ilyakooo0/nixpkgs
1
0
Fork 0
mirror of https://github.com/ilyakooo0/nixpkgs.git synced 2024-12-25 20:34:52 +03:00
Code Issues Projects Releases Wiki Activity

R: add support for Bioconductor packages

Browse Source
This commit is contained in:
Jeffrey David Johnson 2015-05-22 17:51:24 -07:00 committed by Peter Simons
parent 97db35a3b4
commit 93a742fd28
4 changed files with 998 additions and 24 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

15
pkgs/build-support/fetchurl/mirrors.nix
View File

@ -289,6 +289,21 @@ rec {
ftp://ftp.xemacs.org/sites/metalab.unc.edu/
];
# Bioconductor mirrors (from http://bioconductor.org/about/mirrors)
# The commented-out ones don't seem to allow direct package downloads;
# they serve error messages that result in hash mismatches instead.
bioc = [
# http://bioc.ism.ac.jp/3.0/bioc/
# http://bioc.openanalytics.eu/3.0/bioc/
# http://bioconductor.fmrp.usp.br/3.0/bioc/
# http://mirror.aarnet.edu.au/pub/bioconductor/3.0/bioc/
# http://watson.nci.nih.gov/bioc_mirror/3.0/bioc/
http://bioconductor.jp/packages/3.0/bioc/
http://bioconductor.statistik.tu-dortmund.de/packages/3.0/bioc/
http://mirrors.ebi.ac.uk/bioconductor/packages/3.0/bioc/
http://mirrors.ustc.edu.cn/bioc/3.0/bioc/
];
# CRAN mirrors (from http://cran.r-project.org/mirrors.html)
cran = [
http://cran.r-project.org/

