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rPackages: CRAN and BioC update

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Justin Bedo 2021-11-15 22:12:32 +11:00
parent 6e72069cb4
commit 31eccf77fd
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4 changed files with 587 additions and 531 deletions
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364
pkgs/development/r-modules/bioc-annotation-packages.nix generated
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@ -120,9 +120,9 @@ in with self; {
BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; };
BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; };
CTCF = derive2 { name="CTCF"; version="0.99.4"; sha256="1xp10ra53s59nznnxlgw115j46yg5sy13z6wmhqzv6y789s3p49k"; depends=[]; };
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR]; };
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; };
DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; };
ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[]; };
ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; };
EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; };
@ -133,7 +133,7 @@ in with self; {
EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.7"; sha256="1vsi24q902wqlnbxp8hks03x53n4yh5cmpyyxdvmxfbn1rxfvnyf"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.6"; sha256="16zsqnrb3ypwv0sqfmhqmkxqhp90k21in7bjhjf0zagywsyyhpww"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Sc_sacCer3 = derive2 { name="EpiTxDb.Sc.sacCer3"; version="0.99.5"; sha256="0qlifdpppxxn2xmb0f1ghjbx47a7rrkrzr2lvky5p8lb0dnh3zxv"; depends=[AnnotationHub EpiTxDb]; };
EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase Biostrings GenomeInfoDbData GenomicRanges]; };
EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; };
FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; };
FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; };
@ -192,11 +192,11 @@ in with self; {
Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; };
POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi VariantAnnotation]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
RaExExonProbesetLocation = derive2 { name="RaExExonProbesetLocation"; version="1.15.0"; sha256="1vvcc5zlpgbnqak4y2xywyd82j3s61wvhhp2ap0nni14sdxrl3hd"; depends=[AnnotationDbi]; };
Rattus_norvegicus = derive2 { name="Rattus.norvegicus"; version="1.3.1"; sha256="0bpd7i5jvl2jvf822mhxankx7cqqr4l70xp4f7hcknxw3lxia2f1"; depends=[AnnotationDbi GenomicFeatures GO_db org_Rn_eg_db OrganismDbi TxDb_Rnorvegicus_UCSC_rn5_refGene]; };
RmiR_Hs_miRNA = derive2 { name="RmiR.Hs.miRNA"; version="1.0.7"; sha256="0pybw908mlfrskwhnhc0bfaaqw2z13kvr10apf68s74zs0ss57b4"; depends=[AnnotationDbi]; };
@ -204,8 +204,8 @@ in with self; {
RnAgilentDesign028282_db = derive2 { name="RnAgilentDesign028282.db"; version="3.2.3"; sha256="00qri74spbpym7krk1clx0kl429b1592afk5bfr3j8j3iw99g4af"; depends=[AnnotationDbi org_Rn_eg_db]; };
Roberts2005Annotation_db = derive2 { name="Roberts2005Annotation.db"; version="3.2.3"; sha256="1fc95c6x36n7zbr5ca680hyffxngma26gz0bdzylbw0w4mqmj6ga"; depends=[AnnotationDbi org_Hs_eg_db]; };
SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; };
SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi VariantAnnotation]; };
SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi VariantAnnotation]; };
SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; };
SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
@ -335,9 +335,9 @@ in with self; {
genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; };
gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; };
grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub GenomeInfoDb]; };
grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; };
greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; };
gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[]; };
gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[data_table]; };
h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; };
h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; };
hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; };
@ -492,7 +492,7 @@ in with self; {
illuminaRatv1_db = derive2 { name="illuminaRatv1.db"; version="1.26.0"; sha256="1krpp3pb3h2nrk5jrx54a3v6473qsjnz5wksysy8p4zpisvnxyfb"; depends=[AnnotationDbi org_Rn_eg_db]; };
indac_db = derive2 { name="indac.db"; version="3.2.3"; sha256="0jjkiyhjcjgk9888a96g5w80k8a652cww5dhidbdiq5d8gakbnji"; depends=[AnnotationDbi org_Dm_eg_db]; };
lumiHumanAll_db = derive2 { name="lumiHumanAll.db"; version="1.22.0"; sha256="0kn2m31b4q8r1lm4iwda9i62la4akj0c35pi3khbfvkmdrvbvhd2"; depends=[AnnotationDbi org_Hs_eg_db]; };
lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi lumi]; };
lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi DBI lumi]; };
lumiMouseAll_db = derive2 { name="lumiMouseAll.db"; version="1.22.0"; sha256="00iawk8wb1hnvmy898nl9hc85rfzzwi34lpnv2d37rw4wdn57z33"; depends=[AnnotationDbi org_Mm_eg_db]; };
lumiMouseIDMapping = derive2 { name="lumiMouseIDMapping"; version="1.10.0"; sha256="18mc7vwp2p53ns2paa4glj570shmbq9lk318g3p9nl09mxyadim9"; depends=[AnnotationDbi lumi]; };
lumiRatAll_db = derive2 { name="lumiRatAll.db"; version="1.22.0"; sha256="1yh0q8aw33xsn4phj04v0mhjn8xh3z06jrg7yfi9qz1c985z1gw6"; depends=[AnnotationDbi org_Rn_eg_db]; };
@ -529,8 +529,8 @@ in with self; {
mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.3"; sha256="0947crjk8nj4bzgwz7anran7y2qhd1v8bp9f59ja3628rgjx6cz5"; depends=[AnnotationDbi org_Mm_eg_db]; };
mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; };
mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; };
miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi]; };
miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi miRNAtap]; };
miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi DBI gtools RSQLite]; };
miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; };
mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; };
mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; };
mirna10cdf = derive2 { name="mirna10cdf"; version="2.18.0"; sha256="146gc1dx071vawn29k2m31zpi3wdwykss4qh8znpmbp5qcja4hyb"; depends=[AnnotationDbi]; };
@ -616,175 +616,175 @@ in with self; {
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; };
paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; };
pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; };
phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
@ -868,7 +868,7 @@ in with self; {
sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; };
sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; };
synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; };
synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub synaptome_data]; };
synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; };
targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; };
targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; };
test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; };

120
pkgs/development/r-modules/bioc-experiment-packages.nix generated
View File

@ -22,8 +22,8 @@ in with self; {
AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; };
BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; };
BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[EBImage ExperimentHub]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[Biobase DESeq2 SummarizedExperiment]; };
BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; };
CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; };
@ -35,36 +35,36 @@ in with self; {
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[genomeIntervals]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy limma qvalue]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; };
CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[MSnbase]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; };
DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; };
DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 rtracklayer]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; };
DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase ConsensusClusterPlus frma frmaTools hgu133plus2_db hgu133plus2frmavecs siggenes sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[limma rhdf5]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; };
DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[ExperimentHub]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase limma]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a RedeR RTN]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi S4Vectors SummarizedExperiment]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; };
FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; };
@ -77,15 +77,15 @@ in with self; {
GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; };
GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; };
GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; };
HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter limma splots]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment phyloseq S4Vectors SummarizedExperiment]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; };
@ -93,9 +93,9 @@ in with self; {
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; };
HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase genefilter geneplotter KEGGREST mouse4302_db]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter IHW qvalue SummarizedExperiment]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; };
@ -106,7 +106,7 @@ in with self; {
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; };
LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; };
@ -122,8 +122,8 @@ in with self; {
MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; };
MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; };
MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; };
@ -132,12 +132,12 @@ in with self; {
NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; };
NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; };
NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub ShortRead]; };
NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; };
Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; };
NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub rtracklayer]; };
NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; };
OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; };
ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; };
@ -157,7 +157,7 @@ in with self; {
RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; };
RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase genefilter RNAinteract]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; };
RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; };
@ -171,17 +171,17 @@ in with self; {
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA]; };
RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[biocViews MSnbase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; };
RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.32.0"; sha256="01vqkdk615r84vwczdvciw3vji4rknj8jgxz38jw2gpvi5pdiray"; depends=[BiocManager biocViews MSnbase R_utils]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; };
SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; };
@ -191,13 +191,13 @@ in with self; {
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; };
SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; };
TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; };
@ -207,16 +207,16 @@ in with self; {
TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache SingleCellExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; };
TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; };
TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment SummarizedExperiment]; };
TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; };
WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf tinesath1cdf]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; };
affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; };
@ -229,7 +229,7 @@ in with self; {
benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; };
beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub ExperimentHub]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; };
bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; };
@ -250,7 +250,7 @@ in with self; {
ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; };
celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; };
celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; };
clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; };
@ -260,18 +260,18 @@ in with self; {
curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; };
curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle impute]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub ExperimentHub mia S4Vectors SummarizedExperiment TreeSummarizedExperiment]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.1"; sha256="0dd5b3b7fv75rwmv4ipz84nw8zx9pq4q5fd39fyklfdr5n7jm9qq"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; };
curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment]; };
curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; };
davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; };
depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub ExperimentHub]; };
depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; };
derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; };
dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper viper]; };
dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; };
easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; };
@ -288,7 +288,7 @@ in with self; {
flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[EBImage]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; };
@ -330,7 +330,7 @@ in with self; {
miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; };
microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; };
microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; };
@ -340,7 +340,7 @@ in with self; {
msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; };
msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; };
msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; };
muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; };
mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; };
@ -353,7 +353,7 @@ in with self; {
pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; };
plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; };
@ -365,16 +365,16 @@ in with self; {
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; };
ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5]; };
ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; };
pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; };
pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[MSnbase qPLEXanalyzer]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; };
scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache S4Vectors SingleCellExperiment]; };
scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; };
scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; };
@ -383,27 +383,27 @@ in with self; {
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; };
sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub ExperimentHub]; };
sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase ExperimentHub limma rhdf5 signatureSearch]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; };
spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub BiocFileCache ExperimentHub IRanges S4Vectors scater SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; };
spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer ShortRead]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; };
tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub]; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; };
timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; };
tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; };
tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; };
tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; };

52
pkgs/development/r-modules/bioc-packages.nix generated
View File

@ -47,7 +47,7 @@ in with self; {
AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; };
Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; };
