-ldbus",
   "sha256": "06wcz4i5b7kphqbry274q3ivnsh331rxiyf7n4qk3zx2kvarq08s",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -499,6 +505,7 @@ ldoc = buildLuarocksPackage {
   "date": "2021-06-24T13:07:51+02:00",
   "path": "/nix/store/pzk1qi4fdviz2pq5bg3q91jmrg8wziqx-LDoc",
   "sha256": "05wd5m5v3gv777kgikj46216slxyf1zdbzl4idara9lcfw3mfyyw",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -527,6 +534,7 @@ lgi = buildLuarocksPackage {
   "date": "2017-10-09T20:55:55+02:00",
   "path": "/nix/store/vh82n8pc8dy5c8nph0vssk99vv7q4qg2-lgi",
   "sha256": "03rbydnj411xpjvwsyvhwy4plm96481d7jax544mvk7apd8sd5jj",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -655,7 +663,7 @@ lpty = buildLuarocksPackage {
   pname = "lpty";
   version = "1.2.2-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/lpty-1.2.2-1.rockspec";
+    url    = "https://luafr.org/luarocks/lpty-1.2.2-1.rockspec";
     sha256 = "04af4mhiqrw3br4qzz7yznw9zy2m50wddwzgvzkvhd99ng71fkzg";
   }).outPath;
   src = fetchurl {
@@ -677,7 +685,7 @@ lrexlib-gnu = buildLuarocksPackage {
   pname = "lrexlib-gnu";
   version = "2.9.1-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/lrexlib-gnu-2.9.1-1.rockspec";
+    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/lrexlib-gnu-2.9.1-1.rockspec";
     sha256 = "1jfjxh26iwsavipkwmscwv52l77qxzvibfmlvpskcpawyii7xcw8";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -686,6 +694,7 @@ lrexlib-gnu = buildLuarocksPackage {
   "date": "2020-08-07T12:10:29+03:00",
   "path": "/nix/store/vnnhcc0r9zhqwshmfzrn0ryai61l6xrd-lrexlib",
   "sha256": "15dsxq0363940rij9za8mc224n9n58i2iqw1z7r1jh3qpkaciw7j",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -715,6 +724,7 @@ lrexlib-pcre = buildLuarocksPackage {
   "date": "2020-08-07T12:10:29+03:00",
   "path": "/nix/store/vnnhcc0r9zhqwshmfzrn0ryai61l6xrd-lrexlib",
   "sha256": "15dsxq0363940rij9za8mc224n9n58i2iqw1z7r1jh3qpkaciw7j",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -736,7 +746,7 @@ lrexlib-posix = buildLuarocksPackage {
   pname = "lrexlib-posix";
   version = "2.9.1-1";
   knownRockspec = (fetchurl {
-    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/lrexlib-posix-2.9.1-1.rockspec";
+    url    = "https://luafr.org/luarocks/lrexlib-posix-2.9.1-1.rockspec";
     sha256 = "1zxrx9yifm9ry4wbjgv86rlvq3ff6qivldvib3ha4767azla0j0r";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -745,6 +755,7 @@ lrexlib-posix = buildLuarocksPackage {
   "date": "2020-08-07T12:10:29+03:00",
   "path": "/nix/store/vnnhcc0r9zhqwshmfzrn0ryai61l6xrd-lrexlib",
   "sha256": "15dsxq0363940rij9za8mc224n9n58i2iqw1z7r1jh3qpkaciw7j",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -774,6 +785,7 @@ lua-cjson = buildLuarocksPackage {
   "date": "2018-04-19T12:03:43-07:00",
   "path": "/nix/store/qdpqx2g0xi1c9fknzxx280mcdq6fi8rw-lua-cjson",
   "sha256": "0i2sjsi6flax1k0bm647yijgmc02jznq9bn88mj71pgii79pfjhw",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -803,6 +815,7 @@ lua-cmsgpack = buildLuarocksPackage {
   "date": "2015-06-03T08:39:04+02:00",
   "path": "/nix/store/ksqvl7hbd5s7nb6hjffyic1shldac4z2-lua-cmsgpack",
   "sha256": "0j0ahc9rprgl6dqxybaxggjam2r5i2wqqsd6764n0d7fdpj9fqm0",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -854,6 +867,7 @@ lua-lsp = buildLuarocksPackage {
   "date": "2020-10-17T15:07:11-04:00",
   "path": "/nix/store/qn9syhm875k1qardhhsp025cm3dbnqvm-lua-lsp",
   "sha256": "17k3jq61jz6j9bz4vc3hmsfx1s26cfgq1acja8fqyixljklmsbqp",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -905,6 +919,7 @@ lua-resty-http = buildLuarocksPackage {
   "date": "2021-04-09T17:11:35+01:00",
   "path": "/nix/store/zzd1xj4r0iy3srs2hgv4mlm6wflmk24x-lua-resty-http",
   "sha256": "1whwn2fwm8c9jda4z1sb5636sfy4pfgjdxw0grcgmf6451xi57nw",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -934,6 +949,7 @@ lua-resty-jwt = buildLuarocksPackage {
   "date": "2021-01-20T16:53:57-05:00",
   "path": "/nix/store/z4a8ffxj2i3gbjp0f8r377cdp88lkzl4-lua-resty-jwt",
   "sha256": "07w8r8gqbby06x493qzislig7a3giw0anqr4ivp3g2ms8v9fnng6",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -954,7 +970,7 @@ lua-resty-openidc = buildLuarocksPackage {
   pname = "lua-resty-openidc";
   version = "1.7.4-1";
   knownRockspec = (fetchurl {
-    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/lua-resty-openidc-1.7.4-1.rockspec";
+    url    = "https://luarocks.org/lua-resty-openidc-1.7.4-1.rockspec";
     sha256 = "12r03pzx1lpaxzy71iqh0kf1zs6gx1k89vpxc5va9r7nr47a56vy";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -963,6 +979,7 @@ lua-resty-openidc = buildLuarocksPackage {
   "date": "2020-11-17T17:42:16+01:00",
   "path": "/nix/store/240kss5xx1br5n3qz6djw21cs1fj4pfg-lua-resty-openidc",
   "sha256": "1gw71av1r0c6v4f1h0bj0l6way2hmipic6wmipnavr17bz7m1q7z",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -981,17 +998,18 @@ lua-resty-openidc = buildLuarocksPackage {
 
