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cran-packages: combined packages definition files
This commit is contained in:
taku0
Peter Simons
parent
4647743ed7
commit
916e36940b
@ -1,291 +0,0 @@
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# Packages which cannot be installed due to lack of dependencies or other reasons.
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[
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# sort -t '#' -k 2
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"rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
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"MigClim" # SDMTools.So: Undefined Symbol: X
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"PatternClass" # SDMTools.So: Undefined Symbol: X
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"Actigraphy" # SDMTools.so: undefined symbol: X
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"lefse" # SDMTools.so: undefined symbol: X
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"raincpc" # SDMTools.so: undefined symbol: X
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"rainfreq" # SDMTools.so: undefined symbol: X
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"CARrampsOcl" # depends on OpenCL
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"RGA" # jsonlite.so: undefined symbol: XXX
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"RSiteCatalyst" # jsonlite.so: undefined symbol: XXX
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"RSocrata" # jsonlite.so: undefined symbol: XXX
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"SGP" # jsonlite.so: undefined symbol: XXX
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"SocialMediaMineR" # jsonlite.so: undefined symbol: XXX
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"WikipediR" # jsonlite.so: undefined symbol: XXX
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"alm" # jsonlite.so: undefined symbol: XXX
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"archivist" # jsonlite.so: undefined symbol: XXX
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"bold" # jsonlite.so: undefined symbol: XXX
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"enigma" # jsonlite.so: undefined symbol: XXX
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"exCon" # jsonlite.so: undefined symbol: XXX
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"gender" # jsonlite.so: undefined symbol: XXX
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"jSonarR" # jsonlite.so: undefined symbol: XXX
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"leafletR" # jsonlite.so: undefined symbol: XXX
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"opencpu" # jsonlite.so: undefined symbol: XXX
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"pdfetch" # jsonlite.so: undefined symbol: XXX
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"polidata" # jsonlite.so: undefined symbol: XXX
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"pollstR" # jsonlite.so: undefined symbol: XXX
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"rHealthDataGov" # jsonlite.so: undefined symbol: XXX
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"rWBclimate" # jsonlite.so: undefined symbol: XXX
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"rbison" # jsonlite.so: undefined symbol: XXX
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"rinat" # jsonlite.so: undefined symbol: XXX
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"rjstat" # jsonlite.so: undefined symbol: XXX
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"rmongodb" # jsonlite.so: undefined symbol: XXX
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"rnoaa" # jsonlite.so: undefined symbol: XXX
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"rsunlight" # jsonlite.so: undefined symbol: XXX
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"slackr" # jsonlite.so: undefined symbol: XXX
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"webutils" # jsonlite.so: undefined symbol: XXX
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"msarc" # requires AnnotationDbi
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"MetaLandSim" # requires Biobase
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"RobLox" # requires Biobase
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"RobLoxBioC" # requires Biobase
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"compendiumdb" # requires Biobase
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"ktspair" # requires Biobase
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"permGPU" # requires Biobase
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"propOverlap" # requires Biobase
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"GExMap" # requires Biobase and multtest
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"IsoGene" # requires Biobase, and affy
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"mGSZ" # requires Biobase, and limma
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"netweavers" # requires BiocGenerics, Biobase, and limma
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"NCmisc" # requires BiocInstaller
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"EMDomics" # requires BiocParallel
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"RADami" # requires Biostrings
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"ionflows" # requires Biostrings
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"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
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"SimRAD" # requires Biostrings, and ShortRead
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"SeqFeatR" # requires Biostrings, qvalue, and widgetTools
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"OpenCL" # requires CL/opencl.h
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"cplexAPI" # requires CPLEX
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"empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges
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"CHAT" # requires DNAcopy
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"PSCBS" # requires DNAcopy
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"ParDNAcopy" # requires DNAcopy
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"Rcell" # requires EBImage
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"RockFab" # requires EBImage
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"gitter" # requires EBImage
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"rggobi" # requires GGobi
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"PANDA" # requires GO.db
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"BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db
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"PubMedWordcloud" # requires GOsummaries
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"ExomeDepth" # requires GenomicRanges, and Rsamtools
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"HTSDiff" # requires HTSCluster
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"RAM" # requires Heatplus
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"RcppRedis" # requires Hiredis
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"MSIseq" # requires IRanges
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"SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools
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"interval" # requires Icens
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"PhViD" # requires LBE
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"rLindo" # requires LINDO API
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"magma" # requires MAGMA
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"HiPLARM" # requires MAGMA or PLASMA
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"bigGP" # requires MPI running. HELP WANTED!
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"doMPI" # requires MPI running. HELP WANTED!
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"metaMix" # requires MPI running. HELP WANTED!
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"pbdMPI" # requires MPI running. HELP WANTED!
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"pmclust" # requires MPI running. HELP WANTED!
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"MSeasyTkGUI" # requires MSeasyTkGUI
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"bigpca" # requires NCmisc
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"reader" # requires NCmisc
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"ROracle" # requires OCI
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"BRugs" # requires OpenBUGS
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"smart" # requires PMA
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"aroma_cn" # requires PSCBS
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"aroma_core" # requires PSCBS
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"RQuantLib" # requires QuantLib
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"RSeed" # requires RBGL, and graph
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"gRbase" # requires RBGL, and graph
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"ora" # requires ROracle
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"semiArtificial" # requires RSNNS
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"branchLars" # requires Rgraphviz
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"gcExplorer" # requires Rgraphviz
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"hasseDiagram" # requires Rgraphviz
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"hpoPlot" # requires Rgraphviz
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"strum" # requires Rgraphviz
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"dagbag" # requires Rlapack
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"ltsk" # requires Rlapack and Rblas
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"REBayes" # requires Rmosek
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"cqrReg" # requires Rmosek
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"LinRegInteractive" # requires Rpanel
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"RVideoPoker" # requires Rpanel
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"ArrayBin" # requires SAGx
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"RSAP" # requires SAPNWRFCSDK
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"DBKGrad" # requires SDD
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"pubmed_mineR" # requires SSOAP
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"ENA" # requires WGCNA
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"GOGANPA" # requires WGCNA
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"nettools" # requires WGCNA
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"rneos" # requires XMLRPC
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"demi" # requires affy, affxparser, and oligo
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"KANT" # requires affy, and Biobase
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"pathClass" # requires affy, and Biobase
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"ACNE" # requires aroma_affymetrix
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"NSA" # requires aroma_core
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"aroma_affymetrix" # requires aroma_core
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"calmate" # requires aroma_core
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"beadarrayFilter" # requires beadarray
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"PepPrep" # requires biomaRt
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"snplist" # requires biomaRt