AneuFinder = derive2 { name="AneuFinder"; version="1.22.0"; sha256="0xn8952fkchhx7m8dam6gjy86j551xp1cs67510s1qrmfgzpkjp0"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; };
AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.1"; sha256="1svh5zcb7ymz463z5641l2cvzniswxasjjix2plfhqs0yqf1j9qg"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; };
AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.2"; sha256="01zwq14msbbwzxv8rgpmyr74ymvhq0vnmxkxxwd886iac5vjlgi8"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; };
AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; };
AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; };
AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.0"; sha256="0ks8yzvvs2r66pb9687mkskf0n3wgvp7h92k83b0a1q32sca5wng"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; };
@ -86,7 +86,7 @@ in with self; {
BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.22.0"; sha256="14rs6fk15w2rddyqppf32n0c02gw83b7c8cpmsx11xz6fx7ib5k6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; };
BatchQC = derive2 { name="BatchQC"; version="1.22.0"; sha256="0rbpvgxzikpyhxbxksg7vwmy2r0gzw103dykx1awbxkkvrkhl7kf"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; };
BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.20.0"; sha256="08sy0vv1mrbjvvf3ddgxc0ixrbi2mka2g8gjxmx3ylsb6w7vxcy4"; depends=[Biobase]; };
BayesSpace = derive2 { name="BayesSpace"; version="1.4.0"; sha256="0dijc66a55mjm9clpx0668by3x7k57ihywjyf042sz8b8pf9ijd9"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; };
BayesSpace = derive2 { name="BayesSpace"; version="1.4.1"; sha256="1nif6d4hb9zpfx9lczs6j6xniiv0spq6s39jvrs1qazdyysmf4qy"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; };
BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.46.0"; sha256="004cppgdy79fqw2szkgkxir0rxvn91bmfrq4g20sdr7cvh8kpfyi"; depends=[]; };
BgeeCall = derive2 { name="BgeeCall"; version="1.10.0"; sha256="0rbbl8m48qcvl26lnf27jq108p7pi84m9ac3qcpjc0ax5wywbv16"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; };
BgeeDB = derive2 { name="BgeeDB"; version="2.20.0"; sha256="0pjymal01sjl5dc37g66wykgxnksarlbvwnbvhg7w0i7y92zavqk"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; };
@ -204,7 +204,7 @@ in with self; {
ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.16.0"; sha256="1ibbfsl2gz5634rljy4bin9h9g5bxzig3z65bvayp4ldmfiz91dm"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; };
ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.18.0"; sha256="1hh3mhfcngyx7cpzns8mjqviy8vfzrvxpv6nyizflpfmsr39mxfk"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; };
ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.28.0"; sha256="05fbq8zvww1nlyykrri0hf4248i1i7w5cr453giagmjq7lgg4v3b"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; };
ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.0"; sha256="1x8px8ylc231g87rd48kmy9y36h26rldbmqjkcj4mgaldvbsj0rp"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; };
ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.2"; sha256="1nr5p1h9131rvbpnh2kizzx9q6f4ycq6rzxy1yqg2pczqcg7hy4x"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; };
ChIPseqR = derive2 { name="ChIPseqR"; version="1.48.0"; sha256="05hxxqmjxpry0j80kyz2400azni0dc64ps7cxfi11h243japhbsf"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
ChIPsim = derive2 { name="ChIPsim"; version="1.48.0"; sha256="1pdsfsk8c92pz22qz2x5rsmk7j9v3dw9c1p96il533ycjafq1xqd"; depends=[Biostrings IRanges ShortRead XVector]; };
ChemmineOB = derive2 { name="ChemmineOB"; version="1.32.0"; sha256="14zwckgg8wqcdjmdk3i8p7f82df4izipq2lfck98l4i0z2p3y0f3"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
@ -294,7 +294,7 @@ in with self; {
DominoEffect = derive2 { name="DominoEffect"; version="1.14.0"; sha256="13lksli177d11rw5692bc5qmp0x5bfkasriccaa28hklnqmbyjsc"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; };
Doscheda = derive2 { name="Doscheda"; version="1.16.0"; sha256="0lpmxnid43fvi41mc5r89mvvxn19baja8f4zr38j3dkb126dr476"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; };
DriverNet = derive2 { name="DriverNet"; version="1.34.0"; sha256="1qfjg5x3m2z5yjm0lgnw7rqhclic2fgzcdnq0nnwlqyp4i5na10q"; depends=[]; };
DropletUtils = derive2 { name="DropletUtils"; version="1.14.0"; sha256="1zi9pm0ns7w9ga9567rsbm35gyl4fpgic0fvsj5a9ppagqw7ag8z"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; };
DropletUtils = derive2 { name="DropletUtils"; version="1.14.1"; sha256="1nfv5d04jzbd5nv1fazj5qchv59s4cds698r44zfw36z6v83w2d6"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; };
DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.36.0"; sha256="19plcigawh4c4z1dxn1c0kxbdnrsz2fgfyvmcnj0025xscdk4zay"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; };
Dune = derive2 { name="Dune"; version="1.6.0"; sha256="0n267fw1yna1fpg5gcilmf0ijavy2c1ry0wcccp2cdzhs77cx7fi"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; };
DynDoc = derive2 { name="DynDoc"; version="1.72.0"; sha256="1ix1kcjrmbv7hqsmihgazh7igrh13bxhgw36ibihh07sflrgf1hm"; depends=[]; };
@ -339,7 +339,7 @@ in with self; {
FamAgg = derive2 { name="FamAgg"; version="1.22.0"; sha256="14lldajnl8ppy3nyy5mn987mvjfgr2vpx5zp6ky8md308rvgay0k"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; };
FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; };
FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; };
