mirror of
https://github.com/ilyakooo0/nixpkgs.git
synced 2024-11-19 02:44:17 +03:00
work on fixing up bioconductor packages
This commit is contained in:
Jeffrey David Johnson
parent
e98a231af8
commit
518fd135ed
@ -698,6 +698,309 @@ let
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# Packages which cannot be installed due to lack of dependencies or other reasons.
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brokenPackages = [
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"rsvg" # broken build
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"Rothermel" # broken build
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"rfPermute" # broken build
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"redland" # broken build
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"RAppArmor" # broken build
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"permGPU" # broken build
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"pdftools" # broken build
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"OceanView" # broken build
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"MSeasyTkGUI" # broken build
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"mrMLM" # broken build
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"MonetDBLite" # broken build
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"MixGHD" # broken build
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"LCMCR" # broken build
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"hunspell" # broken build
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"googleformr" # broken build
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"ggseas" # depends on broken package x13binary
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"seasonal" # depends on broken package x13binary
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"gunsales" # depends on broken package x13binary
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"x13binary" # broken build
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"fds" # broken build
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"exifr" # broken build
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"TTAinterfaceTrendAnalysis" # depends on broken package euroMix
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"stylo" # depends on broken package euroMix
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"stosim" # depends on broken package euroMix
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"SRRS" # depends on broken package euroMix
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"rite" # depends on broken package euroMix
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"MBCB" # depends on broken package euroMix
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"forensim" # depends on broken package euroMix
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"dynBiplotGUI" # depends on broken package euroMix
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"cncaGUI" # depends on broken package euroMix
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"biplotbootGUI" # depends on broken package euroMix
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"AnthropMMD" # depends on broken package euroMix
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"ilc" # depends on broken package demography
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"demography" # broken build
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"webbioc" # depends on broken package limma
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"davidTiling" # depends on broken package limma
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"tilingArray" # depends on broken package limma
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"NAPPA" # depends on broken package limma
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"NanoStringNorm" # depends on broken package limma
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"synapterdata" # depends on broken package limma
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"synapter" # depends on broken package limma
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"RforProteomics" # depends on broken package limma
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"pRolocdata" # depends on broken package limma
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"ProCoNA" # depends on broken package limma
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"Pbase" # depends on broken package limma
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"MSnID" # depends on broken package limma
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"msmsEDA" # depends on broken package limma
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"MSnbase" # depends on broken package limma
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"staRank" # depends on broken package limma
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"phenoDist" # depends on broken package limma
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"imageHTS" # depends on broken package limma
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"Mulder2012" # depends on broken package limma
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"HTSanalyzeR" # depends on broken package limma
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"gespeR" # depends on broken package limma
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"cellHTS2" # depends on broken package limma
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"affyPara" # depends on broken package limma
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"vsn" # depends on broken package limma
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"ttScreening" # depends on broken package limma
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"metaX" # depends on broken package limma
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"SSPA" # depends on broken package limma
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"SQDA" # depends on broken package limma
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"ADaCGH2" # depends on broken package limma
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"snapCGH" # depends on broken package limma
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"Shrinkage" # depends on broken package limma
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"SafeQuant" # depends on broken package limma
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"RTopper" # depends on broken package limma
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"RTCGAToolbox" # depends on broken package limma
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"RPPanalyzer" # depends on broken package limma
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"Rnits" # depends on broken package limma
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"RNAinteractMAPK" # depends on broken package limma