 lua-resty-openssl = buildLuarocksPackage {
   pname = "lua-resty-openssl";
-  version = "0.7.4-1";
+  version = "0.7.5-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/lua-resty-openssl-0.7.4-1.rockspec";
+    url    = "https://luafr.org/luarocks/lua-resty-openssl-0.7.5-1.rockspec";
-    sha256 = "1h87nc8rnay2h0hcc9rylkdzrssibjs6whyim53k647wqkm3fslm";
+    sha256 = "13v14in9cgmjgarmy6br9629ns1qlhw7a30c061y6gncjannnv6y";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
   "url": "https://github.com/fffonion/lua-resty-openssl.git",
-  "rev": "5b113a6059e63dbcf7c6fa95a149a9381b904219",
+  "rev": "6a7f4a1649da7e0499b542b73c61e8dbdf91f57e",
-  "date": "2021-08-02T18:09:14+08:00",
+  "date": "2021-09-18T06:15:54+08:00",
-  "path": "/nix/store/qk6fcp5hwqsm4mday34l1mdkx0ba76bx-lua-resty-openssl",
+  "path": "/nix/store/01bninsbgix30zl97lk0p10ycqkc37kx-lua-resty-openssl",
-  "sha256": "1iar6znh0i45zkx03n8vrkwhx732158hmxfmfjgbpv547mh30ly6",
+  "sha256": "1ypji678lna9z3a48lhxs7wrw8d1prln7yfvqfm96lbmfvr5wfxw",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1019,6 +1037,7 @@ lua-resty-session = buildLuarocksPackage {
   "date": "2021-01-04T14:02:41+02:00",
   "path": "/nix/store/jqc8arr46mx1xbmrsw503zza1kmz7mcv-lua-resty-session",
   "sha256": "09q8xbxkr431i2k21vdyx740rv325v0zmnx0qa3q9x15kcfsd2fm",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1068,6 +1087,7 @@ lua-toml = buildLuarocksPackage {
   "date": "2017-12-08T16:30:50-08:00",
   "path": "/nix/store/cnpflpyj441c65jhb68hjr2bcvnj9han-lua-toml",
   "sha256": "0lklhgs4n7gbgva5frs39240da1y4nwlx6yxaj3ix6r5lp9sh07b",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1097,6 +1117,7 @@ lua-yajl = buildLuarocksPackage {
   "date": "2020-11-12T06:22:23-08:00",
   "path": "/nix/store/9acgxpqk52kwn03m5xasn4f6mmsby2r9-lua-yajl",
   "sha256": "1frry90y7vqnw1rd1dfnksilynh0n24gfhkmjd6wwba73prrg0pf",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1118,7 +1139,7 @@ lua-zlib = buildLuarocksPackage {
   pname = "lua-zlib";
   version = "1.2-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/lua-zlib-1.2-1.rockspec";
+    url    = "https://luafr.org/luarocks/lua-zlib-1.2-1.rockspec";
     sha256 = "18rpbg9b4vsnh3svapiqrvwwshw1abb5l5fd7441byx1nm3fjq9w";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -1127,6 +1148,7 @@ lua-zlib = buildLuarocksPackage {
   "date": "2017-10-07T08:26:37-07:00",
   "path": "/nix/store/6hjfczd3xkilkdxidgqzdrwmaiwnlf05-lua-zlib",
   "sha256": "1cv12s5c5lihmf3hb0rz05qf13yihy1bjpb7448v8mkiss6y1s5c",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1173,6 +1195,7 @@ luabitop = buildLuarocksPackage {
   "date": "2021-08-30T10:14:03+02:00",
   "path": "/nix/store/sdnza0zpmlkz9jppnysasbvqy29f4zia-luabitop",
   "sha256": "1b57f99lrjbwsi4m23cq5kpj0dbpxh3xwr0mxs2rzykr2ijpgwrw",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1202,6 +1225,7 @@ luacheck = buildLuarocksPackage {
   "date": "2020-08-20T19:21:52-03:00",
   "path": "/nix/store/8r4x8snxp0kjabn9bsxwh62pfczd8wma-luacheck",
   "sha256": "08jsqibksdvpl6mvf8d6rlh5pii78hqm3fkhbkgzrs6k8kk5a7lf",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1222,7 +1246,7 @@ luacov = buildLuarocksPackage {
   pname = "luacov";
   version = "0.15.0-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/luacov-0.15.0-1.rockspec";
+    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/luacov-0.15.0-1.rockspec";
     sha256 = "18byfl23c73pazi60hsx0vd74hqq80mzixab76j36cyn8k4ni9db";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -1231,6 +1255,7 @@ luacov = buildLuarocksPackage {
   "date": "2021-02-15T18:47:58-03:00",
   "path": "/nix/store/9vm38il9knzx2m66m250qj1fzdfzqg0y-luacov",
   "sha256": "08550nna6qcb5jn6ds1hjm6010y8973wx4qbf9vrvrcn1k2yr6ki",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1260,6 +1285,7 @@ luadbi = buildLuarocksPackage {
   "date": "2019-01-14T09:39:17+00:00",
   "path": "/nix/store/a3qgawila4r4jc2lpdc4mwyzd1gvzazd-luadbi",
   "sha256": "167ivwmczhp98bxzpz3wdxcfj6vi0a10gpi7rdfjs2rbfwkzqvjh",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1280,7 +1306,7 @@ luadbi-mysql = buildLuarocksPackage {