FindIT2 = derive2 { name="FindIT2"; version="1.0.0"; sha256="1kpxkr6qrbhk5a9lg2z0ga6lsb5s9ll9f3cglpyx35494a0d2zp6"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; };
FindIT2 = derive2 { name="FindIT2"; version="1.0.1"; sha256="0rg01zhsvjpk2wyx9c5czm8frm4q4kxlc0v75b55dd77l29amvww"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; };
FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; };
FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; };
FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; };
@ -580,7 +580,7 @@ in with self; {
MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.0"; sha256="0p44g7kv2zyknmiki94w0v4zq1qpa2ly17hbfqkfy9c1xql7b38g"; depends=[checkmate data_table log4r stringi]; };
MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; };
MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.0.0"; sha256="1vf3f3yd9sgaqs9asq1x2819wkj2x68086g8hag1ln6q7q5j0xws"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; };
MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.0"; sha256="0sizx0001gh609fpi5ivq1pa49sprasbsh39kplcybcidq20qcj7"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; };
MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.1"; sha256="0fwriw5hzp0j22c1awv332yb0qazv9w60cgc8j19djzwmsprwvaj"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; };
MSstatsQC = derive2 { name="MSstatsQC"; version="2.12.0"; sha256="087lr0maf5kpl642kvvkd9pyakqxy152rzhvrlaj0rxbrfqgxnsw"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; };
MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.14.0"; sha256="0ygw1zrq219grfy6h650icai9khx49fvdbby5cyydrqbp8m64w77"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; };
MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.8.0"; sha256="0ckdy0qy2s2rvh4ijdddkk9calf1s9s0hr52y0kpgr4mb5zrl0jp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; };
@ -621,7 +621,7 @@ in with self; {
MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; };
MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; };
MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; };
MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.0"; sha256="1wzr98fzrby12v6843f7l1dc0xcsbg9f1lkdg85qkv9j4c6aji52"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; };
MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.1"; sha256="1qhj7vr87pl1aliqn38c980jrgaiz8d462pfv8pcb0l5xgfvpndz"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; };
MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; };
@ -757,7 +757,7 @@ in with self; {
RCASPAR = derive2 { name="RCASPAR"; version="1.40.0"; sha256="0iw17mh880x1pjqs5ffjlc8xicy8qrks8yigb1aiyn4xd00ihf1s"; depends=[]; };
RCM = derive2 { name="RCM"; version="1.10.0"; sha256="082qnzy5q3k5g2qazralj4jwhrdxm1y9xc8dxry5d4l6l6vf77wp"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; };
RCSL = derive2 { name="RCSL"; version="1.2.0"; sha256="01v45b42g0gvhz6h0p1j4865l2cm185ai40bf1fcvjd8747850h4"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; };
RCy3 = derive2 { name="RCy3"; version="2.14.0"; sha256="17jkwbg4ap6nb404hhdaqsy3ixsv8kfvap5m1qdmijw8ip8g64wq"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; };
RCy3 = derive2 { name="RCy3"; version="2.14.1"; sha256="1avfplsg0pl6naxbwvwl3r29idq57r6vpiqnhbzfvj28hra4gdqi"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; };
RCyjs = derive2 { name="RCyjs"; version="2.16.0"; sha256="1xb98gyf847sy5ijv2ka1vsvz64n6fi356qmcgm4k1qhz1jizm6z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; };
RDRToolbox = derive2 { name="RDRToolbox"; version="1.44.0"; sha256="1mlfzvn6imnkj2mrma6nr5cm0qdxjca7vy6hlaidicvwn3jz4129"; depends=[MASS rgl]; };
REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; };
@ -849,16 +849,16 @@ in with self; {
Rmagpie = derive2 { name="Rmagpie"; version="1.50.0"; sha256="0yn1v4z25ifb00xg3mp0ajskv8502yl317pj2j04ax62qny95ykg"; depends=[Biobase e1071 kernlab pamr]; };
RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; };
Rmmquant = derive2 { name="Rmmquant"; version="1.12.0"; sha256="0wklqi37jgdfsf26zgfhq0rvb6xvg4v9z197mcwirqp7y1jm8rmm"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; };
RnBeads = derive2 { name="RnBeads"; version="2.12.0"; sha256="02zh9zlccipj3776il9szlacg1sm9rfqk62vpmxma2zn5al163a4"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; };
RnBeads = derive2 { name="RnBeads"; version="2.12.2"; sha256="042bh4p567xkwqn0hxqji7mk0lhbh0vxdrrhcpya22yyrs1716d0"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; };
RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.0"; sha256="04zf30583wdn2q7wnj3hp81sa1h4dhd6yvl22sj0yxdqw919jvrj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; };
Rnits = derive2 { name="Rnits"; version="1.28.0"; sha256="0wzg0wq0kyarl6s8lmmd6nkqfvvph46bvd4wxh5zy94zqbad7q0b"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
Rsamtools = derive2 { name="Rsamtools"; version="2.10.0"; sha256="0v6b3j45ivd9f04fpfs1vjwby5pi30mf5683bjxim01vi2krj9yh"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; };
Rsubread = derive2 { name="Rsubread"; version="2.8.0"; sha256="09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"; depends=[Matrix]; };
Rsubread = derive2 { name="Rsubread"; version="2.8.1"; sha256="0lpx0dp5570kbrq7v0g573axkhi00qrf38si59vmvnqxhmkvsixn"; depends=[Matrix]; };
Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; };
Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; };
S4Vectors = derive2 { name="S4Vectors"; version="0.32.1"; sha256="0if4mmg0wmfh92khpqkn8ydm7rha0wraa0vnjn6fak3rzlz77ncd"; depends=[BiocGenerics]; };