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"RNAinteract" # depends on broken package limma
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"SimBindProfiles" # depends on broken package limma
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"ccTutorial" # depends on broken package limma
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"Ringo" # depends on broken package limma
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"rCGH" # depends on broken package limma
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"qusage" # depends on broken package limma
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"qpcrNorm" # depends on broken package limma
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"prot2D" # depends on broken package limma
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"polyester" # depends on broken package limma
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"plmDE" # depends on broken package limma
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"phenoTest" # depends on broken package limma
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"RANKS" # depends on broken package limma
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"PerfMeas" # depends on broken package limma
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"pepStat" # depends on broken package limma
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"PECA" # depends on broken package limma
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"PADOG" # depends on broken package limma
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"OGSA" # depends on broken package limma
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"nethet" # depends on broken package limma
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"lpNet" # depends on broken package limma
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"nem" # depends on broken package limma
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"monocle" # depends on broken package limma
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"MmPalateMiRNA" # depends on broken package limma
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"miRtest" # depends on broken package limma
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"miRLAB" # depends on broken package limma
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"mGSZ" # depends on broken package limma
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"MAMA" # depends on broken package limma
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"metaMA" # depends on broken package limma
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"msd16s" # depends on broken package limma
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"metagenomeSeq" # depends on broken package limma
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"metabolomics" # depends on broken package limma
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"maSigPro" # depends on broken package limma
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"timecourse" # depends on broken package limma
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"stepNorm" # depends on broken package limma
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"RBM" # depends on broken package limma
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"saps" # depends on broken package limma
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"PharmacoGx" # depends on broken package limma
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"piano" # depends on broken package limma
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"OLINgui" # depends on broken package limma
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"OLIN" # depends on broken package limma
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"nnNorm" # depends on broken package limma
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"ListerEtAlBSseq" # depends on broken package limma
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"compEpiTools" # depends on broken package limma
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"methylPipe" # depends on broken package limma
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"dyebiasexamples" # depends on broken package limma
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"dyebias" # depends on broken package limma
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"CluMix" # depends on broken package limma
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"HCsnip" # depends on broken package limma
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"sigaR" # depends on broken package limma
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"plrs" # depends on broken package limma
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"CGHregions" # depends on broken package limma
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"QDNAseq_mm10" # depends on broken package limma
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"QDNAseq_hg19" # depends on broken package limma
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"QDNAseq" # depends on broken package limma
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"GeneBreak" # depends on broken package limma
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"focalCall" # depends on broken package limma
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"CGHnormaliter" # depends on broken package limma
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"CGHcall" # depends on broken package limma
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"CGHbase" # depends on broken package limma
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"beta7" # depends on broken package limma
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"marray" # depends on broken package limma
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"LVSmiRNA" # depends on broken package limma
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"lmdme" # depends on broken package limma
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"limmaGUI" # depends on broken package limma
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"InPAS" # depends on broken package limma
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"iChip" # depends on broken package limma
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"unifiedWMWqPCR" # depends on broken package limma
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"nondetects" # depends on broken package limma
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"HTqPCR" # depends on broken package limma
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"HD2013SGI" # depends on broken package limma
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"vtpnet" # depends on broken package limma
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"gwascat" # depends on broken package limma