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"FunctionalNetworks" # requires breastCancerVDX, and Biobase
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"rJPSGCS" # requires chopsticks
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"clpAPI" # requires clp
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"pcaL1" # requires clp
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"bmrm" # requires clpAPI
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"sequenza" # requires copynumber
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"Rcplex" # requires cplexAPI
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"dcGOR" # requires dnet
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"bcool" # requires doMPI
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"GSAgm" # requires edgeR
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"HTSCluster" # requires edgeR
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"QuasiSeq" # requires edgeR
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"SimSeq" # requires edgeR
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"babel" # requires edgeR
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"edgeRun" # requires edgeR
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"BcDiag" # requires fabia
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"superbiclust" # requires fabia
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"curvHDR" # requires flowCore
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"RbioRXN" # requires fmcsR, and KEGGREST
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"D2C" # requires gRbase
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"LogisticDx" # requires gRbase
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"gRain" # requires gRbase
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"gRc" # requires gRbase
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"gRim" # requires gRbase
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"topologyGSA" # requires gRbase
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"qdap" # requires gender
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"orQA" # requires genefilter
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"apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light
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"miRtest" # requires globaltest, GlobalAncova, and limma
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"PairViz" # requires graph
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"eulerian" # requires graph
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"gRapHD" # requires graph
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"msSurv" # requires graph
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"QuACN" # requires graph, RBGL
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"RnavGraph" # requires graph, and RBGL
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"iRefR" # requires graph, and RBGL
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"pcalg" # requires graph, and RBGL
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"protiq" # requires graph, and RBGL
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"classGraph" # requires graph, and Rgraphviz
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"epoc" # requires graph, and Rgraphviz
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"gridGraphviz" # requires graph, and Rgraphviz
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"ddepn" # requires graph, and genefilter
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"gridDebug" # requires gridGraphviz
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"FAMT" # requires impute
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"PMA" # requires impute
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"WGCNA" # requires impute
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"moduleColor" # requires impute
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"samr" # requires impute
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"swamp" # requires impute
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"MetaDE" # requires impute, and Biobase
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"FHtest" # requires interval
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"RefFreeEWAS" # requires isva
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"AntWeb" # requires leafletR
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"ecoengine" # requires leafletR
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"spocc" # requires leafletR
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"sybilSBML" # requires libSBML
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"RDieHarder" # requires libdieharder
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"CORM" # requires limma
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"DAAGbio" # requires limma
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"DCGL" # requires limma
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"SQDA" # requires limma
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"metaMA" # requires limma
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"plmDE" # requires limma
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"RPPanalyzer" # requires limma, and Biobase
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"PerfMeas" # requires limma, graph, and RBGL
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"MAMA" # requires metaMA
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"Rmosek" # requires mosek
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"PCS" # requires multtest
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"TcGSA" # requires multtest
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"hddplot" # requires multtest
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"mutoss" # requires multtest
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"structSSI" # requires multtest
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"mutossGUI" # requires mutoss
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"Biograph" # requires mvna
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"MSeasy" # requires mzR, and xcms
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"x_ent" # requires opencpu
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"pbdBASE" # requires pbdMPI
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"pbdDEMO" # requires pbdMPI
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"pbdDMAT" # requires pbdMPI
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"pbdSLAP" # requires pbdMPI
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"LOST" # requires pcaMethods
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"agridat" # requires pcaMethods
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"multiDimBio" # requires pcaMethods
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"crmn" # requires pcaMethods, and Biobase
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"imputeLCMD" # requires pcaMethods, and impute
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"MEET" # requires pcaMethods, and seqLogo
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"qtlnet" # requires pcalg
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"SigTree" # requires phyloseq
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"saps" # requires piano, and survcomp
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"surveillance" # requires polyCub
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"aLFQ" # requires protiq
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"NLPutils" # requires qdap
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"NBPSeq" # requires qvalue
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"RSNPset" # requires qvalue
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"evora" # requires qvalue
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"isva" # requires qvalue
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"pi0" # requires qvalue
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"CrypticIBDcheck" # requires rJPSGCS
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"PKgraph" # requires rggobi
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"SeqGrapheR" # requires rggobi
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"beadarrayMSV" # requires rggobi
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"clusterfly" # requires rggobi
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"HierO" # requires rneos
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"fPortfolio" # requires rneos
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"GUIDE" # requires rpanel
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"SDD" # requires rpanel
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"biotools" # requires rpanel
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"erpR" # requires rpanel
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"gamlss_demo" # requires rpanel
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"lgcp" # requires rpanel
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"optBiomarker" # requires rpanel
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"soilphysics" # requires rpanel
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"vows" # requires rpanel
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"PCGSE" # requires safe
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"DepthProc" # requires samr
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"netClass" # requires samr
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"RcmdrPlugin_seeg" # requires seeg
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"EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi
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"GeneticTools" # requires snpStats
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"snpEnrichment" # requires snpStats
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"snpStatsWriter" # requires snpStats
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"wgsea" # requires snpStats
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"rysgran" # requires soiltexture
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"DSpat" # requires spatstat
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"Digiroo2" # requires spatstat
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"ETAS" # requires spatstat
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"GriegSmith" # requires spatstat
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"RImageJROI" # requires spatstat
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"SGCS" # requires spatstat
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"SpatialVx" # requires spatstat
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"adaptsmoFMRI" # requires spatstat
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"ads" # requires spatstat
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"aoristic" # requires spatstat
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"dbmss" # requires spatstat
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"dixon" # requires spatstat
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"dpcR" # requires spatstat
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"ecespa" # requires spatstat
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"ecospat" # requires spatstat
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"intamapInteractive" # requires spatstat
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"latticeDensity" # requires spatstat
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"polyCub" # requires spatstat
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"seeg" # requires spatstat