S4Vectors = derive2 { name="S4Vectors"; version="0.32.2"; sha256="0xrmii2dnwyknpjdiwwjlklgzpbk9q09br27rq5ffz08if9yyk20"; depends=[BiocGenerics]; };
SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; };
SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; };
SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; };
@ -937,7 +937,7 @@ in with self; {
SpatialDecon = derive2 { name="SpatialDecon"; version="1.4.3"; sha256="11hb28m7h78cvzz9s545jzssnbxjbhfmdb03rxbvxq1rdh0whljr"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; };
SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; };
SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
Spectra = derive2 { name="Spectra"; version="1.4.0"; sha256="1kgwm040j23mjihym0kg5r9qz4f1ssfvnd3f6m5jasx59wgpv46f"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; };
Spectra = derive2 { name="Spectra"; version="1.4.1"; sha256="01vaxhk1xz54wxcywnsx8z3qbjchg1i8rv0ks7i2c72sqmamhajc"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; };
SpectralTAD = derive2 { name="SpectralTAD"; version="1.10.0"; sha256="00yx87zkyyzpzkm9slmhs78pqivcfladsrnvh3wwlkgi2rky7qps"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; };
SpidermiR = derive2 { name="SpidermiR"; version="1.24.0"; sha256="1mwqfg5vgc262bhjnbhn8yvjgmqyafc9kzln1a5pidpj5gyr757q"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; };
SplicingFactory = derive2 { name="SplicingFactory"; version="1.2.0"; sha256="0gdk14591slhwnb6rpnksdirzgd7ga03sqkr3k7wndgk5h6dp2jb"; depends=[SummarizedExperiment]; };
@ -1107,9 +1107,9 @@ in with self; {
biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
biocViews = derive2 { name="biocViews"; version="1.62.1"; sha256="1v6himzp546dpb990vv0nlya21w8x2x30137rsmahjzg942nzs9r"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; };
biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; };
biodb = derive2 { name="biodb"; version="1.2.0"; sha256="0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; };
biodb = derive2 { name="biodb"; version="1.2.1"; sha256="1z4adapsnpw6fwanihdz43r11ijypxs5wbndb1i98j8kb7wf308k"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; };
biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; };
biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.1"; sha256="097ia9xzc4pc84n79wadymsmzlip1ygqm54x4fh2hdfinib8mjgb"; depends=[biodb R6 Rcpp testthat]; };
biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.2"; sha256="0q47y6fi6q9qvby3c3g84p3w8r5ks4ilgsgjlv1ava0ys0fc9iiw"; depends=[biodb R6 Rcpp testthat]; };
biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; };
biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; };
biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; };
@ -1166,7 +1166,7 @@ in with self; {
chromDraw = derive2 { name="chromDraw"; version="2.24.0"; sha256="11vvk3m2av7dffwlbg74xlk5f50r1b6fijv820875b7sxhfhxy7x"; depends=[GenomicRanges Rcpp]; };
chromPlot = derive2 { name="chromPlot"; version="1.22.0"; sha256="190h1906007wm14y0ra1nnanacig0yrhcpmnpbanzl68gmjhvalh"; depends=[biomaRt GenomicRanges]; };
chromVAR = derive2 { name="chromVAR"; version="1.16.0"; sha256="0ylsfr540l763bh010irbcavlskahyb1769pppimdgn22gyr3spk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; };
chromstaR = derive2 { name="chromstaR"; version="1.19.0"; sha256="0z511l26fhz00qn8h2yybylk8c3ws8hj1hp8hq9qj9mfczwiqy3j"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; };
chromstaR = derive2 { name="chromstaR"; version="1.20.2"; sha256="1akcmxzn4j9ph4n3lsgfh8fh8hrb28jjamz037w59bsdkcv6wyjq"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; };
chromswitch = derive2 { name="chromswitch"; version="1.16.0"; sha256="0mb26jhrkd99akrfsnx5ziszmwv3ydc6sp140s1wh6jwn6qjws73"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; };
cicero = derive2 { name="cicero"; version="1.12.0"; sha256="1fc69nkm2cwpr6gkfmra2ph0lrmw486chswp4pn8i70ia43fzdm7"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; };
circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.8.0"; sha256="0l83r9idhrha1m21vpnw917m5dlldji49zvx4d25m5g3ia1pkhpf"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; };
@ -1185,7 +1185,7 @@ in with self; {
clusterProfiler = derive2 { name="clusterProfiler"; version="4.2.0"; sha256="18y7482sw0awlhazikq13r2r0zid9ksk942rma87m448y1cq2fi5"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; };
clusterSeq = derive2 { name="clusterSeq"; version="1.18.0"; sha256="1qyycc8wrik54bc2rvzisv6p05jnh1kf68jafqgw9lqpp5gk40bl"; depends=[baySeq BiocGenerics BiocParallel]; };
clusterStab = derive2 { name="clusterStab"; version="1.66.0"; sha256="1863jpdwx27snpil38waj3zr0w2m0q7xj8g1zm8c5cbx9as1cwkd"; depends=[Biobase]; };
clustifyr = derive2 { name="clustifyr"; version="1.5.1"; sha256="0qrbfb04lfj72f7nv001p92a6q8j9ymh24b3c4gfg8pm4dw7m344"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; };
clustifyr = derive2 { name="clustifyr"; version="1.6.0"; sha256="1jz6wfv1b585yf6m9f265ig29p5qxilri40lnpry6h0am2s72xr3"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; };
cmapR = derive2 { name="cmapR"; version="1.6.0"; sha256="0zk96k6z80zkd4q6s4fcn21vmz6y17bfa1sqllvyn3zy237gj132"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; };
cn_farms = derive2 { name="cn.farms"; version="1.42.0"; sha256="062rp52r1wv5wiqjvp0rsjfzqyjgh4v73iir77ivmmimsydv38lm"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