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"gQTLstats" # depends on broken package limma
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"GOsummaries" # depends on broken package limma
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"yri1kgv" # depends on broken package limma
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"hmyriB36" # depends on broken package limma
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"cheung2010" # depends on broken package limma
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"GGtools" # depends on broken package limma
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"GGdata" # depends on broken package limma
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"encoDnaseI" # depends on broken package limma
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"dsQTL" # depends on broken package limma
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"ceuhm3" # depends on broken package limma
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"ceu1kgv" # depends on broken package limma
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"ceu1kg" # depends on broken package limma
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"GGBase" # depends on broken package limma
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"GeneSelector" # depends on broken package limma
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"GeneSelectMMD" # depends on broken package limma
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"gCMAPWeb" # depends on broken package limma
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"gCMAP" # depends on broken package limma
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"flowBin" # depends on broken package limma
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"Fletcher2013a" # depends on broken package limma
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"FEM" # depends on broken package limma
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"explorase" # depends on broken package limma
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"ExiMiR" # depends on broken package limma
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"tweeDEseq" # depends on broken package limma
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"tRanslatome" # depends on broken package limma
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"ToPASeq" # depends on broken package limma
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"timeSeq" # depends on broken package limma
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"TCGAbiolinks" # depends on broken package limma
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"TCC" # depends on broken package limma
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"systemPipeR" # depends on broken package limma
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"STATegRa" # depends on broken package limma
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"ssizeRNA" # depends on broken package limma
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"RUVSeq" # depends on broken package limma
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"RnaSeqSampleSizeData" # depends on broken package limma
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"RnaSeqSampleSize" # depends on broken package limma
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"rnaSeqMap" # depends on broken package limma
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"ReportingTools" # depends on broken package limma
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"QuasiSeq" # depends on broken package limma
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"PROPER" # depends on broken package limma
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"myTAI" # depends on broken package limma
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"msmsTests" # depends on broken package limma
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"methylMnM" # depends on broken package limma
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"metaseqR" # depends on broken package limma
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"MEDIPS" # depends on broken package limma
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"manta" # depends on broken package limma
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"HTSFilter" # depends on broken package limma
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"HTSCluster" # depends on broken package limma
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"GSAgm" # depends on broken package limma
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"fdrDiscreteNull" # depends on broken package limma
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"erccdashboard" # depends on broken package limma
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"EnrichmentBrowser" # depends on broken package limma
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"edgeRun" # depends on broken package limma
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"EDDA" # depends on broken package limma
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"RnaSeqTutorial" # depends on broken package limma
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"easyRNASeq" # depends on broken package limma
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"DEGreport" # depends on broken package limma
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"Imetagene" # depends on broken package limma
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"metagene" # depends on broken package limma
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"DBChIP" # depends on broken package limma
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"babel" # depends on broken package limma
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"apmsWAPP" # depends on broken package limma
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"ampliQueso" # depends on broken package limma
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"edgeR" # depends on broken package limma
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"MMDiff" # depends on broken package limma
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"ChIPQC" # depends on broken package limma
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"DiffBind" # depends on broken package limma
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"DCGL" # depends on broken package limma
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"Prostar" # depends on broken package limma
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"DAPAR" # depends on broken package limma
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"DAAGbio" # depends on broken package limma
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"csaw" # depends on broken package limma
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"cp4p" # depends on broken package limma