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"siar" # requires spatstat
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"siplab" # requires spatstat
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"sparr" # requires spatstat
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"spatialsegregation" # requires spatstat
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"stpp" # requires spatstat
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"trip" # requires spatstat
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"dnet" # requires supraHex, graph, Rgraphviz, and Biobase
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"plsRcox" # requires survcomp
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"rsig" # requires survcomp
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"leapp" # requires sva
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"ttScreening" # requires sva, and limma
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"cudaBayesreg" # requres Rmath
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"taxize" # requres bold
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"rsprng" # requres sprng
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"evobiR" # requres taxiz
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"RNeXML" # requres taxize
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"TR8" # requres taxize
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"bdvis" # requres taxize
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]
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@ -164,11 +164,13 @@ let
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in
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builtins.listToAttrs nameValuePairs;
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packagesWithNativeBuildInputs = import ./packages-with-native-build-inputs.nix pkgs;
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packagesWithBuildInputs = import ./packages-with-build-inputs.nix pkgs;
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packagesRequireingX = import ./packages-requireing-x.nix;
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packagesToSkipCheck = import ./packages-to-skip-check.nix;
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brokenPackages = import ./broken-packages.nix;
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inherit (import ./default-overrides.nix stdenv pkgs)
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packagesWithNativeBuildInputs
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packagesWithBuildInputs
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packagesRequireingX
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packagesToSkipCheck
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brokenPackages
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otherOverrides;
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defaultOverrides = old: new:
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let old0 = old; in
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@ -179,8 +181,7 @@ let
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old4 = old3 // (overrideBuildInputs packagesWithBuildInputs old3);
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old5 = old4 // (overrideBroken brokenPackages old4);
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old = old5;
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in old // (import ./default-overrides.nix stdenv pkgs old new);
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in old // (otherOverrides old new);
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# Recursive override pattern.
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# `_self` is a collection of packages;
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@ -1,146 +1,877 @@
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stdenv: pkgs: old: new: {
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RcppArmadillo = old.RcppArmadillo.overrideDerivation (attrs: {
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patchPhase = "patchShebangs configure";
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});
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stdenv: pkgs:
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{
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packagesWithNativeBuildInputs = {
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# sort -t '=' -k 2
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RAppArmor = [ pkgs.apparmor ];
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SOD = [ pkgs.cudatoolkit ]; # requres CL/cl.h
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curl = [ pkgs.curl pkgs.openldap ];
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Rssa = [ pkgs.fftw ];
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fftw = [ pkgs.fftw ];
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fftwtools = [ pkgs.fftw ];
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kza = [ pkgs.fftw ];
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mwaved = [ pkgs.fftw ];
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spate = [ pkgs.fftw ];
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chebpol = [ pkgs.fftw ];
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seewave = [ pkgs.fftw pkgs.libsndfile ];
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rgeos = [ pkgs.geos ];
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Rglpk = [ pkgs.glpk ];
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RCA = [ pkgs.gmp ];
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gmp = [ pkgs.gmp ];
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rcdd = [ pkgs.gmp ];
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igraph = [ pkgs.gmp ];
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glpkAPI = [ pkgs.gmp pkgs.glpk ];
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sdcTable = [ pkgs.gmp pkgs.glpk ];
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Rmpfr = [ pkgs.gmp pkgs.mpfr ];
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BNSP = [ pkgs.gsl ];
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BayesSAE = [ pkgs.gsl ];
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BayesVarSel = [ pkgs.gsl ];
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HiCseg = [ pkgs.gsl ];
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KFKSDS = [ pkgs.gsl ];
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R2GUESS = [ pkgs.gsl ];
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RcppZiggurat = [ pkgs.gsl ];
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SemiCompRisks = [ pkgs.gsl ];
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VBLPCM = [ pkgs.gsl ];
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abn = [ pkgs.gsl ];
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cit = [ pkgs.gsl ];
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libamtrack = [ pkgs.gsl ];
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mixcat = [ pkgs.gsl ];
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outbreaker = [ pkgs.gsl ];
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pcaPA = [ pkgs.gsl ];
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ridge = [ pkgs.gsl ];
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simplexreg = [ pkgs.gsl ];
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stsm = [ pkgs.gsl ];
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survSNP = [ pkgs.gsl ];
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topicmodels = [ pkgs.gsl ];
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RcppGSL = [ pkgs.gsl ];
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bnpmr = [ pkgs.gsl ];
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geoCount = [ pkgs.gsl ];
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gsl = [ pkgs.gsl ];
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mvabund = [ pkgs.gsl ];
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diversitree = [ pkgs.gsl pkgs.fftw ];
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VBmix = [ pkgs.gsl pkgs.fftw pkgs.qt4 ];
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RGtk2 = [ pkgs.gtk2 ];
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cairoDevice = [ pkgs.gtk2 ];
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adimpro = [ pkgs.imagemagick ];
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rjags = [ pkgs.jags ];
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runjags = [ pkgs.jags ];
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JavaGD = [ pkgs.jdk ];
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RODBC = [ pkgs.libiodbc ];
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RODBCext = [ pkgs.libiodbc ];
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jpeg = [ pkgs.libjpeg ];
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EMCluster = [ pkgs.liblapack ];
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png = [ pkgs.libpng ];
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rtiff = [ pkgs.libtiff ];
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tiff = [ pkgs.libtiff ];
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Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo ];
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XML = [ pkgs.libtool pkgs.libxml2 pkgs.xmlsec pkgs.libxslt ];
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rpud = [ pkgs.linuxPackages.nvidia_x11 ];
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CARramps = [ pkgs.linuxPackages.nvidia_x11 pkgs.liblapack ];
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rgl = [ pkgs.mesa pkgs.x11 ];
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ncdf = [ pkgs.netcdf ];
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ncdf4 = [ pkgs.netcdf ];
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pbdNCDF4 = [ pkgs.netcdf ];
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RNetCDF = [ pkgs.netcdf pkgs.udunits ];
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nloptr = [ pkgs.nlopt ];
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npRmpi = [ pkgs.openmpi ];
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pbdPROF = [ pkgs.openmpi ];
|
||||
sprint = [ pkgs.openmpi ];
|
||||
Rmpi = [ pkgs.openmpi ];
|
||||
openssl = [ pkgs.openssl ];
|
||||
PKI = [ pkgs.openssl ];
|
||||
RSclient = [ pkgs.openssl ];
|
||||
Rserve = [ pkgs.openssl ];
|
||||
Rpoppler = [ pkgs.poppler ];
|
||||
audio = [ pkgs.portaudio ];
|
||||
rpg = [ pkgs.postgresql ];
|
||||
RPostgreSQL = [ pkgs.postgresql ];
|
||||
ssanv = [ pkgs.proj ];
|
||||
proj4 = [ pkgs.proj ];
|
||||
rgdal = [ pkgs.proj pkgs.gdal ];
|
||||
RProtoBuf = [ pkgs.protobuf ];
|
||||
rPython = [ pkgs.python ];
|
||||
qtpaint = [ pkgs.qt4 ];
|
||||
qtbase = [ pkgs.qt4 ];
|
||||
BayesXsrc = [ pkgs.readline pkgs.ncurses ];
|
||||
udunits2 = [ pkgs.udunits pkgs.expat ];
|
||||
tkrplot = [ pkgs.xlibs.libX11 ];
|
||||
rzmq = [ pkgs.zeromq2 ];
|
||||
PopGenome = [ pkgs.zlib ];
|
||||
RJaCGH = [ pkgs.zlib ];
|
||||
RcppCNPy = [ pkgs.zlib ];
|
||||
Rniftilib = [ pkgs.zlib ];
|
||||
WhopGenome = [ pkgs.zlib ];
|
||||
devEMF = [ pkgs.zlib ];
|
||||
gdsfmt = [ pkgs.zlib ];
|
||||
rbamtools = [ pkgs.zlib ];
|
||||
rmatio = [ pkgs.zlib ];
|
||||
RVowpalWabbit = [ pkgs.zlib pkgs.boost ];
|
||||
seqminer = [ pkgs.zlib pkgs.bzip2 ];
|
||||
rphast = [ pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
|
||||
rtfbs = [ pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
|
||||
Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
|
||||
SAVE = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ];
|
||||
RcppOctave = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ];
|
||||
rJava = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ];
|
||||
R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