cn_mops = derive2 { name="cn.mops"; version="1.40.0"; sha256="1ibmm87x0wi93ss1p2vmaxwa1xncqx63q42zf7fppmmdgfn4rcvg"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
@ -1250,7 +1250,7 @@ in with self; {
ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; };
dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; };
debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; };
debrowser = derive2 { name="debrowser"; version="1.22.1"; sha256="0z3jq3xb6bbks5hqikmsb4frp8ilvrz741ir9nyq5cfz5v1djwfv"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; };
debrowser = derive2 { name="debrowser"; version="1.22.2"; sha256="006bsqyd8fp1z83jhy1z6w3f0rmb5av8bgrsx2r03n8i7bzrsnq3"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; };
deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; };
decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; };
@ -1299,7 +1299,7 @@ in with self; {
enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; };
enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; };
ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
ensembldb = derive2 { name="ensembldb"; version="2.18.1"; sha256="1272vflafd5c3zna77lxm8895h6cjv2bvs4vbl3ja1nlg97j0zfk"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
ensembldb = derive2 { name="ensembldb"; version="2.18.2"; sha256="0q56gv0isa9ayw505py7i7x65pvcshmd2j1mna1wpbk66wqj4qzx"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; };
epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; };
epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; };
@ -1484,7 +1484,7 @@ in with self; {
immunoClust = derive2 { name="immunoClust"; version="1.26.0"; sha256="0vqn8455spray252b6kg771mwz4b6f51d4k7srg2i3rn7kyp7r38"; depends=[flowCore lattice]; };
immunotation = derive2 { name="immunotation"; version="1.2.0"; sha256="1rdmy46grqjf8ydgq0pgaja3jv4jna0yffw7fmiirfh96m2qvb00"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; };
impute = derive2 { name="impute"; version="1.68.0"; sha256="0k6dil8ljgp5qr87m7hxli4igb36fbxiwczaqc5pi8mlfh70fqj5"; depends=[]; };
infercnv = derive2 { name="infercnv"; version="1.10.0"; sha256="09yipqak5f5v8sf6kdnwl7v3xiaf15lpg6dmkw51inbi2vg23g5j"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; };
infercnv = derive2 { name="infercnv"; version="1.10.1"; sha256="1hmkziaz8w4dlcf4zqpd80rxzb5394hqy8y1sgjidk18x42m88v0"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; };
infinityFlow = derive2 { name="infinityFlow"; version="1.4.0"; sha256="1bqkw5z6sxmj10wxzqaszjl5fw4rvfkr9j0w7qvprqyc3335z6a9"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; };
intansv = derive2 { name="intansv"; version="1.34.0"; sha256="1y4s2vpaw0kmzz5qn52yq2dzzivdi5scmxh3w7garbispc6m0v1g"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
interacCircos = derive2 { name="interacCircos"; version="1.4.0"; sha256="1jn3373sj9l5ypc21niv81rfwa2hfmp1g28ab9xx8hdv18rsl8d6"; depends=[htmlwidgets plyr RColorBrewer]; };
@ -1590,14 +1590,14 @@ in with self; {
miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; };
miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; };
miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; };
mia = derive2 { name="mia"; version="1.2.0"; sha256="1bn5wrhx95yyfp178cz3xpxvqvjf6sy6xch510afbr7rarmyjrnp"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; };
mia = derive2 { name="mia"; version="1.2.2"; sha256="0ymikgpskgbx52a525qhyfn0b6jq2zgnda5asj3apq1x9yn1crb1"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; };
miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; };
miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; };
microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; };
microbiome = derive2 { name="microbiome"; version="1.16.0"; sha256="0j00xbw5gh53bfij8q3q2pa8lwvn3wb23vs9lybvlhjp725h064z"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; };
microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.8.0"; sha256="0g3lnwr5v62lkfz5fwdpjs9lr9vb8h8grqqrvwhyin5xmgkr5lnn"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; };
microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.4.0"; sha256="0ghsv6yf6v3b2xqv6a5r2q0glzajmy5wa3qhsnds6v0gj62v5ycg"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; };
microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.0"; sha256="0sd5y2a4gl3j7z3hq1vzdlzv1dbqzdc0ifhk948wrb9mqfmgbqhq"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; };
microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.1"; sha256="1q0d3vi0gvxyj7sala385b7xxy6qynq4agmn6lhfgipw05qr1fyk"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; };
midasHLA = derive2 { name="midasHLA"; version="1.2.0"; sha256="1dnqx9h3qz5p6l19s0nm90a35523cn32ymgg8pri5rc3jfrilv9k"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; };
miloR = derive2 { name="miloR"; version="1.2.0"; sha256="1pvd8kdh6mmv10ryq038qwr07w5g0n6pnpchb653i3dixygkgd94"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; };
mimager = derive2 { name="mimager"; version="1.18.0"; sha256="0xd5yxbljyxzvdr8y28qk1pl9sy44q9pxkpcfmxphsbf6bvy0d5b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; };
@ -1674,7 +1674,7 @@ in with self; {
nuCpos = derive2 { name="nuCpos"; version="1.12.0"; sha256="1sqanvdhmvbyr52mc5hvsp2kdfgy8d8bh2w4av213i96nqmz55vw"; depends=[]; };
nucleR = derive2 { name="nucleR"; version="2.26.0"; sha256="0wfgfjrjvd0gg7i2zjxsc37dk3s7cw4jqd41hrqq31m2iqgbk6lk"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; };
nucleoSim = derive2 { name="nucleoSim"; version="1.22.0"; sha256="1y0f8dlarb5cm3na691ik04f3vwzdfzbd9fvffcgkfj9py6y28n5"; depends=[IRanges S4Vectors]; };