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"coRNAi" # depends on broken package limma
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"Cormotif" # depends on broken package limma
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"CORM" # depends on broken package limma
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"TurboNorm" # depends on broken package limma
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"maigesPack" # depends on broken package limma
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"convert" # depends on broken package limma
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"compcodeR" # depends on broken package limma
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"codelink" # depends on broken package limma
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"clippda" # depends on broken package limma
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"REDseq" # depends on broken package limma
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"GUIDEseq" # depends on broken package limma
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"ggtut" # depends on broken package limma
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"FunciSNP" # depends on broken package limma
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"ChIPpeakAnno" # depends on broken package limma
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"ChIPComp" # depends on broken package limma
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"ChimpHumanBrainData" # depends on broken package limma
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"charmData" # depends on broken package limma
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"charm" # depends on broken package limma
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"cghMCR" # depends on broken package limma
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"CCl4" # depends on broken package limma
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"casper" # depends on broken package limma
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"CancerMutationAnalysis" # depends on broken package limma
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"CALIB" # depends on broken package limma
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"quantro" # depends on broken package limma
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"RnBeads" # depends on broken package limma
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"mvoutData" # depends on broken package limma
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"MineICA" # depends on broken package limma
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"methyAnalysis" # depends on broken package limma
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"MAQCsubsetILM" # depends on broken package limma
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"MAQCsubset" # depends on broken package limma
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"lumiRatIDMapping" # depends on broken package limma
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"lumiMouseIDMapping" # depends on broken package limma
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"lumiHumanIDMapping" # depends on broken package limma
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"lumiBarnes" # depends on broken package limma
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"iCheck" # depends on broken package limma
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"ffpeExampleData" # depends on broken package limma
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"arrayMvout" # depends on broken package limma
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"lumi" # depends on broken package limma
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"ffpe" # depends on broken package limma
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"methylumi" # depends on broken package limma
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"shinyMethyl" # depends on broken package limma
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"MethylAidData" # depends on broken package limma
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"MethylAid" # depends on broken package limma
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"IlluminaHumanMethylation450kmanifest" # depends on broken package limma
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"skewr" # depends on broken package limma
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"wateRmelon" # depends on broken package limma
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"missMethyl" # depends on broken package limma
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"minfiData" # depends on broken package limma
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"IlluminaHumanMethylation450kanno_ilmn12_hg19" # depends on broken package limma
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"IlluminaHumanMethylation27kmanifest" # depends on broken package limma
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"FlowSorted_DLPFC_450k" # depends on broken package limma
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"FlowSorted_Blood_450k" # depends on broken package limma
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"ENmix" # depends on broken package limma
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"ELMER" # depends on broken package limma
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"MEAL" # depends on broken package limma
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"DMRcate" # depends on broken package limma
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"CopyNumber450kData" # depends on broken package limma
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"CopyNumber450k" # depends on broken package limma
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"conumee" # depends on broken package limma
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"ChAMP" # depends on broken package limma
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"minfi" # depends on broken package limma
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"regionReport" # depends on broken package limma
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"derfinderPlot" # depends on broken package limma
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"derfinder" # depends on broken package limma
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"bumphunter" # depends on broken package limma
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"birta" # depends on broken package limma
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"betr" # depends on broken package limma
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"beadarrayMSV" # depends on broken package limma
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"RobLoxBioC" # depends on broken package limma