|
||||
sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
|
||||
showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype ];
|
||||
XBRL = [ pkgs.zlib pkgs.libxml2 ];
|
||||
RMySQL = [ pkgs.zlib pkgs.mysql ];
|
||||
};
|
||||
|
||||
rpf = old.rpf.overrideDerivation (attrs: {
|
||||
patchPhase = "patchShebangs configure";
|
||||
});
|
||||
packagesWithBuildInputs = {
|
||||
# sort -t '=' -k 2
|
||||
qtpaint = [ pkgs.cmake ];
|
||||
qtbase = [ pkgs.cmake pkgs.perl ];
|
||||
gmatrix = [ pkgs.cudatoolkit ];
|
||||
WideLM = [ pkgs.cudatoolkit ];
|
||||
RCurl = [ pkgs.curl ];
|
||||
Rgnuplot = [ pkgs.gnuplot ];
|
||||
R2SWF = [ pkgs.pkgconfig ];
|
||||
RGtk2 = [ pkgs.pkgconfig ];
|
||||
RProtoBuf = [ pkgs.pkgconfig ];
|
||||
Rpoppler = [ pkgs.pkgconfig ];
|
||||
VBmix = [ pkgs.pkgconfig ];
|
||||
XML = [ pkgs.pkgconfig ];
|
||||
cairoDevice = [ pkgs.pkgconfig ];
|
||||
chebpol = [ pkgs.pkgconfig ];
|
||||
fftw = [ pkgs.pkgconfig ];
|
||||
geoCount = [ pkgs.pkgconfig ];
|
||||
kza = [ pkgs.pkgconfig ];
|
||||
mwaved = [ pkgs.pkgconfig ];
|
||||
showtext = [ pkgs.pkgconfig ];
|
||||
spate = [ pkgs.pkgconfig ];
|
||||
stringi = [ pkgs.pkgconfig ];
|
||||
sysfonts = [ pkgs.pkgconfig ];
|
||||
Cairo = [ pkgs.pkgconfig ];
|
||||
Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ];
|
||||
qtutils = [ pkgs.qt4 ];
|
||||
tcltk2 = [ pkgs.tcl pkgs.tk ];
|
||||
tikzDevice = [ pkgs.texLive ];
|
||||
rPython = [ pkgs.which ];
|
||||
CARramps = [ pkgs.which pkgs.cudatoolkit ];
|
||||
gputools = [ pkgs.which pkgs.cudatoolkit ];
|
||||
rpud = [ pkgs.which pkgs.cudatoolkit ];
|
||||
adimpro = [ pkgs.which pkgs.xorg.xdpyinfo ];
|
||||
PET = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
|
||||
dti = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
|
||||
};
|
||||
|
||||
BayesXsrc = old.BayesXsrc.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/BayesXsrc.patch ];
|
||||
});
|
||||
packagesRequireingX = [
|
||||
"AnalyzeFMRI"
|
||||
"AnnotLists"
|
||||
"AnthropMMD"
|
||||
"AtelieR"
|
||||
"BAT"
|
||||
"BCA"
|
||||
"BEQI2"
|
||||
"BHMSMAfMRI"
|
||||
"BioGeoBEARS"
|
||||
"BiodiversityR"
|
||||
"CCTpack"
|
||||
"CommunityCorrelogram"
|
||||
"ConvergenceConcepts"
|
||||
"DALY"
|
||||
"DSpat"
|
||||
"Deducer"
|
||||
"DeducerExtras"
|
||||
"DeducerPlugInExample"
|
||||
"DeducerPlugInScaling"
|
||||
"DeducerSpatial"
|
||||
"DeducerSurvival"
|
||||
"DeducerText"
|
||||
"Demerelate"
|
||||
"DescTools"
|
||||
"DivMelt"
|
||||
"ENiRG"
|
||||
"EcoVirtual"
|
||||
"EnQuireR"
|
||||
"FAiR"
|
||||
"FD"
|
||||
"FFD"
|
||||
"FeedbackTS"
|
||||
"FreeSortR"
|
||||
"GGEBiplotGUI"
|
||||
"GPCSIV"
|
||||
"GUniFrac"
|
||||
"Geneland"
|
||||
"GeoGenetix"
|
||||
"GeoXp"
|
||||
"GrammR"
|
||||
"GrapheR"
|
||||
"GroupSeq"
|
||||
"HH"
|
||||
"HiveR"
|
||||
"IsotopeR"
|
||||
"JGR"
|
||||
"KappaGUI"
|
||||
"LS2Wstat"
|
||||
"MAR1"
|
||||
"MTurkR"
|
||||
"MVPARTwrap"
|
||||
"MareyMap"
|
||||
"MergeGUI"
|
||||
"Meth27QC"
|
||||
"MicroStrategyR"
|
||||
"MissingDataGUI"
|
||||
"MplusAutomation"
|
||||
"OligoSpecificitySystem"
|
||||
"OpenRepGrid"
|
||||
"PBSadmb"
|
||||
"PBSmodelling"
|
||||
"PCPS"
|
||||
"PKmodelFinder"
|
||||
"PoMoS"
|
||||
"PopGenReport"
|
||||
"PredictABEL"
|
||||
"PrevMap"
|
||||
"ProbForecastGOP"
|
||||
"QCAGUI"
|
||||
"R2STATS"
|
||||
"RHRV"
|
||||
"RNCEP"
|
||||
"RQDA"
|
||||
"RSDA"
|
||||
"RSurvey"
|
||||
"RandomFields"
|
||||
"Rcmdr"
|
||||
"RcmdrPlugin_BCA"
|
||||
"RcmdrPlugin_DoE"
|
||||
"RcmdrPlugin_EACSPIR"
|
||||
"RcmdrPlugin_EBM"
|
||||
"RcmdrPlugin_EZR"
|
||||
"RcmdrPlugin_EcoVirtual"
|
||||
"RcmdrPlugin_FactoMineR"
|
||||
"RcmdrPlugin_HH"
|
||||
"RcmdrPlugin_IPSUR"
|
||||
"RcmdrPlugin_KMggplot2"
|
||||
"RcmdrPlugin_MA"
|
||||
"RcmdrPlugin_MPAStats"
|
||||
"RcmdrPlugin_NMBU"
|
||||
"RcmdrPlugin_ROC"
|
||||
"RcmdrPlugin_SCDA"
|
||||
"RcmdrPlugin_SLC"
|
||||
"RcmdrPlugin_SM"
|
||||
"RcmdrPlugin_StatisticalURV"
|
||||
"RcmdrPlugin_TeachingDemos"
|
||||
"RcmdrPlugin_UCA"
|
||||
"RcmdrPlugin_coin"
|
||||
"RcmdrPlugin_depthTools"
|
||||
"RcmdrPlugin_doex"
|
||||
"RcmdrPlugin_epack"
|
||||
"RcmdrPlugin_lfstat"
|
||||
"RcmdrPlugin_mosaic"
|
||||
"RcmdrPlugin_orloca"
|
||||
"RcmdrPlugin_plotByGroup"
|
||||
"RcmdrPlugin_pointG"
|
||||
"RcmdrPlugin_qual"
|
||||
"RcmdrPlugin_sampling"
|
||||
"RcmdrPlugin_sos"
|
||||
"RcmdrPlugin_steepness"
|
||||
"RcmdrPlugin_survival"
|
||||
"RcmdrPlugin_temis"
|
||||
"RenextGUI"
|
||||
"RunuranGUI"
|
||||
"SOLOMON"
|
||||
"SPACECAP"
|
||||
"SRRS"
|
||||
"SSDforR"
|
||||
"STEPCAM"
|
||||
"SYNCSA"
|
||||
"Simile"
|
||||
"SimpleTable"
|
||||
"StatDA"
|
||||
"SyNet"
|
||||
"TDMR"
|
||||
"TED"
|
||||
"TIMP"
|
||||
"TTAinterfaceTrendAnalysis"
|
||||
"TestScorer"
|
||||
"VIMGUI"
|
||||
"VecStatGraphs3D"
|
||||
"VisuClust"
|
||||
"WMCapacity"
|
||||
"accrual"
|
||||
"ade4TkGUI"
|
||||
"adehabitat"
|
||||
"analogue"
|
||||
"analogueExtra"
|
||||
"aplpack"
|
||||
"aqfig"
|
||||
"arf3DS4"
|
||||
"asbio"
|
||||
"bayesDem"
|
||||
"betapart"
|
||||
"betaper"
|
||||
"bio_infer"
|
||||
"bipartite"
|
||||
"biplotbootGUI"
|
||||
"blender"
|
||||
"cairoDevice"
|
||||
"cncaGUI"
|
||||
"cocorresp"
|
||||
"confidence"
|
||||
"constrainedKriging"
|
||||
"cpa"
|
||||
"dave"
|
||||
"debug"
|
||||
"detrendeR"
|
||||
"dgmb"
|
||||
"dpa"
|
||||
"dynBiplotGUI"
|
||||
"dynamicGraph"
|
||||
"eVenn"
|
||||
"exactLoglinTest"
|
||||
"fSRM"
|
||||
"fat2Lpoly"
|
||||
"fbati"
|
||||
"feature"
|
||||
"fgui"
|
||||
"fisheyeR"
|
||||
"fit4NM"
|
||||
"forams"
|
||||
"forensim"
|
||||
"fscaret"
|
||||
"gWidgets2RGtk2"
|
||||
"gWidgets2tcltk"
|
||||
"gWidgetsRGtk2"
|
||||
"gWidgetstcltk"
|
||||
"gcmr"
|
||||
"geoR"
|
||||
"geoRglm"
|
||||
"geomorph"
|
||||
"georob"
|
||||
"gnm"
|
||||
"gsubfn"
|
||||
"iBUGS"
|
||||
"iDynoR"
|
||||
"ic50"
|
||||
"in2extRemes"
|
||||
"iplots"
|
||||
"isopam"
|
||||
"likeLTD"
|
||||
"loe"
|
||||
"logmult"
|
||||
"memgene"
|
||||
"metacom"
|
||||
"migui"
|
||||
"miniGUI"
|
||||
"mixsep"
|
||||
"mlDNA"
|
||||
"mpmcorrelogram"
|
||||
"mritc"
|
||||
"multgee"
|
||||
"multibiplotGUI"
|
||||
"nodiv"
|
||||
"onemap"
|
||||
"palaeoSig"
|
||||
"paleoMAS"
|
||||
"pbatR"
|
||||
"pez"
|
||||
"phylotools"
|
||||
"picante"
|
||||
"playwith"
|
||||
"plotSEMM"
|
||||
"plsRbeta"
|
||||
"plsRglm"
|
||||
"pmg"
|
||||
"poppr"
|
||||
"powerpkg"
|
||||
"prefmod"
|
||||
"qtbase"
|
||||
"qtpaint"
|
||||
"qtutils"
|
||||
"r4ss"
|
||||
"rAverage"
|
||||
"rareNMtests"
|
||||
"recluster"
|
||||
"relax"
|
||||
"relimp"
|
||||
"reportRx"
|
||||
"reshapeGUI"
|
||||
"rgl"
|
||||
"rich"
|
||||
"ringscale"
|
||||
"rioja"
|
||||
"ripa"
|
||||
"rite"
|
||||
"rnbn"
|
||||
"rriskDistributions"
|
||||
"rsgcc"
|
||||
"sdcMicroGUI"
|
||||
"sharpshootR"
|
||||
"simba"
|
||||
"soundecology"
|
||||
"spacodiR"
|
||||
"spatsurv"
|
||||
"sqldf"
|
||||
"statcheck"
|
||||
"stosim"
|
||||
"strvalidator"
|
||||
"stylo"
|
||||
"svDialogstcltk"
|
||||
"svIDE"
|
||||
"svSocket"
|
||||
"svWidgets"
|
||||
"tcltk2"
|
||||
"titan"
|
||||
"tkrgl"
|
||||
"tkrplot"
|
||||
"tmap"
|
||||
"tspmeta"
|
||||
"twiddler"
|
||||
"vcdExtra"
|
||||
"vegan"
|
||||
"vegan3d"
|
||||
"vegclust"
|
||||
"x12GUI"
|
||||
"xergm"
|
||||
];
|
||||
|
||||
rJava = old.rJava.overrideDerivation (attrs: {
|
||||
preConfigure = ''
|
||||
export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/
|
||||
export JAVA_HOME=${pkgs.jdk}
|
||||
'';
|
||||
});
|
||||
packagesToSkipCheck = [
|
||||
"Rmpi" # tries to run MPI processes
|
||||
"gmatrix" # requires CUDA runtime
|
||||
"npRmpi" # tries to run MPI processes
|
||||
"sprint" # tries to run MPI processes
|
||||
];
|
||||
|
||||
JavaGD = old.JavaGD.overrideDerivation (attrs: {
|
||||
preConfigure = ''
|
||||
export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/
|
||||
export JAVA_HOME=${pkgs.jdk}
|
||||
'';
|
||||
});
|
||||
# Packages which cannot be installed due to lack of dependencies or other reasons.
|
||||
brokenPackages = [
|
||||
# sort -t '#' -k 2
|
||||
|
||||
Mposterior = old.Mposterior.overrideDerivation (attrs: {
|
||||
PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas";
|
||||
});
|
||||
"rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
|
||||
"MigClim" # SDMTools.So: Undefined Symbol: X
|
||||
"PatternClass" # SDMTools.So: Undefined Symbol: X
|
||||
"Actigraphy" # SDMTools.so: undefined symbol: X
|
||||
"lefse" # SDMTools.so: undefined symbol: X
|
||||
"raincpc" # SDMTools.so: undefined symbol: X
|
||||
"rainfreq" # SDMTools.so: undefined symbol: X
|
||||
"CARrampsOcl" # depends on OpenCL
|
||||
"RGA" # jsonlite.so: undefined symbol: XXX
|
||||
"RSiteCatalyst" # jsonlite.so: undefined symbol: XXX
|
||||
"RSocrata" # jsonlite.so: undefined symbol: XXX
|
||||
"SGP" # jsonlite.so: undefined symbol: XXX
|
||||
"SocialMediaMineR" # jsonlite.so: undefined symbol: XXX
|
||||
"WikipediR" # jsonlite.so: undefined symbol: XXX
|
||||
"alm" # jsonlite.so: undefined symbol: XXX
|
||||
"archivist" # jsonlite.so: undefined symbol: XXX
|
||||
"bold" # jsonlite.so: undefined symbol: XXX
|
||||
"enigma" # jsonlite.so: undefined symbol: XXX
|
||||
"exCon" # jsonlite.so: undefined symbol: XXX
|
||||
"gender" # jsonlite.so: undefined symbol: XXX
|
||||
"jSonarR" # jsonlite.so: undefined symbol: XXX
|
||||
"leafletR" # jsonlite.so: undefined symbol: XXX
|
||||
"opencpu" # jsonlite.so: undefined symbol: XXX
|
||||
"pdfetch" # jsonlite.so: undefined symbol: XXX
|
||||
"polidata" # jsonlite.so: undefined symbol: XXX
|
||||
"pollstR" # jsonlite.so: undefined symbol: XXX
|
||||
"rHealthDataGov" # jsonlite.so: undefined symbol: XXX
|
||||
"rWBclimate" # jsonlite.so: undefined symbol: XXX
|
||||
"rbison" # jsonlite.so: undefined symbol: XXX
|
||||
"rinat" # jsonlite.so: undefined symbol: XXX
|
||||
"rjstat" # jsonlite.so: undefined symbol: XXX
|
||||
"rmongodb" # jsonlite.so: undefined symbol: XXX
|
||||
"rnoaa" # jsonlite.so: undefined symbol: XXX
|
||||
"rsunlight" # jsonlite.so: undefined symbol: XXX
|
||||
"slackr" # jsonlite.so: undefined symbol: XXX
|
||||
"webutils" # jsonlite.so: undefined symbol: XXX
|
||||
"msarc" # requires AnnotationDbi
|
||||
"MetaLandSim" # requires Biobase
|
||||
"RobLox" # requires Biobase
|
||||
"RobLoxBioC" # requires Biobase
|
||||
"compendiumdb" # requires Biobase
|
||||
"ktspair" # requires Biobase
|
||||
"permGPU" # requires Biobase
|
||||
"propOverlap" # requires Biobase
|
||||
"GExMap" # requires Biobase and multtest
|
||||
"IsoGene" # requires Biobase, and affy
|
||||
"mGSZ" # requires Biobase, and limma
|
||||
"netweavers" # requires BiocGenerics, Biobase, and limma
|
||||
"NCmisc" # requires BiocInstaller
|
||||
"EMDomics" # requires BiocParallel
|
||||
"RADami" # requires Biostrings
|
||||
"ionflows" # requires Biostrings
|
||||
"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
|
||||
"SimRAD" # requires Biostrings, and ShortRead
|
||||
"SeqFeatR" # requires Biostrings, qvalue, and widgetTools
|
||||
"OpenCL" # requires CL/opencl.h
|
||||
"cplexAPI" # requires CPLEX
|
||||
"empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges
|
||||
"CHAT" # requires DNAcopy
|
||||
"PSCBS" # requires DNAcopy
|
||||
"ParDNAcopy" # requires DNAcopy
|
||||
"Rcell" # requires EBImage
|
||||
"RockFab" # requires EBImage
|
||||
"gitter" # requires EBImage
|
||||
"rggobi" # requires GGobi
|
||||
"PANDA" # requires GO.db
|
||||
"BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db
|
||||
"PubMedWordcloud" # requires GOsummaries
|
||||
"ExomeDepth" # requires GenomicRanges, and Rsamtools
|
||||
"HTSDiff" # requires HTSCluster
|
||||
"RAM" # requires Heatplus
|
||||
"RcppRedis" # requires Hiredis
|
||||
"MSIseq" # requires IRanges
|
||||
"SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools
|
||||
"interval" # requires Icens
|
||||
"PhViD" # requires LBE
|
||||
"rLindo" # requires LINDO API
|
||||
"magma" # requires MAGMA
|
||||
"HiPLARM" # requires MAGMA or PLASMA
|
||||
"bigGP" # requires MPI running. HELP WANTED!
|
||||
"doMPI" # requires MPI running. HELP WANTED!
