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Merge pull request #108251 from prusnak/bowtie2

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bowtie2: 2.3.5.1 -> 2.4.2
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Pavol Rusnak 2021-01-03 13:47:45 +01:00 committed by GitHub
commit 77364ac7c0
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1 changed files with 6 additions and 6 deletions
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12
pkgs/applications/science/biology/bowtie2/default.nix
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@ -1,19 +1,19 @@
{ stdenv, fetchFromGitHub, zlib, tbb, python, perl }:
{ stdenv, fetchFromGitHub, cmake, tbb, zlib }:
stdenv.mkDerivation rec {
pname = "bowtie2";
version = "2.3.5.1";
version = "2.4.2";
src = fetchFromGitHub {
owner = "BenLangmead";
repo = pname;
rev = "v${version}";
sha256 = "1l1f0yhjqqvy4lpxfml1xwv7ayimwbpzazvp0281gb4jb5f5mr1a";
sha256 = "11apzq7l1lk3yxw97g9dfr0gwnvfh58x6apifcblgd66gbip3y1y";
};
buildInputs = [ zlib tbb python perl ];
nativeBuildInputs = [ cmake ];
installFlags = [ "prefix=$(out)" ];
buildInputs = [ tbb zlib ];
meta = with stdenv.lib; {
description = "An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences";
@ -21,6 +21,6 @@ stdenv.mkDerivation rec {
homepage = "http://bowtie-bio.sf.net/bowtie2";
maintainers = with maintainers; [ rybern ];
platforms = platforms.all;
broken = stdenv.isAarch64;
broken = stdenv.isAarch64; # only x86 is supported
};
}