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"maGUI" # depends on broken package limma
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"epigenomix" # depends on broken package limma
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"blima" # depends on broken package limma
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"BeadArrayUseCases" # depends on broken package limma
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"beadarrayFilter" # depends on broken package limma
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"beadarrayExampleData" # depends on broken package limma
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"beadarray" # depends on broken package limma
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"ballgown" # depends on broken package limma
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"attract" # depends on broken package limma
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"ArrayTools" # depends on broken package limma
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"arrayQuality" # depends on broken package limma
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"DrugVsDisease" # depends on broken package limma
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"ArrayExpress" # depends on broken package limma
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"oneChannelGUI" # depends on broken package limma
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"affylmGUI" # depends on broken package limma
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"AffyExpress" # depends on broken package limma
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"AgiMicroRna" # depends on broken package limma
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"affycoretools" # depends on broken package limma
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"ABSSeq" # depends on broken package limma
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"a4" # depends on broken package limma
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"a4Base" # depends on broken package limma
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"limma" # broken build
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"TransView" # broken build
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"Starr" # broken build
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"SICtools" # broken build
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@ -747,11 +1050,8 @@ let
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"GLMMRR" # depends on broken package lme4
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"replicationInterval" # depends on broken package lme4
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"GWASdata" # depends on broken package GWASTools
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"LLSR" # depends on broken package ggtern
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"ggtern" # broken build
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"EnsemblePCReg" # depends on broken package EnsembleBase
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"EnsembleCV" # depends on broken package EnsembleBase
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"popprxl" # depends on broken package poppr
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"cpgen" # depends on broken package pedigreemm
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"mitml" # depends on broken package jomo
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"IlluminaHumanMethylation450k_db" # broken build
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@ -864,7 +1164,6 @@ let
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"BEST" # broken build
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"bgmm" # depends on broken package nlopt
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"BIFIEsurvey" # depends on broken package nlopt
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"bigGP" # build is broken
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"BiGGR" # depends on broken package rsbml
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"bioassayR" # broken build
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"BiodiversityR" # depends on broken package nlopt
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@ -908,12 +1207,10 @@ let
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"ClustGeo" # depends on broken FactoMineR
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"CNORfuzzy" # depends on broken package nlopt
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"CNVPanelizer" # depends on broken cn.mops
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"coefplot" # build is broken
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"COHCAP" # build is broken
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"colorscience" # broken build
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"compendiumdb" # broken build
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||||
"conformal" # depends on broken package nlopt
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"CopulaDTA" # depends on broken package rstan
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"corHMM" # depends on broken package nlopt
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"CosmoPhotoz" # depends on broken package nlopt
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"covmat" # depends on broken package VIM
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@ -939,17 +1236,14 @@ let
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"DeducerSurvival" # depends on broken package nlopt
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||||
"DeducerText" # depends on broken package nlopt
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||||
"DEGraph" # depends on broken package RCytoscape
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||||
"DescribeDisplay" # build is broken
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||||
"destiny" # depends on broken package VIM
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||||
"DiagTest3Grp" # depends on broken package nlopt
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||||
"diffHic" # depends on broken package rhdf5
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||||
"difR" # depends on broken package nlopt
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||||
"DirichletMultinomial" # Build Is Broken
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||||
"discSurv" # depends on broken package nlopt
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||||
"DistatisR" # depends on broken package nlopt
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"diveRsity" # depends on broken package nlopt
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||||
"DJL" # depends on broken package car
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"doMPI" # build is broken
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||||