|
||||
"metaMix" # requires MPI running. HELP WANTED!
|
||||
"pbdMPI" # requires MPI running. HELP WANTED!
|
||||
"pmclust" # requires MPI running. HELP WANTED!
|
||||
"MSeasyTkGUI" # requires MSeasyTkGUI
|
||||
"bigpca" # requires NCmisc
|
||||
"reader" # requires NCmisc
|
||||
"ROracle" # requires OCI
|
||||
"BRugs" # requires OpenBUGS
|
||||
"smart" # requires PMA
|
||||
"aroma_cn" # requires PSCBS
|
||||
"aroma_core" # requires PSCBS
|
||||
"RQuantLib" # requires QuantLib
|
||||
"RSeed" # requires RBGL, and graph
|
||||
"gRbase" # requires RBGL, and graph
|
||||
"ora" # requires ROracle
|
||||
"semiArtificial" # requires RSNNS
|
||||
"branchLars" # requires Rgraphviz
|
||||
"gcExplorer" # requires Rgraphviz
|
||||
"hasseDiagram" # requires Rgraphviz
|
||||
"hpoPlot" # requires Rgraphviz
|
||||
"strum" # requires Rgraphviz
|
||||
"dagbag" # requires Rlapack
|
||||
"ltsk" # requires Rlapack and Rblas
|
||||
"REBayes" # requires Rmosek
|
||||
"cqrReg" # requires Rmosek
|
||||
"LinRegInteractive" # requires Rpanel
|
||||
"RVideoPoker" # requires Rpanel
|
||||
"ArrayBin" # requires SAGx
|
||||
"RSAP" # requires SAPNWRFCSDK
|
||||
"DBKGrad" # requires SDD
|
||||
"pubmed_mineR" # requires SSOAP
|
||||
"ENA" # requires WGCNA
|
||||
"GOGANPA" # requires WGCNA
|
||||
"nettools" # requires WGCNA
|
||||
"rneos" # requires XMLRPC
|
||||
"demi" # requires affy, affxparser, and oligo
|
||||
"KANT" # requires affy, and Biobase
|
||||
"pathClass" # requires affy, and Biobase
|
||||
"ACNE" # requires aroma_affymetrix
|
||||
"NSA" # requires aroma_core
|
||||
"aroma_affymetrix" # requires aroma_core
|
||||
"calmate" # requires aroma_core
|
||||
"beadarrayFilter" # requires beadarray
|
||||
"PepPrep" # requires biomaRt
|
||||
"snplist" # requires biomaRt
|
||||
"FunctionalNetworks" # requires breastCancerVDX, and Biobase
|
||||
"rJPSGCS" # requires chopsticks
|
||||
"clpAPI" # requires clp
|
||||
"pcaL1" # requires clp
|
||||
"bmrm" # requires clpAPI
|
||||
"sequenza" # requires copynumber
|
||||
"Rcplex" # requires cplexAPI
|
||||
"dcGOR" # requires dnet
|
||||
"bcool" # requires doMPI
|
||||
"GSAgm" # requires edgeR
|
||||
"HTSCluster" # requires edgeR
|
||||
"QuasiSeq" # requires edgeR
|
||||
"SimSeq" # requires edgeR
|
||||
"babel" # requires edgeR
|
||||
"edgeRun" # requires edgeR
|
||||
"BcDiag" # requires fabia
|
||||
"superbiclust" # requires fabia
|
||||
"curvHDR" # requires flowCore
|
||||
"RbioRXN" # requires fmcsR, and KEGGREST
|
||||
"D2C" # requires gRbase
|
||||
"LogisticDx" # requires gRbase
|
||||
"gRain" # requires gRbase
|
||||
"gRc" # requires gRbase
|
||||
"gRim" # requires gRbase
|
||||
"topologyGSA" # requires gRbase
|
||||
"qdap" # requires gender
|
||||
"orQA" # requires genefilter
|
||||
"apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light
|
||||
"miRtest" # requires globaltest, GlobalAncova, and limma
|
||||
"PairViz" # requires graph
|
||||
"eulerian" # requires graph
|
||||
"gRapHD" # requires graph
|
||||
"msSurv" # requires graph
|
||||
"QuACN" # requires graph, RBGL
|
||||
"RnavGraph" # requires graph, and RBGL
|
||||
"iRefR" # requires graph, and RBGL
|
||||
"pcalg" # requires graph, and RBGL
|
||||
"protiq" # requires graph, and RBGL
|
||||
"classGraph" # requires graph, and Rgraphviz
|
||||
"epoc" # requires graph, and Rgraphviz
|
||||
"gridGraphviz" # requires graph, and Rgraphviz
|
||||
"ddepn" # requires graph, and genefilter
|
||||
"gridDebug" # requires gridGraphviz
|
||||
"FAMT" # requires impute
|
||||
"PMA" # requires impute
|
||||
"WGCNA" # requires impute
|
||||
"moduleColor" # requires impute
|
||||
"samr" # requires impute
|
||||
"swamp" # requires impute
|
||||
"MetaDE" # requires impute, and Biobase
|
||||
"FHtest" # requires interval
|
||||
"RefFreeEWAS" # requires isva
|
||||
"AntWeb" # requires leafletR
|
||||
"ecoengine" # requires leafletR
|
||||
"spocc" # requires leafletR
|
||||
"sybilSBML" # requires libSBML
|
||||
"RDieHarder" # requires libdieharder
|
||||
"CORM" # requires limma
|
||||
"DAAGbio" # requires limma
|
||||
"DCGL" # requires limma
|
||||
"SQDA" # requires limma
|
||||
"metaMA" # requires limma
|
||||
"plmDE" # requires limma
|
||||
"RPPanalyzer" # requires limma, and Biobase
|
||||
"PerfMeas" # requires limma, graph, and RBGL
|
||||
"MAMA" # requires metaMA
|
||||
"Rmosek" # requires mosek
|
||||
"PCS" # requires multtest
|
||||
"TcGSA" # requires multtest
|
||||
"hddplot" # requires multtest
|
||||
"mutoss" # requires multtest
|
||||
"structSSI" # requires multtest
|
||||
"mutossGUI" # requires mutoss
|
||||
"Biograph" # requires mvna
|
||||
"MSeasy" # requires mzR, and xcms
|
||||
"x_ent" # requires opencpu
|
||||
"pbdBASE" # requires pbdMPI
|
||||
"pbdDEMO" # requires pbdMPI
|
||||
"pbdDMAT" # requires pbdMPI
|
||||
"pbdSLAP" # requires pbdMPI
|
||||
"LOST" # requires pcaMethods
|
||||
"agridat" # requires pcaMethods
|
||||
"multiDimBio" # requires pcaMethods
|
||||
"crmn" # requires pcaMethods, and Biobase
|
||||
"imputeLCMD" # requires pcaMethods, and impute
|
||||
"MEET" # requires pcaMethods, and seqLogo
|
||||
"qtlnet" # requires pcalg
|
||||
"SigTree" # requires phyloseq
|
||||
"saps" # requires piano, and survcomp
|
||||
"surveillance" # requires polyCub
|
||||
"aLFQ" # requires protiq
|
||||
"NLPutils" # requires qdap
|
||||
"NBPSeq" # requires qvalue
|
||||
"RSNPset" # requires qvalue
|
||||
"evora" # requires qvalue
|
||||
"isva" # requires qvalue
|
||||
"pi0" # requires qvalue
|
||||
"CrypticIBDcheck" # requires rJPSGCS
|
||||
"PKgraph" # requires rggobi
|
||||
"SeqGrapheR" # requires rggobi
|
||||
"beadarrayMSV" # requires rggobi
|
||||
"clusterfly" # requires rggobi
|
||||
"HierO" # requires rneos
|
||||
"fPortfolio" # requires rneos
|
||||
"GUIDE" # requires rpanel
|
||||
"SDD" # requires rpanel
|
||||
"biotools" # requires rpanel
|
||||
"erpR" # requires rpanel
|
||||
"gamlss_demo" # requires rpanel
|
||||
"lgcp" # requires rpanel
|
||||
"optBiomarker" # requires rpanel
|
||||
"soilphysics" # requires rpanel
|
||||
"vows" # requires rpanel
|
||||
"PCGSE" # requires safe
|
||||
"DepthProc" # requires samr
|
||||
"netClass" # requires samr
|
||||
"RcmdrPlugin_seeg" # requires seeg
|
||||
"EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi
|
||||
"GeneticTools" # requires snpStats
|
||||
"snpEnrichment" # requires snpStats
|
||||
"snpStatsWriter" # requires snpStats
|
||||
"wgsea" # requires snpStats
|
||||
"rysgran" # requires soiltexture
|
||||
"DSpat" # requires spatstat
|
||||
"Digiroo2" # requires spatstat
|
||||
"ETAS" # requires spatstat
|
||||
"GriegSmith" # requires spatstat
|
||||
"RImageJROI" # requires spatstat
|
||||
"SGCS" # requires spatstat
|
||||
"SpatialVx" # requires spatstat
|
||||
"adaptsmoFMRI" # requires spatstat
|
||||
"ads" # requires spatstat
|
||||
"aoristic" # requires spatstat
|
||||
"dbmss" # requires spatstat
|
||||
"dixon" # requires spatstat
|
||||
"dpcR" # requires spatstat
|
||||
"ecespa" # requires spatstat
|
||||
"ecospat" # requires spatstat
|
