diff --git a/pkgs/applications/science/misc/gephi/default.nix b/pkgs/applications/science/misc/gephi/default.nix
index bb17fcc9c283..a5bf1a2da2b6 100644
--- a/pkgs/applications/science/misc/gephi/default.nix
+++ b/pkgs/applications/science/misc/gephi/default.nix
@@ -1,20 +1,20 @@
-{ lib, stdenv, fetchFromGitHub, jdk, maven, javaPackages }:
+{ lib, stdenv, fetchFromGitHub, jdk11, maven, javaPackages }:
 
 let
-  version = "0.9.6";
+  version = "0.10.1";
 
   src = fetchFromGitHub {
     owner = "gephi";
     repo = "gephi";
     rev = "v${version}";
-    sha256 = "sha256-3+tOwcE7TUeexJCugFsx9SgsKeb7ApNqbMEIi9QaKPE=";
+    hash = "sha256-ZNSEaiD32zFfF2ISKa1CmcT9Nq6r5i2rNHooQAcVbn4=";
   };
 
   # perform fake build to make a fixed-output derivation out of the files downloaded from maven central (120MB)
   deps = stdenv.mkDerivation {
     name = "gephi-${version}-deps";
     inherit src;
-    buildInputs = [ jdk maven ];
+    buildInputs = [ jdk11 maven ];
     buildPhase = ''
       while mvn package -Dmaven.repo.local=$out/.m2 -Dmaven.wagon.rto=5000; [ $? = 1 ]; do
         echo "timeout, restart maven to continue downloading"
@@ -24,7 +24,7 @@ let
     installPhase = ''find $out/.m2 -type f -regex '.+\(\.lastUpdated\|resolver-status\.properties\|_remote\.repositories\)' -delete'';
     outputHashAlgo = "sha256";
     outputHashMode = "recursive";
-    outputHash = "sha256-kIPsZN0alRAgiMbckQnMWKOKtCZ37D/6MgT17VYcr+s=";
+    outputHash = "sha256-OdW4M5nGEkYkmHpRLM4cBQtk4SJII2uqM8TXb6y4eXk=";
   };
 in
 stdenv.mkDerivation {
@@ -33,7 +33,7 @@ stdenv.mkDerivation {
 
   inherit src;
 
-  buildInputs = [ jdk maven ];
+  buildInputs = [ jdk11 maven ];
 
   buildPhase = ''
     # 'maven.repo.local' must be writable so copy it out of nix store
@@ -49,10 +49,10 @@ stdenv.mkDerivation {
 
     # use self-compiled JOGL to avoid patchelf'ing .so inside jars
     rm $out/gephi/modules/ext/org.gephi.visualization/org-jogamp-{jogl,gluegen}/*.jar
-    cp ${javaPackages.jogl_2_3_2}/share/java/jogl*.jar $out/gephi/modules/ext/org.gephi.visualization/org-jogamp-jogl/
-    cp ${javaPackages.jogl_2_3_2}/share/java/glue*.jar $out/gephi/modules/ext/org.gephi.visualization/org-jogamp-gluegen/
+    cp ${javaPackages.jogl_2_4_0}/share/java/jogl*.jar $out/gephi/modules/ext/org.gephi.visualization/org-jogamp-jogl/
+    cp ${javaPackages.jogl_2_4_0}/share/java/glue*.jar $out/gephi/modules/ext/org.gephi.visualization/org-jogamp-gluegen/
 
-    echo "jdkhome=${jdk}" >> $out/etc/gephi.conf
+    printf "\n\njdkhome=${jdk11}\n" >> $out/etc/gephi.conf
   '';
 
   meta = with lib; {