"dpa" # depends on broken package nlopt
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"dpcR" # depends on broken nloptr
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"drc" # depends on broken package nlopt
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@ -1033,7 +1327,6 @@ let
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"GUIDE" # depends on broken package rpanel
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"GWAF" # depends on broken package nlopt
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||||
"GWASTools" # broken build
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||||
"h2o" # build is broken
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||||
"h5" # build is broken
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||||
"h5vc" # depends on broken package rhdf5
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"hbsae" # depends on broken package nlopt
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||||
@ -1083,7 +1376,6 @@ let
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"learnstats" # depends on broken package nlopt
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||||
"lefse" # build is broken
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"lessR" # depends on broken package nlopt
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||||
"lfe" # build is broken
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||||
"lgcp" # depends on broken package rpanel
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||||
"Libra" # broken build
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||||
"LinRegInteractive" # depends on broken package rpanel
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||||
@ -1093,7 +1385,6 @@ let
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"LMERConvenienceFunctions" # depends on broken package nlopt
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||||
"lmerTest" # depends on broken package nlopt
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||||
"lmSupport" # depends on broken package nlopt
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||||
"LogisticDx" # depends on broken package nlopt
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||||
"LOGIT" # depends on broken package caret
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||||
"longpower" # depends on broken package nlopt
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||||
"LPTime" # broken build
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||||
@ -1118,7 +1409,6 @@ let
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"metagear" # build is broken
|
||||
"metaheur" # depends on broken package preprocomb
|
||||
"metamisc" # broken build
|
||||
"metaMix" # build is broken
|
||||
"metaplus" # depends on broken package nlopt
|
||||
"metaSEM" # depends on broken package OpenMx
|
||||
"Metatron" # depends on broken package nlopt
|
||||
@ -1134,7 +1424,6 @@ let
|
||||
"mitoODE" # build is broken
|
||||
"mixAK" # depends on broken package nlopt
|
||||
"MixedPoisson" # broken build
|
||||
"MIXFIM" # build is broken
|
||||
"mixlm" # depends on broken package nlopt
|
||||
"MixMAP" # depends on broken package nlopt
|
||||
"mlma" # depends on broken package lme4
|
||||
@ -1185,7 +1474,6 @@ let
|
||||
"oz" # broken build
|
||||
"PAA" # broken build
|
||||
"pamm" # depends on broken package nlopt
|
||||
"PANDA" # build is broken
|
||||
"panelAR" # depends on broken package nlopt
|
||||
"papeR" # depends on broken package nlopt
|
||||
"parboost" # depends on broken package nlopt
|
||||
@ -1193,13 +1481,11 @@ let
|
||||
"partitions" # broken build
|
||||
"PatternClass" # build is broken
|
||||
"PBImisc" # depends on broken package nlopt
|
||||
"PBSddesolve" # build is broken
|
||||
"pcaBootPlot" # depends on broken FactoMineR
|
||||
"pcaL1" # build is broken
|
||||
"pcnetmeta" # broken build
|
||||
"PDQutils" # broken build
|
||||
"pedigreemm" # depends on broken package nlopt
|
||||
"pedometrics" # depends on broken package nlopt
|
||||
"pequod" # depends on broken package nlopt
|
||||
"pglm" # depends on broken package car
|
||||
"PhenStat" # depends on broken package nlopt
|
||||
@ -1212,11 +1498,9 @@ let
|
||||
"plsRbeta" # depends on broken package nlopt
|
||||
"plsRcox" # depends on broken package nlopt
|
||||
"plsRglm" # depends on broken package nlopt
|
||||
"pmclust" # build is broken
|
||||
"pmm" # depends on broken package nlopt
|
||||
"polynom" # broken build
|
||||
"pomp" # depends on broken package nlopt
|
||||
"poppr" # depends on broken package Biostrings
|
||||
"predictmeans" # depends on broken package nlopt
|
||||
"preprocomb" # depends on broken package caret
|
||||
"prevalence" # broken build
|
||||
@ -1226,7 +1510,6 @@ let
|
||||
"PSAboot" # depends on broken package nlopt
|
||||
"ptw" # depends on broken nloptr
|
||||
"PurBayes" # broken build
|
||||
"purge" # depends on broken package lme4
|
||||
"PVAClone" # broken build
|
||||
"pvca" # depends on broken package nlopt
|
||||
"PythonInR" # broken build
|
||||
@ -1296,7 +1579,6 @@ let
|
||||
"Rcpi" # depends on broken package ChemmineR
|
||||
"Rcplex" # Build Is Broken
|
||||
"RcppAPT" # Build Is Broken
|
||||
"RcppOctave" # build is broken
|
||||
"RcppRedis" # build is broken
|
||||
"rcrypt" # broken build
|
||||
"RCytoscape" # Build Is Broken
|
||||
@ -1313,8 +1595,6 @@ let
|
||||
"REST" # depends on broken package nlopt
|
||||
"rgbif" # depends on broken package V8
|
||||
"Rgnuplot" # broken build
|
||||
"rgp" # build is broken
|
||||
"rgpui" # depends on broken package rgp
|
||||
"rhdf5" # build is broken
|
||||
"rjade" # depends on broken package V8
|
||||
"rjags" # broken build
|
||||
@ -1326,7 +1606,6 @@ let
|
||||
"rmgarch" # depends on broken package nlopt
|
||||
"rminer" # depends on broken package nlopt
|
||||
"Rmosek" # build is broken
|
||||
"rmumps" # build is broken
|
||||
"RMySQL" # broken build
|
||||
"RNAither" # depends on broken package nlopt
|
||||
"RnavGraph" # build is broken
|
||||
@ -1344,10 +1623,8 @@ let
|
||||
"RRreg" # depends on broken package lme4
|
||||
"RSAP" # build is broken
|
||||
"rsbml" # build is broken
|
||||
"rscala" # build is broken
|
||||
"RSDA" # depends on broken package nlopt
|
||||
"Rsomoclu" # broken build
|
||||
"rstan" # build is broken
|
||||
"RStoolbox" # depends on broken package caret
|
||||
"Rsymphony" # build is broken
|
||||
"rTableICC" # broken build
|
||||
@ -1403,9 +1680,7 @@ let
|
||||
"splm" # depends on broken package car
|
||||
"spocc" # depends on broken package V8
|
||||
"spoccutils" # depends on broken spocc
|
||||
"spsann" # depends on broken package pedometrics
|
||||
"ssmrob" # depends on broken package nlopt
|
||||
"stagePop" # depends on broken package PBSddesolve
|
||||
"StatMethRank" # broken build
|
||||
"stepp" # depends on broken package nlopt
|
||||
"stringgaussnet" # build is broken
|
||||
|
||||
Loading…
Reference in New Issue
Block a user