||||
"intamapInteractive" # requires spatstat
|
||||
"latticeDensity" # requires spatstat
|
||||
"polyCub" # requires spatstat
|
||||
"seeg" # requires spatstat
|
||||
"siar" # requires spatstat
|
||||
"siplab" # requires spatstat
|
||||
"sparr" # requires spatstat
|
||||
"spatialsegregation" # requires spatstat
|
||||
"stpp" # requires spatstat
|
||||
"trip" # requires spatstat
|
||||
"dnet" # requires supraHex, graph, Rgraphviz, and Biobase
|
||||
"plsRcox" # requires survcomp
|
||||
"rsig" # requires survcomp
|
||||
"leapp" # requires sva
|
||||
"ttScreening" # requires sva, and limma
|
||||
"cudaBayesreg" # requres Rmath
|
||||
"taxize" # requres bold
|
||||
"rsprng" # requres sprng
|
||||
"evobiR" # requres taxiz
|
||||
"RNeXML" # requres taxize
|
||||
"TR8" # requres taxize
|
||||
"bdvis" # requres taxize
|
||||
];
|
||||
|
||||
qtbase = old.qtbase.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/qtbase.patch ];
|
||||
});
|
||||
otherOverrides = old: new: {
|
||||
RcppArmadillo = old.RcppArmadillo.overrideDerivation (attrs: {
|
||||
patchPhase = "patchShebangs configure";
|
||||
});
|
||||
|
||||
Rmpi = old.Rmpi.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-Rmpi-type=OPENMPI"
|
||||
];
|
||||
});
|
||||
rpf = old.rpf.overrideDerivation (attrs: {
|
||||
patchPhase = "patchShebangs configure";
|
||||
});
|
||||
|
||||
npRmpi = old.npRmpi.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-Rmpi-type=OPENMPI"
|
||||
];
|
||||
});
|
||||
BayesXsrc = old.BayesXsrc.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/BayesXsrc.patch ];
|
||||
});
|
||||
|
||||
Rmpfr = old.Rmpfr.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-mpfr-include=${pkgs.mpfr}/include"
|
||||
];
|
||||
});
|
||||
rJava = old.rJava.overrideDerivation (attrs: {
|
||||
preConfigure = ''
|
||||
export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/
|
||||
export JAVA_HOME=${pkgs.jdk}
|
||||
'';
|
||||
});
|
||||
|
||||
RVowpalWabbit = old.RVowpalWabbit.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-boost=${pkgs.boost.dev}" "--with-boost-libdir=${pkgs.boost.lib}/lib"
|
||||
];
|
||||
});
|
||||
JavaGD = old.JavaGD.overrideDerivation (attrs: {
|
||||
preConfigure = ''
|
||||
export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/
|
||||
export JAVA_HOME=${pkgs.jdk}
|
||||
'';
|
||||
});
|
||||
|
||||
RAppArmor = old.RAppArmor.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/RAppArmor.patch ];
|
||||
LIBAPPARMOR_HOME = "${pkgs.apparmor}";
|
||||
});
|
||||
Mposterior = old.Mposterior.overrideDerivation (attrs: {
|
||||
PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas";
|
||||
});
|
||||
|
||||
RMySQL = old.RMySQL.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-mysql-dir=${pkgs.mysql}"
|
||||
];
|
||||
});
|
||||
qtbase = old.qtbase.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/qtbase.patch ];
|
||||
});
|
||||
|
||||
slfm = old.slfm.overrideDerivation (attrs: {
|
||||
PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas";
|
||||
});
|
||||
Rmpi = old.Rmpi.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-Rmpi-type=OPENMPI"
|
||||
];
|
||||
});
|
||||
|
||||
SamplerCompare = old.SamplerCompare.overrideDerivation (attrs: {
|
||||
PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas";
|
||||
});
|
||||
npRmpi = old.npRmpi.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-Rmpi-type=OPENMPI"
|
||||
];
|
||||
});
|
||||
|
||||
gputools = old.gputools.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/gputools.patch ];
|
||||
CUDA_HOME = "${pkgs.cudatoolkit}";
|
||||
});
|
||||
Rmpfr = old.Rmpfr.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-mpfr-include=${pkgs.mpfr}/include"
|
||||
];
|
||||
});
|
||||
|
||||
# It seems that we cannot override meta attributes with overrideDerivation.
|
||||
CARramps = (old.CARramps.override { hydraPlatforms = stdenv.lib.platforms.none; }).overrideDerivation (attrs: {
|
||||
patches = [ ./patches/CARramps.patch ];
|
||||
configureFlags = [
|
||||
"--with-cuda-home=${pkgs.cudatoolkit}"
|
||||
];
|
||||
});
|
||||
RVowpalWabbit = old.RVowpalWabbit.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-boost=${pkgs.boost.dev}" "--with-boost-libdir=${pkgs.boost.lib}/lib"
|
||||
];
|
||||
});
|
||||
|
||||
gmatrix = old.gmatrix.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/gmatrix.patch ];
|
||||
CUDA_LIB_PATH = "${pkgs.cudatoolkit}/lib64";
|
||||
R_INC_PATH = "${pkgs.R}/lib/R/include";
|
||||
CUDA_INC_PATH = "${pkgs.cudatoolkit}/usr_include";
|
||||
});
|
||||
RAppArmor = old.RAppArmor.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/RAppArmor.patch ];
|
||||
LIBAPPARMOR_HOME = "${pkgs.apparmor}";
|
||||
});
|
||||
|
||||
# It seems that we cannot override meta attributes with overrideDerivation.
|
||||
rpud = (old.rpud.override { hydraPlatforms = stdenv.lib.platforms.none; }).overrideDerivation (attrs: {
|
||||
patches = [ ./patches/rpud.patch ];
|
||||
CUDA_HOME = "${pkgs.cudatoolkit}";
|
||||
});
|
||||
RMySQL = old.RMySQL.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-mysql-dir=${pkgs.mysql}"
|
||||
];
|
||||
});
|
||||
|
||||
WideLM = old.WideLM.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/WideLM.patch ];
|
||||
configureFlags = [
|
||||
"--with-cuda-home=${pkgs.cudatoolkit}"
|
||||
];
|
||||
});
|
||||
slfm = old.slfm.overrideDerivation (attrs: {
|
||||
PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas";
|
||||
});
|
||||
|
||||
EMCluster = old.EMCluster.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/EMCluster.patch ];
|
||||
});
|
||||
SamplerCompare = old.SamplerCompare.overrideDerivation (attrs: {
|
||||
PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas";
|
||||
});
|
||||
|
||||
spMC = old.spMC.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/spMC.patch ];
|
||||
});
|
||||
gputools = old.gputools.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/gputools.patch ];
|
||||
CUDA_HOME = "${pkgs.cudatoolkit}";
|
||||
});
|
||||
|
||||
BayesLogit = old.BayesLogit.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/BayesLogit.patch ];
|
||||
});
|
||||
# It seems that we cannot override meta attributes with overrideDerivation.
|
||||
CARramps = (old.CARramps.override { hydraPlatforms = stdenv.lib.platforms.none; }).overrideDerivation (attrs: {
|
||||
patches = [ ./patches/CARramps.patch ];
|
||||
configureFlags = [
|
||||
"--with-cuda-home=${pkgs.cudatoolkit}"
|
||||
];
|
||||
});
|
||||
|
||||
BayesBridge = old.BayesBridge.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/BayesBridge.patch ];
|
||||
});
|
||||
gmatrix = old.gmatrix.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/gmatrix.patch ];
|
||||
CUDA_LIB_PATH = "${pkgs.cudatoolkit}/lib64";
|
||||
R_INC_PATH = "${pkgs.R}/lib/R/include";
|
||||
CUDA_INC_PATH = "${pkgs.cudatoolkit}/usr_include";
|
||||
});
|
||||
|
||||
openssl = old.openssl.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/openssl.patch ];
|
||||
OPENSSL_HOME = "${pkgs.openssl}";
|
||||
});