   pname = "luadbi-mysql";
   version = "0.7.2-1";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/luadbi-mysql-0.7.2-1.rockspec";
+    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/luadbi-mysql-0.7.2-1.rockspec";
     sha256 = "0gnyqnvcfif06rzzrdw6w6hchp4jrjiwm0rmfx2r8ljchj2bvml5";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -1289,6 +1315,7 @@ luadbi-mysql = buildLuarocksPackage {
   "date": "2019-01-14T09:39:17+00:00",
   "path": "/nix/store/a3qgawila4r4jc2lpdc4mwyzd1gvzazd-luadbi",
   "sha256": "167ivwmczhp98bxzpz3wdxcfj6vi0a10gpi7rdfjs2rbfwkzqvjh",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1318,6 +1345,7 @@ luadbi-postgresql = buildLuarocksPackage {
   "date": "2019-01-14T09:39:17+00:00",
   "path": "/nix/store/a3qgawila4r4jc2lpdc4mwyzd1gvzazd-luadbi",
   "sha256": "167ivwmczhp98bxzpz3wdxcfj6vi0a10gpi7rdfjs2rbfwkzqvjh",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1347,6 +1375,7 @@ luadbi-sqlite3 = buildLuarocksPackage {
   "date": "2019-01-14T09:39:17+00:00",
   "path": "/nix/store/a3qgawila4r4jc2lpdc4mwyzd1gvzazd-luadbi",
   "sha256": "167ivwmczhp98bxzpz3wdxcfj6vi0a10gpi7rdfjs2rbfwkzqvjh",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1367,7 +1396,7 @@ luaepnf = buildLuarocksPackage {
   pname = "luaepnf";
   version = "0.3-2";
   knownRockspec = (fetchurl {
-    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/luaepnf-0.3-2.rockspec";
+    url    = "https://luafr.org/luarocks/luaepnf-0.3-2.rockspec";
     sha256 = "0kqmnj11wmfpc9mz04zzq8ab4mnbkrhcgc525wrq6pgl3p5li8aa";
   }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
@@ -1376,6 +1405,7 @@ luaepnf = buildLuarocksPackage {
   "date": "2015-01-15T16:54:10+01:00",
   "path": "/nix/store/n7gb0z26sl7dzdyy3bx1y3cz3npsna7d-lua-luaepnf",
   "sha256": "1lvsi3fklhvz671jgg0iqn0xbkzn9qjcbf2ks41xxjz3lapjr6c9",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1450,6 +1480,7 @@ luaffi = buildLuarocksPackage {
   "date": "2021-03-01T11:46:30-05:00",
   "path": "/nix/store/6dwfn64p3clcsxkq41b307q8izi0fvji-luaffifb",
   "sha256": "0nj76fw3yi57vfn35yvbdmpdbg9gmn5j1gw84ajs9w1j86sc0661",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1479,6 +1510,7 @@ luafilesystem = buildLuarocksPackage {
   "date": "2017-09-15T20:07:33-03:00",
   "path": "/nix/store/20xm4942kvnb8kypg76jl7zrym5cz03c-luafilesystem",
   "sha256": "0zmprgkm9zawdf9wnw0v3w6ibaj442wlc6alp39hmw610fl4vghi",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1509,6 +1541,7 @@ lualogging = buildLuarocksPackage {
   "date": "2021-08-12T19:29:39+02:00",
   "path": "/nix/store/q1v28n04hh3r7aw37cxakzksfa3kw5qa-lualogging",
   "sha256": "0nj0ik91lgl9rwgizdkn7vy9brddsz1kxfn70c01x861vaxi63iz",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1603,6 +1636,7 @@ luasec = buildLuarocksPackage {
   "date": "2021-08-14T10:28:09-03:00",
   "path": "/nix/store/jk2npg54asnmj5fnpldn8dxym9gx8x4g-luasec",
   "sha256": "14hx72qw3gjgz12v5bwpz3irgbf69f8584z8y7lglccbyydp4jla",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1655,6 +1689,7 @@ luasql-sqlite3 = buildLuarocksPackage {
   "date": "2021-08-27T15:17:22-03:00",
   "path": "/nix/store/2374agarn72cnlnk2vripfy1zz2y50la-luasql",
   "sha256": "13xs1g67d2p69x4wzxk1h97xh25388h0kkh9bjgw3l1yss9zlxhx",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1720,7 +1755,7 @@ luautf8 = buildLuarocksPackage {
   pname = "luautf8";
   version = "0.1.3-1";
   knownRockspec = (fetchurl {
-    url    = "https://raw.githubusercontent.com/rocks-moonscript-org/moonrocks-mirror/master/luautf8-0.1.3-1.rockspec";
+    url    = "https://luarocks.org/luautf8-0.1.3-1.rockspec";
     sha256 = "16i9wfgd0f299g1afgjp0hhczlrk5g8i0kq3ka0f8bwj3mp2wmcp";
   }).outPath;
   src = fetchurl {
@@ -1752,6 +1787,7 @@ luazip = buildLuarocksPackage {
   "date": "2017-09-05T14:02:52+03:00",
   "path": "/nix/store/idllj442c0iwnx1cpkrifx2afb7vh821-luazip",
   "sha256": "1jlqzqlds3aa3hnp737fm2awcx0hzmwyd87klv0cv13ny5v9f2x4",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1792,14 +1828,14 @@ luuid = buildLuarocksPackage {
 