nullranges = derive2 { name="nullranges"; version="1.0.0"; sha256="0n29ij0q96ridwbwvgsyj8c17dbscfgwgama0lxjcbvrdp4dnclh"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; };
nullranges = derive2 { name="nullranges"; version="1.0.1"; sha256="1cj57qq6hhkva2n1nx8d6mbmk04w86h987rydxg61cfc5k1b0j0p"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; };
occugene = derive2 { name="occugene"; version="1.54.0"; sha256="0kri0356b4560liv9c64nvjmyyssyb93xh244k1k2q50yy5il5b0"; depends=[]; };
odseq = derive2 { name="odseq"; version="1.22.0"; sha256="14bkx7b1pc3kdmn1s9vbc5rb3wxzyyi8n56yrkiqvxc99zl3s9cr"; depends=[kebabs mclust msa]; };
oligo = derive2 { name="oligo"; version="1.58.0"; sha256="1cmnnq0d5xsjsx8c8n8wcl6l9d31sbglb8yrsibykcvnhw15fsf6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
@ -1835,7 +1835,7 @@ in with self; {
rhdf5filters = derive2 { name="rhdf5filters"; version="1.6.0"; sha256="05b015pyp3g1crmm2d3ldsa7r5w0khmf87qbl4fv16r6pdggha78"; depends=[Rhdf5lib]; };
riboSeqR = derive2 { name="riboSeqR"; version="1.28.0"; sha256="0nnhjvjl4c9yyfzjf8kcj4yky5cdimicp7lz008sczy19jq4vjhd"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; };
ribor = derive2 { name="ribor"; version="1.6.0"; sha256="0g6z3rlmf3i6w3j0dldycz9k8jbg3d2ilv319270515j0lmmdngc"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; };
ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.0"; sha256="18ix3mp725vmmd1a4jvl9ayby1pjn1pir54a42aflbb8bq0g46rz"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; };
ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.1"; sha256="13wg6vrv69fjz0yqf4s4k1gr09zp3p7bpf6p03an8jah8b566s66"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; };
rmelting = derive2 { name="rmelting"; version="1.10.0"; sha256="0jhlwnllp6zpi5prd9g51c1czi994jvky3f2v84p9hvgf91xf5f8"; depends=[Rdpack rJava]; };
rmspc = derive2 { name="rmspc"; version="1.0.0"; sha256="1fszm50s87xafddspwl6cjg8gbp7mvd16w6ajz8fy0wlc4x5qia3"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; };
rnaEditr = derive2 { name="rnaEditr"; version="1.4.0"; sha256="0hs3g7cr6c8gcvg1svv88r4h68364gfnqsmdjc6llwg2l1j36a8w"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; };
@ -1915,7 +1915,7 @@ in with self; {
seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; };
seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; };
seqsetvis = derive2 { name="seqsetvis"; version="1.14.0"; sha256="053y3vxn7ndwx21d41k5xf6wki37kxlr4ghvfq1w2f9w7cc59yb7"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; };
sesame = derive2 { name="sesame"; version="1.12.0"; sha256="06cmbbf62h7f3rv1ika6x3cpsd4mghi9wmv5a4gi1fasxh6h84y9"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; };
sesame = derive2 { name="sesame"; version="1.12.1"; sha256="0wqa0zvmnkgl0bb6x9d3vdvnpbhiis76fp0j1zzj18453zjd9kzn"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; };
sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; };
sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; };
shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
@ -1991,7 +1991,7 @@ in with self; {
synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; };
synergyfinder = derive2 { name="synergyfinder"; version="3.2.2"; sha256="0kpvp0lamchbgs4p34pbq14y3zrmgk0pgil0qhsrm3kv1pizk1w8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; };
synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
systemPipeR = derive2 { name="systemPipeR"; version="2.0.0"; sha256="0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; };
systemPipeR = derive2 { name="systemPipeR"; version="2.0.1"; sha256="1r0qc1pyff9nvjix21xjd6fmka06ywr4ipr8szm52hq41hwaiqgq"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; };
systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; };
systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; };
tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; };
@ -2042,7 +2042,7 @@ in with self; {
twilight = derive2 { name="twilight"; version="1.70.0"; sha256="1fy01p3fgajc2jhc286b51mcynj0lrzv3ln21kyj981qk2c390qq"; depends=[Biobase]; };
twoddpcr = derive2 { name="twoddpcr"; version="1.18.0"; sha256="0b8r7dvqjlswkpfy141kibldj9aw3w8wxw0swmcgxkivml4gz1sw"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; };
txcutr = derive2 { name="txcutr"; version="1.0.0"; sha256="0vzdbn75d9hvb4ni5ra7z4s52rbbl3sdi6kpidy421l3sb5clbsj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; };
tximeta = derive2 { name="tximeta"; version="1.12.0"; sha256="03fbz6pka7bcbhd0bblgckyxsqhzp4n8qp2dcpdb3sr01lyw4bc5"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; };
tximeta = derive2 { name="tximeta"; version="1.12.3"; sha256="15l1jvfis7xzxwwnlqs8xpaf212v1lx513np2dc4l4h7rqhclm2v"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; };
tximport = derive2 { name="tximport"; version="1.22.0"; sha256="0w6pr7s9j8l4fpn3przbfrsyxvzxc3ficgsychvhq3bami9np8g4"; depends=[]; };
uSORT = derive2 { name="uSORT"; version="1.20.0"; sha256="0y6a6ksvbrxyqri0mc01nbls107sacs66zmbjs4qxq52rmy5xvcd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; };
uncoverappLib = derive2 { name="uncoverappLib"; version="1.4.0"; sha256="0nh5z1iirqdiv5q66k1r8byv9dasnzyinl0plan68gxvia770cnb"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };

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pkgs/development/r-modules/cran-packages.nix generated
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