|
||||
# It seems that we cannot override meta attributes with overrideDerivation.
|
||||
rpud = (old.rpud.override { hydraPlatforms = stdenv.lib.platforms.none; }).overrideDerivation (attrs: {
|
||||
patches = [ ./patches/rpud.patch ];
|
||||
CUDA_HOME = "${pkgs.cudatoolkit}";
|
||||
});
|
||||
|
||||
Rserve = old.Rserve.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/Rserve.patch ];
|
||||
configureFlags = [
|
||||
"--with-server" "--with-client"
|
||||
];
|
||||
});
|
||||
WideLM = old.WideLM.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/WideLM.patch ];
|
||||
configureFlags = [
|
||||
"--with-cuda-home=${pkgs.cudatoolkit}"
|
||||
];
|
||||
});
|
||||
|
||||
nloptr = old.nloptr.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-nlopt-cflags=-I${pkgs.nlopt}/include"
|
||||
"--with-nlopt-libs='-L${pkgs.nlopt}/lib -lnlopt_cxx -lm'"
|
||||
];
|
||||
});
|
||||
EMCluster = old.EMCluster.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/EMCluster.patch ];
|
||||
});
|
||||
|
||||
spMC = old.spMC.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/spMC.patch ];
|
||||
});
|
||||
|
||||
BayesLogit = old.BayesLogit.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/BayesLogit.patch ];
|
||||
});
|
||||
|
||||
BayesBridge = old.BayesBridge.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/BayesBridge.patch ];
|
||||
});
|
||||
|
||||
openssl = old.openssl.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/openssl.patch ];
|
||||
OPENSSL_HOME = "${pkgs.openssl}";
|
||||
});
|
||||
|
||||
Rserve = old.Rserve.overrideDerivation (attrs: {
|
||||
patches = [ ./patches/Rserve.patch ];
|
||||
configureFlags = [
|
||||
"--with-server" "--with-client"
|
||||
];
|
||||
});
|
||||
|
||||
nloptr = old.nloptr.overrideDerivation (attrs: {
|
||||
configureFlags = [
|
||||
"--with-nlopt-cflags=-I${pkgs.nlopt}/include"
|
||||
"--with-nlopt-libs='-L${pkgs.nlopt}/lib -lnlopt_cxx -lm'"
|
||||
];
|
||||
});
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
@ -1,270 +0,0 @@
|
||||
[
|
||||
"AnalyzeFMRI"
|
||||
"AnnotLists"
|
||||
"AnthropMMD"
|
||||
"AtelieR"
|
||||
"BAT"
|
||||
"BCA"
|
||||
"BEQI2"
|
||||
"BHMSMAfMRI"
|
||||
"BioGeoBEARS"
|
||||
"BiodiversityR"
|
||||
"CCTpack"
|
||||
"CommunityCorrelogram"
|
||||
"ConvergenceConcepts"
|
||||
"DALY"
|
||||
"DSpat"
|
||||
"Deducer"
|
||||
"DeducerExtras"
|
||||
"DeducerPlugInExample"
|
||||
"DeducerPlugInScaling"
|
||||
"DeducerSpatial"
|
||||
"DeducerSurvival"
|
||||
"DeducerText"
|
||||
"Demerelate"
|
||||
"DescTools"
|
||||
"DivMelt"
|
||||
"ENiRG"
|
||||
"EcoVirtual"
|
||||
"EnQuireR"
|
||||
"FAiR"
|
||||
"FD"
|
||||
"FFD"
|
||||
"FeedbackTS"
|
||||
"FreeSortR"
|
||||
"GGEBiplotGUI"
|
||||
"GPCSIV"
|
||||
"GUniFrac"
|
||||
"Geneland"
|
||||
"GeoGenetix"
|
||||
"GeoXp"
|
||||
"GrammR"
|
||||
"GrapheR"
|
||||
"GroupSeq"
|
||||
"HH"
|
||||
"HiveR"
|
||||
"IsotopeR"
|
||||
"JGR"
|
||||
"KappaGUI"
|
||||
"LS2Wstat"
|
||||
"MAR1"
|
||||
"MTurkR"
|
||||
"MVPARTwrap"
|
||||
"MareyMap"
|
||||
"MergeGUI"
|
||||
"Meth27QC"
|
||||
"MicroStrategyR"
|
||||
"MissingDataGUI"
|
||||
"MplusAutomation"
|
||||
"OligoSpecificitySystem"
|
||||
"OpenRepGrid"
|
||||
"PBSadmb"
|
||||
"PBSmodelling"
|
||||
"PCPS"
|
||||
"PKmodelFinder"
|
||||
"PoMoS"
|
||||
"PopGenReport"
|
||||
"PredictABEL"
|
||||
"PrevMap"
|
||||
"ProbForecastGOP"
|
||||
"QCAGUI"
|
||||
"R2STATS"
|
||||
"RHRV"
|
||||
"RNCEP"
|
||||
"RQDA"
|
||||
"RSDA"
|
||||
"RSurvey"
|
||||
"RandomFields"
|
||||
"Rcmdr"
|
||||
"RcmdrPlugin_BCA"
|
||||
"RcmdrPlugin_DoE"
|
||||
"RcmdrPlugin_EACSPIR"
|
||||
"RcmdrPlugin_EBM"
|
||||
"RcmdrPlugin_EZR"
|
||||
"RcmdrPlugin_EcoVirtual"
|
||||
"RcmdrPlugin_FactoMineR"
|
||||
"RcmdrPlugin_HH"
|
||||
"RcmdrPlugin_IPSUR"
|
||||
"RcmdrPlugin_KMggplot2"
|
||||
"RcmdrPlugin_MA"
|
||||
"RcmdrPlugin_MPAStats"
|
||||
"RcmdrPlugin_NMBU"
|
||||
"RcmdrPlugin_ROC"
|
||||
"RcmdrPlugin_SCDA"
|
||||
"RcmdrPlugin_SLC"
|
||||
"RcmdrPlugin_SM"
|
||||
"RcmdrPlugin_StatisticalURV"
|
||||
"RcmdrPlugin_TeachingDemos"
|
||||
"RcmdrPlugin_UCA"
|
||||
"RcmdrPlugin_coin"
|
||||
"RcmdrPlugin_depthTools"
|
||||
"RcmdrPlugin_doex"
|
||||
"RcmdrPlugin_epack"
|
||||
"RcmdrPlugin_lfstat"
|
||||
"RcmdrPlugin_mosaic"
|
||||
"RcmdrPlugin_orloca"
|
||||
"RcmdrPlugin_plotByGroup"
|
||||
"RcmdrPlugin_pointG"
|
||||
"RcmdrPlugin_qual"
|
||||
"RcmdrPlugin_sampling"
|
||||
"RcmdrPlugin_sos"
|
||||
"RcmdrPlugin_steepness"
|
||||
"RcmdrPlugin_survival"
|
||||
"RcmdrPlugin_temis"
|
||||
"RenextGUI"
|
||||
"RunuranGUI"
|
||||
"SOLOMON"
|
||||
"SPACECAP"
|
||||
"SRRS"
|
||||
"SSDforR"
|
||||
"STEPCAM"
|
||||
"SYNCSA"
|
||||
"Simile"
|
||||
"SimpleTable"
|
||||
"StatDA"
|
||||
"SyNet"
|
||||
"TDMR"
|
||||
"TED"
|
||||
"TIMP"
|
||||
"TTAinterfaceTrendAnalysis"
|
||||
"TestScorer"
|
||||
"VIMGUI"
|
||||
"VecStatGraphs3D"
|
||||
"VisuClust"
|
||||
"WMCapacity"
|
||||
"accrual"
|
||||
"ade4TkGUI"
|
||||
"adehabitat"
|
||||
"analogue"
|
||||
"analogueExtra"
|
||||
"aplpack"
|
||||
"aqfig"
|
||||
"arf3DS4"
|
||||
"asbio"
|
||||
"bayesDem"
|
||||
"betapart"
|
||||
"betaper"
|
||||
"bio_infer"
|
||||
"bipartite"
|
||||
"biplotbootGUI"
|
||||
"blender"
|
||||
"cairoDevice"
|
||||
"cncaGUI"
|
||||
"cocorresp"
|
||||
"confidence"
|
||||
"constrainedKriging"
|
||||
"cpa"
|
||||
"dave"
|
||||
"debug"
|
||||
"detrendeR"
|
||||
"dgmb"
|
||||
"dpa"
|
||||
"dynBiplotGUI"
|
||||
"dynamicGraph"
|
||||
"eVenn"
|
||||
"exactLoglinTest"
|
||||
"fSRM"
|
||||
"fat2Lpoly"
|
||||
"fbati"
|
||||
"feature"
|
||||
"fgui"
|
||||
"fisheyeR"
|
||||
"fit4NM"
|
||||
"forams"
|
||||
"forensim"
|
||||
"fscaret"
|
||||
"gWidgets2RGtk2"
|
||||
"gWidgets2tcltk"
|
||||
"gWidgetsRGtk2"
|
||||
"gWidgetstcltk"
|
||||
"gcmr"
|
||||
"geoR"
|
||||
"geoRglm"
|
||||
"geomorph"
|
||||
"georob"
|
||||
"gnm"
|
||||
"gsubfn"
|
||||
"iBUGS"
|
||||
"iDynoR"
|
||||
"ic50"
|
||||
"in2extRemes"
|
||||
"iplots"
|
||||
"isopam"
|
||||
"likeLTD"
|
||||
"loe"
|
||||
"logmult"
|
||||
"memgene"
|
||||
"metacom"
|
||||
"migui"
|
||||
"miniGUI"
|
||||
"mixsep"
|
||||
"mlDNA"
|
||||
"mpmcorrelogram"
|
||||
"mritc"
|
||||
"multgee"
|
||||
"multibiplotGUI"
|
||||
"nodiv"
|
||||
"onemap"
|
||||
"palaeoSig"
|
||||
"paleoMAS"
|
||||
"pbatR"
|
||||
"pez"
|
||||
"phylotools"
|
||||
"picante"
|
||||
"playwith"
|
||||
"plotSEMM"
|
||||
"plsRbeta"
|
||||
"plsRglm"
|
||||
"pmg"
|
||||
"poppr"
|
||||
"powerpkg"
|
||||
"prefmod"
|
||||
"qtbase"
|
||||
"qtpaint"
|
||||
"qtutils"
|
||||
"r4ss"
|
||||
"rAverage"
|
||||
"rareNMtests"
|
||||
"recluster"
|
||||
"relax"
|
||||
"relimp"
|
||||
"reportRx"
|
||||
"reshapeGUI"
|
||||
"rgl"
|
||||
"rich"
|
||||
"ringscale"
|
||||
"rioja"
|
||||
"ripa"
|
||||
"rite"
|
||||
"rnbn"
|
||||
"rriskDistributions"