 luv = buildLuarocksPackage {
   pname = "luv";
-  version = "1.30.0-0";
+  version = "1.42.0-0";
   knownRockspec = (fetchurl {
-    url    = "https://luarocks.org/luv-1.30.0-0.rockspec";
+    url    = "https://luarocks.org/luv-1.42.0-0.rockspec";
-    sha256 = "05j231z6vpfjbxxmsizbigrsr80bk2dg48fcz12isj668lhia32h";
+    sha256 = "0pr2gjjnm60w0csb0dacrjalan7ifsfw4lki4ykxx1f4m5snam09";
   }).outPath;
   src = fetchurl {
-    url    = "https://github.com/luvit/luv/releases/download/1.30.0-0/luv-1.30.0-0.tar.gz";
+    url    = "https://github.com/luvit/luv/releases/download/1.42.0-0/luv-1.42.0-0.tar.gz";
-    sha256 = "1vxmxgdjk2bdnm8d9n3z5lfg6x34cx97j5nh8camm6ps5c0mmisw";
+    sha256 = "0dkzjkkm0h516ag6sfz5iji761y9slrcfw325f39zkda1sfql8mm";
   };
 
   disabled = (luaOlder "5.1");
@@ -1848,6 +1884,7 @@ markdown = buildLuarocksPackage {
   "date": "2015-09-27T17:49:28+03:00",
   "path": "/nix/store/akl80hh077hm20bdqj1lksy0fn2285b5-markdown",
   "sha256": "019bk2qprszqncnm8zy6ns6709iq1nwkf7i86nr38f035j4lc11y",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1899,6 +1936,7 @@ moonscript = buildLuarocksPackage {
   "date": "2021-03-18T11:51:52-07:00",
   "path": "/nix/store/xijbk0bgjpxjgmvscbqnghj4r3zdzgxl-moonscript",
   "sha256": "14xx6pij0djblfv3g2hi0xlljh7h0yrbb03f4x90q5j66v693gx7",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -1957,18 +1995,16 @@ nvim-client = buildLuarocksPackage {
 
 penlight = buildLuarocksPackage {
   pname = "penlight";
-  version = "1.11.0-1";
+  version = "dev-1";
-  knownRockspec = (fetchurl {
+
-    url    = "https://luarocks.org/penlight-1.11.0-1.rockspec";
-    sha256 = "1sjhnywvamyi9fadhra5pw2an1rhy2hk2byfxmr3n5wi0xrqv004";
-  }).outPath;
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
   "url": "https://github.com/lunarmodules/penlight.git",
-  "rev": "e3712f00fae09a166dd62540b677600165d5bcd7",
+  "rev": "0653cdb05591454a9804a7fee8c873b8f06b0b8f",
-  "date": "2021-08-18T21:37:47+02:00",
+  "date": "2021-08-31T23:42:29+02:00",
-  "path": "/nix/store/i70ndw8qhvcm828ifb3vyj08y22xp0ka-penlight",
+  "path": "/nix/store/zf3k6z36bxsrbxkkmsa4w6m7vxvlpfgn-penlight",
-  "sha256": "19n9xqkb4hlak0k7hamk4ixwjvyxslsnyh1zjazdzrl8n736xhkl",
+  "sha256": "0l1819dyr9hzmimnjjg99fad6k3ksmlm77hgvdybgz8558lj4g1i",
-  "fetchSubmodules": false,
+  "fetchLFS": false,
+  "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
 }
@@ -1976,7 +2012,7 @@ penlight = buildLuarocksPackage {
 
   disabled = (luaOlder "5.1");
   propagatedBuildInputs = [ lua luafilesystem ];
-  checkInputs = [ busted ];
+  checkInputs = [ busted busted ];
   doCheck = false;
 
