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python311Packages.pot: pypi missing files, switch to github; fixbuild
pypi source is missing tests/conftest.py which is causing the tests to with missing attribute errors
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parent
8ae2bf1e60
commit
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@ -1,10 +1,11 @@
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{ lib
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, autograd
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, buildPythonPackage
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, fetchFromGitHub
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, cupy
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, cvxopt
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, cython
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, fetchPypi
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, oldest-supported-numpy
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, matplotlib
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, numpy
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, tensorflow
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@ -20,19 +21,20 @@
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buildPythonPackage rec {
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pname = "pot";
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version = "0.9.1";
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format = "setuptools";
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pyproject = true;
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disabled = pythonOlder "3.6";
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src = fetchPypi {
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pname = "POT";
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inherit version;
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hash = "sha256-gcJTJ6ABl/8Rwf5SIc8YGtHf/mFWRBUuLhFd3d9eWRs=";
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src = fetchFromGitHub {
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owner = "PythonOT";
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repo = "POT";
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rev = version;
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hash = "sha256-D61/dqO16VvcQx4FG1beKR4y1OQHndwCizaugNaUe4g=";
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};
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nativeBuildInputs = [
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numpy
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cython
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oldest-supported-numpy
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];
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propagatedBuildInputs = [
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@ -59,17 +61,19 @@ buildPythonPackage rec {
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--replace " --cov-report= --cov=ot" "" \
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--replace " --durations=20" "" \
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--replace " --junit-xml=junit-results.xml" ""
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substituteInPlace setup.py \
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--replace '"oldest-supported-numpy", ' ""
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# we don't need setup.py to find the macos sdk for us
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sed -i '/sdk_path/d' setup.py
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'';
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# To prevent importing of an incomplete package from the build directory
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# instead of nix store (`ot` is the top-level package name).
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# need to run the tests with the built package next to the test directory
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preCheck = ''
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rm -r ot
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pushd build/lib.*
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ln -s -t . "$OLDPWD/test"
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'';
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postCheck = ''
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popd
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'';
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disabledTests = [
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@ -100,15 +104,7 @@ buildPythonPackage rec {
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"test_emd1d_device_tf"
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];
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disabledTestPaths = [
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# AttributeError: module pytest has no attribute skip_backend
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"test/test_bregman.py"
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"test/test_da.py"
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"test/test_utils.py"
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"test/test_gromov.py"
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"test/test_helpers.py"
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"test/test_unbalanced.py"
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] ++ lib.optionals (!enableDimensionalityReduction) [
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disabledTestPaths = lib.optionals (!enableDimensionalityReduction) [
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"test/test_dr.py"
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];
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