|
||||
"rsgcc"
|
||||
"sdcMicroGUI"
|
||||
"sharpshootR"
|
||||
"simba"
|
||||
"soundecology"
|
||||
"spacodiR"
|
||||
"spatsurv"
|
||||
"sqldf"
|
||||
"statcheck"
|
||||
"stosim"
|
||||
"strvalidator"
|
||||
"stylo"
|
||||
"svDialogstcltk"
|
||||
"svIDE"
|
||||
"svSocket"
|
||||
"svWidgets"
|
||||
"tcltk2"
|
||||
"titan"
|
||||
"tkrgl"
|
||||
"tkrplot"
|
||||
"tmap"
|
||||
"tspmeta"
|
||||
"twiddler"
|
||||
"vcdExtra"
|
||||
"vegan"
|
||||
"vegan3d"
|
||||
"vegclust"
|
||||
"x12GUI"
|
||||
"xergm"
|
||||
]
|
||||
@ -1,6 +0,0 @@
|
||||
[
|
||||
"Rmpi" # tries to run MPI processes
|
||||
"gmatrix" # requires CUDA runtime
|
||||
"npRmpi" # tries to run MPI processes
|
||||
"sprint" # tries to run MPI processes
|
||||
]
|
||||
@ -1,37 +0,0 @@
|
||||
pkgs: {
|
||||
# sort -t '=' -k 2
|
||||
qtpaint = [ pkgs.cmake ];
|
||||
qtbase = [ pkgs.cmake pkgs.perl ];
|
||||
gmatrix = [ pkgs.cudatoolkit ];
|
||||
WideLM = [ pkgs.cudatoolkit ];
|
||||
RCurl = [ pkgs.curl ];
|
||||
Rgnuplot = [ pkgs.gnuplot ];
|
||||
R2SWF = [ pkgs.pkgconfig ];
|
||||
RGtk2 = [ pkgs.pkgconfig ];
|
||||
RProtoBuf = [ pkgs.pkgconfig ];
|
||||
Rpoppler = [ pkgs.pkgconfig ];
|
||||
VBmix = [ pkgs.pkgconfig ];
|
||||
XML = [ pkgs.pkgconfig ];
|
||||
cairoDevice = [ pkgs.pkgconfig ];
|
||||
chebpol = [ pkgs.pkgconfig ];
|
||||
fftw = [ pkgs.pkgconfig ];
|
||||
geoCount = [ pkgs.pkgconfig ];
|
||||
kza = [ pkgs.pkgconfig ];
|
||||
mwaved = [ pkgs.pkgconfig ];
|
||||
showtext = [ pkgs.pkgconfig ];
|
||||
spate = [ pkgs.pkgconfig ];
|
||||
stringi = [ pkgs.pkgconfig ];
|
||||
sysfonts = [ pkgs.pkgconfig ];
|
||||
Cairo = [ pkgs.pkgconfig ];
|
||||
Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ];
|
||||
qtutils = [ pkgs.qt4 ];
|
||||
tcltk2 = [ pkgs.tcl pkgs.tk ];
|
||||
tikzDevice = [ pkgs.texLive ];
|
||||
rPython = [ pkgs.which ];
|
||||
CARramps = [ pkgs.which pkgs.cudatoolkit ];
|
||||
gputools = [ pkgs.which pkgs.cudatoolkit ];
|
||||
rpud = [ pkgs.which pkgs.cudatoolkit ];
|
||||
adimpro = [ pkgs.which pkgs.xorg.xdpyinfo ];
|
||||
PET = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
|
||||
dti = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
|
||||
}
|
||||
@ -1,118 +0,0 @@
|
||||
pkgs: {
|
||||
# sort -t '=' -k 2
|
||||
RAppArmor = [ pkgs.apparmor ];
|
||||
SOD = [ pkgs.cudatoolkit ]; # requres CL/cl.h
|
||||
curl = [ pkgs.curl pkgs.openldap ];
|
||||
Rssa = [ pkgs.fftw ];
|
||||
fftw = [ pkgs.fftw ];
|
||||
fftwtools = [ pkgs.fftw ];
|
||||
kza = [ pkgs.fftw ];
|
||||
mwaved = [ pkgs.fftw ];
|
||||
spate = [ pkgs.fftw ];
|
||||
chebpol = [ pkgs.fftw ];
|
||||
seewave = [ pkgs.fftw pkgs.libsndfile ];
|
||||
rgeos = [ pkgs.geos ];
|
||||
Rglpk = [ pkgs.glpk ];
|
||||
RCA = [ pkgs.gmp ];
|
||||
gmp = [ pkgs.gmp ];
|
||||
rcdd = [ pkgs.gmp ];
|
||||
igraph = [ pkgs.gmp ];
|
||||
glpkAPI = [ pkgs.gmp pkgs.glpk ];
|
||||
sdcTable = [ pkgs.gmp pkgs.glpk ];
|
||||
Rmpfr = [ pkgs.gmp pkgs.mpfr ];
|
||||
BNSP = [ pkgs.gsl ];
|
||||
BayesSAE = [ pkgs.gsl ];
|
||||
BayesVarSel = [ pkgs.gsl ];
|
||||
HiCseg = [ pkgs.gsl ];
|
||||
KFKSDS = [ pkgs.gsl ];
|
||||
R2GUESS = [ pkgs.gsl ];
|
||||
RcppZiggurat = [ pkgs.gsl ];
|
||||
SemiCompRisks = [ pkgs.gsl ];
|
||||
VBLPCM = [ pkgs.gsl ];
|
||||
abn = [ pkgs.gsl ];
|
||||
cit = [ pkgs.gsl ];
|
||||
libamtrack = [ pkgs.gsl ];
|
||||
mixcat = [ pkgs.gsl ];
|
||||
outbreaker = [ pkgs.gsl ];
|
||||
pcaPA = [ pkgs.gsl ];
|
||||
ridge = [ pkgs.gsl ];
|
||||
simplexreg = [ pkgs.gsl ];
|
||||
stsm = [ pkgs.gsl ];
|
||||
survSNP = [ pkgs.gsl ];
|
||||
topicmodels = [ pkgs.gsl ];
|
||||
RcppGSL = [ pkgs.gsl ];
|
||||
bnpmr = [ pkgs.gsl ];
|
||||
geoCount = [ pkgs.gsl ];
|
||||
gsl = [ pkgs.gsl ];
|
||||
mvabund = [ pkgs.gsl ];
|
||||
diversitree = [ pkgs.gsl pkgs.fftw ];
|
||||
VBmix = [ pkgs.gsl pkgs.fftw pkgs.qt4 ];
|
||||
RGtk2 = [ pkgs.gtk2 ];
|
||||
cairoDevice = [ pkgs.gtk2 ];
|
||||
adimpro = [ pkgs.imagemagick ];
|
||||
rjags = [ pkgs.jags ];
|
||||
runjags = [ pkgs.jags ];
|
||||
JavaGD = [ pkgs.jdk ];
|
||||
RODBC = [ pkgs.libiodbc ];
|
||||
RODBCext = [ pkgs.libiodbc ];
|
||||
jpeg = [ pkgs.libjpeg ];
|
||||
EMCluster = [ pkgs.liblapack ];
|
||||
png = [ pkgs.libpng ];
|
||||
rtiff = [ pkgs.libtiff ];
|
||||
tiff = [ pkgs.libtiff ];
|
||||
Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo ];
|
||||
XML = [ pkgs.libtool pkgs.libxml2 pkgs.xmlsec pkgs.libxslt ];
|
||||
rpud = [ pkgs.linuxPackages.nvidia_x11 ];
|
||||
CARramps = [ pkgs.linuxPackages.nvidia_x11 pkgs.liblapack ];
|
||||
rgl = [ pkgs.mesa pkgs.x11 ];
|
||||
ncdf = [ pkgs.netcdf ];
|
||||
ncdf4 = [ pkgs.netcdf ];
|
||||
pbdNCDF4 = [ pkgs.netcdf ];
|
||||
RNetCDF = [ pkgs.netcdf pkgs.udunits ];
|
||||
nloptr = [ pkgs.nlopt ];
|
||||
npRmpi = [ pkgs.openmpi ];
|
||||
pbdPROF = [ pkgs.openmpi ];
|
||||
sprint = [ pkgs.openmpi ];
|
||||
Rmpi = [ pkgs.openmpi ];
|
||||
openssl = [ pkgs.openssl ];
|
||||
PKI = [ pkgs.openssl ];
|
||||
RSclient = [ pkgs.openssl ];
|
||||
Rserve = [ pkgs.openssl ];
|
||||
Rpoppler = [ pkgs.poppler ];
|
||||
audio = [ pkgs.portaudio ];
|
||||
rpg = [ pkgs.postgresql ];
|
||||
RPostgreSQL = [ pkgs.postgresql ];
|
||||
ssanv = [ pkgs.proj ];
|
||||
proj4 = [ pkgs.proj ];
|
||||
rgdal = [ pkgs.proj pkgs.gdal ];
|
||||
RProtoBuf = [ pkgs.protobuf ];
|
||||
rPython = [ pkgs.python ];
|
||||
qtpaint = [ pkgs.qt4 ];
|
||||
qtbase = [ pkgs.qt4 ];
|
||||
BayesXsrc = [ pkgs.readline pkgs.ncurses ];
|
||||
udunits2 = [ pkgs.udunits pkgs.expat ];
|
||||
tkrplot = [ pkgs.xlibs.libX11 ];
|
||||
rzmq = [ pkgs.zeromq2 ];
|
||||
PopGenome = [ pkgs.zlib ];
|
||||
RJaCGH = [ pkgs.zlib ];
|
||||
RcppCNPy = [ pkgs.zlib ];
|
||||
Rniftilib = [ pkgs.zlib ];
|
||||
WhopGenome = [ pkgs.zlib ];
|
||||
devEMF = [ pkgs.zlib ];
|
||||
gdsfmt = [ pkgs.zlib ];
|
||||
rbamtools = [ pkgs.zlib ];
|
||||
rmatio = [ pkgs.zlib ];
|
||||
RVowpalWabbit = [ pkgs.zlib pkgs.boost ];
|
||||
seqminer = [ pkgs.zlib pkgs.bzip2 ];
|
||||
rphast = [ pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
|
||||
rtfbs = [ pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
|
||||
Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
|
||||
SAVE = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ];
|
||||
RcppOctave = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ];
|
||||
rJava = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ];
|
||||
R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
|
||||
sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
|
||||
showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype ];
|
||||
XBRL = [ pkgs.zlib pkgs.libxml2 ];
|
||||
RMySQL = [ pkgs.zlib pkgs.mysql ];
|
||||
}
|
||||
Loading…
Reference in New Issue
Block a user