   meta = {
@@ -1993,10 +2029,11 @@ plenary-nvim = buildLuarocksPackage {
 
   src = fetchgit ( removeAttrs (builtins.fromJSON ''{
   "url": "https://github.com/nvim-lua/plenary.nvim",
-  "rev": "15c3cb9e6311dc1a875eacb9fc8df69ca48d7402",
+  "rev": "8c6cc07a68b65eb707be44598f0084647d495978",
-  "date": "2021-08-19T19:04:12+02:00",
+  "date": "2021-09-26T16:13:25+02:00",
-  "path": "/nix/store/fjj6gs1yc9gw3qh3xabf7mra4dlyac5a-plenary.nvim",
+  "path": "/nix/store/j8hmr48blm4brq8rqv7b9m08vmalg8sp-plenary.nvim",
-  "sha256": "0gdysws82vdcyfsfpkpg9wqw223vg6hh74pf821wxh8p6qg3r26m",
+  "sha256": "05h5n7jj33y9vs6gc8hqlfd628j6i33s3c8fmfl6ahxwfygx2wpd",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -2023,6 +2060,7 @@ rapidjson = buildLuarocksPackage {
   "date": "2021-04-09T19:59:20+08:00",
   "path": "/nix/store/65l71ph27pmipgrq8j4whg6n8h2avvs4-lua-rapidjson",
   "sha256": "1a6srvximxlh6gjkaj5y86d1kf06pc4gby2r6wpdw2pdac8k7xyb",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -2090,6 +2128,7 @@ std-_debug = buildLuarocksPackage {
   "date": "2020-04-15T16:34:01-07:00",
   "path": "/nix/store/rgbn0nn7glm7s52d90ds87j10bx20nij-_debug",
   "sha256": "0p6jz6syh2r8qfk08jf2hp4p902rkamjzpzl8xhkpzf8rdzs937w",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -2116,6 +2155,7 @@ std-normalize = buildLuarocksPackage {
   "date": "2020-04-15T17:16:16-07:00",
   "path": "/nix/store/jr4agcn13fk56b8105p6yr9gn767fkds-normalize",
   "sha256": "0jiykdjxc4b5my12fnzrw3bxracjgxc265xrn8kfx95350kvbzl1",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false
@@ -2165,6 +2205,7 @@ vstruct = buildLuarocksPackage {
   "date": "2020-05-06T23:13:06-04:00",
   "path": "/nix/store/a4i9k5hx9xiz38bij4hb505dg088jkss-vstruct",
   "sha256": "0sl9v874mckhh6jbxsan48s5xajzx193k4qlphw69sdbf8kr3p57",
+  "fetchLFS": false,
   "fetchSubmodules": true,
   "deepClone": false,
   "leaveDotGit": false

pkgs/development/lua-modules/lib.nix

@@ -60,4 +60,72 @@ rec {
         requiredLuaModules = requiredLuaModules drv.propagatedBuildInputs;
       };
     });
+
+  /* generate luarocks config
+
+  generateLuarocksConfig {
+    externalDeps = [ { name = "CRYPTO"; dep = pkgs.openssl; } ];
+    rocksSubdir = "subdir";
+  };
+  */
+  generateLuarocksConfig = {
+    externalDeps
+    , requiredLuaRocks
+    , extraVariables ? {}
+    , rocksSubdir
+    }: let
+      rocksTrees = lib.imap0
+        (i: dep: "{ name = [[dep-${toString i}]], root = '${dep}', rocks_dir = '${dep}/${dep.rocksSubdir}' }")
+        requiredLuaRocks;
+
+      # Explicitly point luarocks to the relevant locations for multiple-output
+      # derivations that are external dependencies, to work around an issue it has
+      # (https://github.com/luarocks/luarocks/issues/766)
+      depVariables = lib.concatMap ({name, dep}: [
+        "${name}_INCDIR='${lib.getDev dep}/include';"
+        "${name}_LIBDIR='${lib.getLib dep}/lib';"
+        "${name}_BINDIR='${lib.getBin dep}/bin';"
+      ]) externalDeps';
+
+      # example externalDeps': [ { name = "CRYPTO"; dep = pkgs.openssl; } ]
+      externalDeps' = lib.filter (dep: !lib.isDerivation dep) externalDeps;
+
+      externalDepsDirs = map
+        (x: "'${builtins.toString x}'")
+        (lib.filter (lib.isDerivation) externalDeps);
+
+      extraVariablesStr = lib.concatStringsSep "\n "
+        (lib.mapAttrsToList (k: v: "${k}='${v}';") extraVariables);
+  in ''
+    local_cache = ""
+    -- To prevent collisions when creating environments, we install the rock
+    -- files into per-package subdirectories
+    rocks_subdir = '${rocksSubdir}'
+    -- Then we need to tell luarocks where to find the rock files per
+    -- dependency
+    rocks_trees = {
+      ${lib.concatStringsSep "\n, " rocksTrees}
+    }
+  '' + lib.optionalString lua.pkgs.isLuaJIT ''
+    -- Luajit provides some additional functionality built-in; this exposes
+    -- that to luarock's dependency system
+    rocks_provided = {
+      jit='${lua.luaversion}-1';
+      ffi='${lua.luaversion}-1';
+      luaffi='${lua.luaversion}-1';
+      bit='${lua.luaversion}-1';
+    }
+  '' + ''
+    -- For single-output external dependencies
+    external_deps_dirs = {
+      ${lib.concatStringsSep "\n, " externalDepsDirs}
+    }
+    variables = {
+      -- Some needed machinery to handle multiple-output external dependencies,
+      -- as per https://github.com/luarocks/luarocks/issues/766
+      ${lib.optionalString (lib.length depVariables > 0) ''
+        ${lib.concatStringsSep "\n  " depVariables}''}
+      ${extraVariablesStr}
+    }
+  '';
 }

pkgs/development/lua-modules/overrides.nix

@@ -300,7 +300,7 @@ with super;
         preBuild = self.luv.preBuild + ''
           sed -i 's,\(option(BUILD_MODULE.*\)ON,\1OFF,' CMakeLists.txt
           sed -i 's,\(option(BUILD_SHARED_LIBS.*\)OFF,\1ON,' CMakeLists.txt
-          sed -i 's,${"\${INSTALL_INC_DIR}"},${placeholder "out"}/include/luv,' CMakeLists.txt
+          sed -i 's,${"\${.*INSTALL_INC_DIR}"},${placeholder "out"}/include/luv,' CMakeLists.txt
         '';
 
         nativeBuildInputs = [ pkgs.fixDarwinDylibNames ];

pkgs/development/python-modules/cartopy/default.nix

@@ -8,14 +8,21 @@
 
 buildPythonPackage rec {
   pname = "cartopy";
-  version = "0.19.0.post1";
+  version = "0.20.0";
 
   src = fetchPypi {
     inherit version;
     pname = "Cartopy";
-    sha256 = "0xnm8z3as3hriivdfd26s6vn5b63gb46x6vxw6gh1mwfm5rlg2sb";
+    sha256 = "eae58aff26806e63cf115b2bce9477cedc4aa9f578c5e477b2c25cfa404f2b7a";
   };
 
