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pythonPackages.rpy2: 3.3.6 -> 3.4.1, cleanup, fix build on darwin

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This commit is contained in:
Sandro Jäckel 2021-01-04 00:01:42 +01:00
parent 95aed5517d
commit 4a184896fc
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GPG Key ID: 3AF5A43A3EECC2E5
1 changed files with 19 additions and 22 deletions
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41
pkgs/development/python-modules/rpy2/default.nix
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@ -1,4 +1,5 @@
{ lib
{ stdenv
, lib
, python
, buildPythonPackage
, fetchpatch
@ -20,30 +21,37 @@
, cffi
, tzlocal
, simplegeneric
, pytest
, pytestCheckHook
, extraRPackages ? []
}:
buildPythonPackage rec {
version = "3.3.6";
version = "3.4.1";
pname = "rpy2";
disabled = isPyPy;
src = fetchPypi {
inherit version pname;
sha256 = "0xvfkxvh01r5ibd5mpisp8bz385hgpn27b988y8v65z7hqr3y1nf";
sha256 = "1qnjjlgh6i31z45jykwd29n1336gq678fn9zw7gh0rv5d6sn0hv4";
};
patches = [
# R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
# This patch sets R_LIBS_SITE when rpy2 is imported.
./rpy2-3.x-r-libs-site.patch
];
postPatch = ''
substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"
substituteInPlace 'requirements.txt' --replace 'pytest' ""
'';
buildInputs = [
R
pcre
lzma
bzip2
zlib
icu
# is in the upstream `requires` although it shouldn't be -- this is easier than patching it away
pytest
] ++ (with rPackages; [
# packages expected by the test framework
ggplot2
@ -58,23 +66,10 @@ buildPythonPackage rec {
tidyr
]) ++ extraRPackages ++ rWrapper.recommendedPackages;
checkPhase = ''
pytest
'';
nativeBuildInputs = [
R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly)
];
patches = [
# R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
# This patch sets R_LIBS_SITE when rpy2 is imported.
./rpy2-3.x-r-libs-site.patch
];
postPatch = ''
substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"
'';
propagatedBuildInputs = [
ipython
jinja2
@ -86,8 +81,10 @@ buildPythonPackage rec {
simplegeneric
];
doCheck = !stdenv.isDarwin;
checkInputs = [
pytest
pytestCheckHook
];
meta = {