+  postPatch = ''
+    # https://github.com/SciTools/cartopy/issues/1880
+    substituteInPlace lib/cartopy/tests/test_crs.py \
+      --replace "test_osgb(" "dont_test_osgb(" \
+      --replace "test_epsg(" "dont_test_epsg("
+  '';
+
   buildInputs = [
     geos proj
   ];

pkgs/development/python-modules/geopandas/default.nix

@@ -1,4 +1,4 @@
-{ lib, stdenv, buildPythonPackage, fetchFromGitHub, pythonOlder
+{ lib, stdenv, buildPythonPackage, fetchFromGitHub, fetchpatch, pythonOlder
 , pandas, shapely, fiona, pyproj
 , pytestCheckHook, Rtree }:
 
@@ -14,6 +14,19 @@ buildPythonPackage rec {
     sha256 = "sha256-58X562OkRzZ4UTNMTwXW4U5czoa5tbSMBCcE90DqbaE=";
   };
 
+  patches = [
+    (fetchpatch {
+      name = "skip-pandas-master-fillna-test.patch";
+      url = "https://github.com/geopandas/geopandas/pull/1878.patch";
+      sha256 = "1yw3i4dbhaq7f02n329b9y2cqxbwlz9db81mhgrfc7af3whwysdb";
+    })
+    (fetchpatch {
+      name = "fix-proj4strings-test.patch";
+      url = "https://github.com/geopandas/geopandas/pull/1958.patch";
+      sha256 = "0kzmpq5ry87yvhqr6gnh9p2606b06d3ynzjvw0hpp9fncczpc2yn";
+    })
+  ];
+
   propagatedBuildInputs = [
     pandas
     shapely

pkgs/development/python-modules/mypy-boto3-s3/default.nix

@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "mypy-boto3-s3";
-  version = "1.18.47";
+  version = "1.18.48";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0687354a1970a157f293ff57f8b38379497b606643633912cc28f76e0333b301";
+    sha256 = "a14917021aac10432887b2acb634be8d66401ffb87cdb0fc271aff867929538c";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/pyproj/001.proj.patch

@@ -1,19 +1,21 @@
-diff -Nur a/pyproj/datadir.py b/pyproj/datadir.py
+diff --git a/pyproj/datadir.py b/pyproj/datadir.py
---- a/pyproj/datadir.py	2021-04-10 18:26:52.829018483 +0100
+index 9ca1d25..4198490 100644
-+++ b/pyproj/datadir.py	2021-04-10 18:44:59.155190614 +0100
+--- a/pyproj/datadir.py
-@@ -70,7 +70,7 @@
++++ b/pyproj/datadir.py
+@@ -70,7 +70,7 @@ def get_data_dir() -> str:
+     global _VALIDATED_PROJ_DATA
      if _VALIDATED_PROJ_DATA is not None:
          return _VALIDATED_PROJ_DATA
-     global _USER_PROJ_DATA
 -    internal_datadir = Path(__file__).absolute().parent / "proj_dir" / "share" / "proj"
 +    internal_datadir = Path("@proj@/share/proj")
      proj_lib_dirs = os.environ.get("PROJ_LIB", "")
      prefix_datadir = Path(sys.prefix, "share", "proj")
  
-diff -Nur a/setup.py b/setup.py
+diff --git a/setup.py b/setup.py
---- a/setup.py	2021-04-10 18:26:52.817018512 +0100
+index 6bb0c6c..b3d0321 100644
-+++ b/setup.py	2021-04-10 18:46:01.652324424 +0100
+--- a/setup.py
-@@ -11,7 +11,7 @@
++++ b/setup.py
+@@ -12,7 +12,7 @@ from setuptools import Extension, setup
  PROJ_MIN_VERSION = parse_version("7.2.0")
  CURRENT_FILE_PATH = Path(__file__).absolute().parent
  BASE_INTERNAL_PROJ_DIR = Path("proj_dir")
@@ -22,7 +24,7 @@ diff -Nur a/setup.py b/setup.py
  
  
  def get_proj_version(proj_dir: Path) -> str:
-@@ -150,7 +150,7 @@
+@@ -155,7 +155,7 @@ def get_extension_modules():
      # By default we'll try to get options PROJ_DIR or the local version of proj
      proj_dir = get_proj_dir()
      library_dirs = get_proj_libdirs(proj_dir)
@@ -31,21 +33,11 @@ diff -Nur a/setup.py b/setup.py
  
      proj_version = get_proj_version(proj_dir)
      check_proj_version(proj_version)
-diff -Nur a/test/conftest.py b/test/conftest.py
+diff --git a/test/test_cli.py b/test/test_cli.py
---- a/test/conftest.py	2021-04-10 18:26:52.831018478 +0100
+index 7a696de..1b9b777 100644
-+++ b/test/conftest.py	2021-04-10 18:37:01.605682432 +0100
+--- a/test/test_cli.py
-@@ -2,6 +2,7 @@
++++ b/test/test_cli.py
- from contextlib import contextmanager
+@@ -14,7 +14,7 @@ from pyproj.sync import _load_grid_geojson
- from distutils.version import LooseVersion
- from pathlib import Path
-+import stat
- 
- import pyproj
- from pyproj.datadir import get_data_dir, get_user_data_dir, set_data_dir
-diff -Nur a/test/test_cli.py b/test/test_cli.py
---- a/test/test_cli.py	2021-04-10 18:26:52.831018478 +0100
-+++ b/test/test_cli.py	2021-04-10 22:17:04.665088162 +0100
-@@ -14,7 +14,7 @@
  from test.conftest import grids_available, proj_env, tmp_chdir
  
  PYPROJ_CLI_ENDPONTS = pytest.mark.parametrize(

pkgs/development/python-modules/pyproj/default.nix

@@ -17,14 +17,14 @@
 
 buildPythonPackage rec {
   pname = "pyproj";
-  version = "3.1.0";
+  version = "3.2.1";
   disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "pyproj4";
     repo = "pyproj";
     rev = version;
-    sha256 = "sha256-UN8cJk5Lgd+d2tKmFuF6QvKr36w1435RKovzGfMXi1E=";
+    sha256 = "sha256-r343TvXpSr+EMAbvzSUpsfipwP8TFmitOfT0gjgoO00=";
   };
 
   # force pyproj to use ${proj}

pkgs/development/tools/build-managers/shards/default.nix

@@ -1,7 +1,6 @@
 { lib
 , fetchFromGitHub
-, crystal_0_34
+, crystal_1_0
-, crystal_0_36
 }:
 let
   generic =
@@ -36,18 +35,12 @@ let
 
 in
 rec {
-  # needed for anything that requires the old v1 shards format
-  shards_0_11 = generic {
-    version = "0.11.1";
-    sha256 = "05qnhc23xbmicdl4fwyxfpcvd8jq4inzh6v7jsjjw4n76vzb1f71";
-    crystal = crystal_0_34;
-  };
 
-  shards_0_14 = generic {
+  shards_0_15 = generic {
-    version = "0.14.1";
+    version = "0.15.0";
     sha256 = "sha256-/C6whh5RbTBkFWqpn0GqyVe0opbrklm8xPv5MIG99VU=";
-    crystal = crystal_0_36;
+    crystal = crystal_1_0;
   };
 
-  shards = shards_0_14;
+  shards = shards_0_15;
 }

pkgs/misc/emulators/wine/base.nix

@@ -106,7 +106,7 @@ stdenv.mkDerivation ((lib.optionalAttrs (buildScript != null) {
 
   postInstall = let
     links = prefix: pkg: "ln -s ${pkg} $out/${prefix}/${pkg.name}";
-  in ''
+  in lib.optionalString supportFlags.embedInstallers ''
     mkdir -p $out/share/wine/gecko $out/share/wine/mono/
     ${lib.strings.concatStringsSep "\n"
           ((map (links "share/wine/gecko") geckos)

pkgs/misc/emulators/wine/default.nix

@@ -45,6 +45,7 @@
   faudioSupport ? false,
   vkd3dSupport ? false,
   mingwSupport ? wineRelease != "stable",
+  embedInstallers ? false # The Mono and Gecko MSI installers
 }:
 
 let wine-build = build: release:
@@ -57,7 +58,7 @@ let wine-build = build: release:
                   gsmSupport gphoto2Support ldapSupport fontconfigSupport alsaSupport
                   pulseaudioSupport xineramaSupport gtkSupport openclSupport xmlSupport tlsSupport
                   openglSupport gstreamerSupport udevSupport vulkanSupport sdlSupport faudioSupport
-                  vkd3dSupport mingwSupport;
+                  vkd3dSupport mingwSupport embedInstallers;
         };
       });
 

pkgs/os-specific/linux/kernel/hardened/patches.json

@@ -1,21 +1,21 @@
 {
     "4.14": {
         "extra": "-hardened1",
-        "name": "linux-hardened-4.14.247-hardened1.patch",
+        "name": "linux-hardened-4.14.248-hardened1.patch",
-        "sha256": "0k3ii26ry0cszxs5n4ljll61p1kdi3dn5cvzjr8zb78bfrk7lbra",
+        "sha256": "1lwqlpd21f8rwqfyz61083w0lg2bjzdjf7rzrqxsw1jz0l879035",
-        "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.247-hardened1/linux-hardened-4.14.247-hardened1.patch"
+        "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.248-hardened1/linux-hardened-4.14.248-hardened1.patch"
     },
     "4.19": {
         "extra": "-hardened1",
-        "name": "linux-hardened-4.19.207-hardened1.patch",
+        "name": "linux-hardened-4.19.208-hardened1.patch",
-        "sha256": "1yn6c8axvnmck1ignw4k3pi458x0m2qm7g5vjwf2rw8cnzskrs48",
+        "sha256": "0bg45n1kgd628gwjkp1vxslxyci6589ygy9mmmhpl7kj3y7370ck",
-        "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.207-hardened1/linux-hardened-4.19.207-hardened1.patch"
+        "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.208-hardened1/linux-hardened-4.19.208-hardened1.patch"
     },
     "5.10": {
         "extra": "-hardened1",
-        "name": "linux-hardened-5.10.68-hardened1.patch",
+        "name": "linux-hardened-5.10.69-hardened1.patch",
-        "sha256": "11cn72lzgc6vcbx4xbdvfxrfwy3hfn7sqjxf5laqw9jdhacnlhvn",
+        "sha256": "11frhnprvxnqxm8yn1kay2jv2i473i9glnvsjnqz6kj8f0q2gl4v",
-        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.68-hardened1/linux-hardened-5.10.68-hardened1.patch"
+        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.69-hardened1/linux-hardened-5.10.69-hardened1.patch"
     },
     "5.13": {
         "extra": "-hardened1",
@@ -25,14 +25,14 @@
     },
     "5.14": {
         "extra": "-hardened1",
-        "name": "linux-hardened-5.14.7-hardened1.patch",
+        "name": "linux-hardened-5.14.8-hardened1.patch",
-        "sha256": "18i0qxhzga2vg0kal5ifsks0vra6gj21q6whcjry9sglxandn2vg",
+        "sha256": "1kg02ixyd2dbk97iz28g26k1nnxi96s0bcyr90wc7diylhf7kz4a",
-        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.14.7-hardened1/linux-hardened-5.14.7-hardened1.patch"
+        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.14.8-hardened1/linux-hardened-5.14.8-hardened1.patch"
     },
     "5.4": {
         "extra": "-hardened1",
-        "name": "linux-hardened-5.4.148-hardened1.patch",
+        "name": "linux-hardened-5.4.149-hardened1.patch",
-        "sha256": "0kb2d9csm8bbjark2ii0n1jpfcr6avdr8r5g97awzbg9jxkfs0j4",
+        "sha256": "1v21dz66ngsdsdcld23rgmidz955x74al5nsxnvwasc5gh18ahh9",
-        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.148-hardened1/linux-hardened-5.4.148-hardened1.patch"
+        "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.149-hardened1/linux-hardened-5.4.149-hardened1.patch"
     }
 }

pkgs/top-level/all-packages.nix

@@ -11123,9 +11123,6 @@ with pkgs;
   inherit (callPackages ../development/compilers/crystal {
     llvmPackages = llvmPackages_10;
   })
-    crystal_0_33
-    crystal_0_34
-    crystal_0_35
     crystal_0_36
     crystal_1_0
     crystal;
@@ -14726,8 +14723,7 @@ with pkgs;
   shallot = callPackage ../tools/misc/shallot { };
 
   inherit (callPackage ../development/tools/build-managers/shards { })
-    shards_0_11
+    shards_0_15
-    shards_0_14
     shards;
 
   shellcheck = callPackage ../development/tools/shellcheck {};
@@ -18552,6 +18548,8 @@ with pkgs;
 
   proj = callPackage ../development/libraries/proj { };
 
+  proj_7 = callPackage ../development/libraries/proj/7.nix { };
+
   proj-datumgrid = callPackage ../development/libraries/proj-datumgrid { };
 
   proselint = callPackage ../tools/text/proselint {
@@ -26971,7 +26969,14 @@ with pkgs;
 
   qimgv = libsForQt5.callPackage ../applications/graphics/qimgv { };
 
-  qlandkartegt = libsForQt514.callPackage ../applications/misc/qlandkartegt {};
+  qlandkartegt = libsForQt514.callPackage ../applications/misc/qlandkartegt {
+    gdal = gdal.override {
+      libgeotiff = libgeotiff.override { proj = proj_7; };
+      libspatialite = libspatialite.override { proj = proj_7; };
+      proj = proj_7;
+    };
+    proj = proj_7;
+  };
 
   garmindev = callPackage ../applications/misc/qlandkartegt/garmindev.nix {};
 
@@ -31135,10 +31140,7 @@ with pkgs;
 
   gildas = callPackage ../applications/science/astronomy/gildas { };
 
-  gplates = callPackage ../applications/science/misc/gplates {
+  gplates = libsForQt5.callPackage ../applications/science/misc/gplates { };
-    boost = boost160;
-    cgal = cgal.override { boost = boost160; };
-  };
 
   gravit = callPackage ../applications/science/astronomy/gravit { };
 

pkgs/top-level/lua-packages.nix

@@ -12,18 +12,12 @@
 , fetchFromGitHub, which, writeText
 , pkgs
 , lib
-}:
+}@args:
 
 let
   packages = ( self:
 
 let
-
-  # a function of lua_path / lua_cpath
-  lua-setup-hook = callPackage ../development/interpreters/lua-5/setup-hook.nix {
-    inherit lib;
-  };
-
   callPackage = pkgs.newScope self;
 
   buildLuaApplication = args: buildLuarocksPackage ({namePrefix="";} // args );
@@ -52,11 +46,13 @@ in
   # helper functions for dealing with LUA_PATH and LUA_CPATH
   lib = luaLib;
 
-  getLuaPath = drv: luaLib.getPath drv (luaLib.luaPathList lua.luaversion) ;
+  getLuaPath = drv: getPath drv (luaLib.luaPathList lua.luaversion) ;
-  getLuaCPath = drv: luaLib.getPath drv (luaLib.luaCPathList lua.luaversion) ;
+  getLuaCPath = drv: getPath drv (luaLib.luaCPathList lua.luaversion) ;
 
+  inherit (callPackage ../development/interpreters/lua-5/hooks { inherit (args) lib;})
+    lua-setup-hook;
 
-  inherit lua lua-setup-hook callPackage;
+  inherit lua callPackage;
   inherit buildLuaPackage buildLuarocksPackage buildLuaApplication;
   inherit (luaLib) luaOlder luaAtLeast isLua51 isLua52 isLua53 isLuaJIT
     requiredLuaModules toLuaModule hasLuaModule;

pkgs/top-level/wine-packages.nix

@@ -47,6 +47,7 @@ rec {
     ldapSupport = true;
     faudioSupport = true;
     vkd3dSupport = true;
+    embedInstallers = true;
   };
 
   stable = base.override { wineRelease = "stable"; };