943
pkgs/development/r-modules/bioc-packages.nix Normal file
View File

@ -0,0 +1,943 @@
# This file is generated from generate-r-packages.R. DO NOT EDIT.
# Execute the following command to update the file.
#
# Rscript generate-r-packages.R bioc > bioc-packages.nix
{ self, derive }: with self; {
ABSSeq = derive { name="ABSSeq"; version="1.2.0"; sha256="0y8cr6w6jw8ac94jn4kbvrf9kdpjz2hq4s5hfkgd1gnphfkrw4f9"; depends=[]; };
ABarray = derive { name="ABarray"; version="1.34.0"; sha256="0b7vyd3vagbczsf5ppd8pv18yrlzgb818lg1ga3lpzf6yr9gb2kd"; depends=[Biobase multtest]; };
ACME = derive { name="ACME"; version="2.22.0"; sha256="06jhvqm2m27k44pk4iqz1msq3vnkchxvhsamdydsnlv52finfl66"; depends=[Biobase BiocGenerics]; };
ADaCGH2 = derive { name="ADaCGH2"; version="2.6.0"; sha256="15afapvazksy6kgp9fgz57vc96dfhlz6hd0bssgfgjr243qgh2yy"; depends=[DNAcopy tilingArray GLAD aCGH snapCGH]; };
AGDEX = derive { name="AGDEX"; version="1.14.0"; sha256="1kc8k2nqq2jc6hvxxs1abya8k96cc7lba0f3vndijai14lp2ynl0"; depends=[Biobase GSEABase]; };
ALDEx2 = derive { name="ALDEx2"; version="1.0.0"; sha256="0w456qvyjx8m92p0jaawkr8jlp8rqnzic5z49gl4368shl07pfzx"; depends=[GenomicRanges]; };
ARRmNormalization = derive { name="ARRmNormalization"; version="1.6.0"; sha256="108rjwd21z2k45a8dhsd1hs8ssf6gml80wcvg3768bzr0nipsc83"; depends=[]; };
ASEB = derive { name="ASEB"; version="1.10.0"; sha256="0cwm7f9x7msnb5d8iq9d7s84r07iv0h43kjcim4hdmg27ij9a4yv"; depends=[]; };
ASGSCA = derive { name="ASGSCA"; version="1.0.0"; sha256="0j43fm4vdl2s02a32l0bf7lj7j9irj2sgb958zykq42clzfsbcyx"; depends=[]; };
ASSET = derive { name="ASSET"; version="1.4.0"; sha256="1dizmldax3b38zq1i6yvkcwzvir3jy74dmf2j3acbkri9ksxfbyp"; depends=[]; };
ASSIGN = derive { name="ASSIGN"; version="1.2.0"; sha256="0qvhyp2mbmpdv08sdlw49kgba56zhblrf3x5vjld20frarfjjmm2"; depends=[]; };
AffyCompatible = derive { name="AffyCompatible"; version="1.26.0"; sha256="1d803lbhibwr26m392vss3zkyiczivjiwj5bkcalwlyv3bmkikyn"; depends=[Biostrings]; };
AffyExpress = derive { name="AffyExpress"; version="1.32.0"; sha256="1zmrqrh0dzzgprxh8gibj3dxdkh6ga6m3dlb8jvxyi9p6bwvdihq"; depends=[affy limma]; };
AffyRNADegradation = derive { name="AffyRNADegradation"; version="1.12.0"; sha256="1wpgfnrajwhq850ibrkwiy1k2lvf1g4zfc35z1kwksh0fbx50s3d"; depends=[affy]; };
AffyTiling = derive { name="AffyTiling"; version="1.24.0"; sha256="0rv1rg573qnwf1vfiklgm8dprr5gnfqccg06dvz5fddr1myjg53b"; depends=[affxparser affy preprocessCore]; };
AgiMicroRna = derive { name="AgiMicroRna"; version="2.16.0"; sha256="1ziw9yvj2zn6ymqc3mihy55nl51r0jss3x2raspfpnzn9fv4lnph"; depends=[Biobase limma affy preprocessCore affycoretools Biobase]; };
AllelicImbalance = derive { name="AllelicImbalance"; version="1.4.2"; sha256="1idxgilwlxf26991rilnggrm0qbvajmm4w6ssfljrddnlcqpnnkh"; depends=[GenomicRanges GenomicAlignments BiocGenerics AnnotationDbi Biostrings S4Vectors IRanges Rsamtools GenomicFeatures Gviz GenomeInfoDb]; };
AnnotationDbi = derive { name="AnnotationDbi"; version="1.28.2"; sha256="0czhmh2bgip8ax30nk1jkb82qa68cyi7ki5fwwrv3sd05gvc8qln"; depends=[BiocGenerics Biobase GenomeInfoDb BiocGenerics Biobase S4Vectors]; };
AnnotationForge = derive { name="AnnotationForge"; version="1.8.2"; sha256="13gqf7pa44js7z64psk2p6abjvwzp28pn0lc6hgmc7bcnbnblsg8"; depends=[BiocGenerics Biobase AnnotationDbi BiocGenerics S4Vectors Biobase]; };
AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.16.0"; sha256="090m1dm37r3pdn7367akmddil1qivcjsy7ilgplqhabii0gb8dhi"; depends=[AnnotationDbi]; };
AnnotationHub = derive { name="AnnotationHub"; version="1.6.0"; sha256="1kkdxf28pl743c9yamg75kcvp0pqxvphba7q9yblfsjhq2sym2v2"; depends=[S4Vectors IRanges BiocGenerics BiocInstaller AnnotationDbi GenomicRanges interactiveDisplay]; };
ArrayExpress = derive { name="ArrayExpress"; version="1.26.0"; sha256="06746fvc2xlz42ykp9b8vzgfhz4jzyx5qp6drvl9776lpawd2qq8"; depends=[Biobase affy limma]; };
ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.16.0"; sha256="0mp9dafd5h2n8sfdadncch4inxy7gn4rsmv68fyjxr4cs52c229p"; depends=[Rsamtools Biobase BiocGenerics Biostrings DESeq GenomicRanges IRanges Rsamtools ShortRead biomaRt edgeR Rsamtools]; };
ArrayTV = derive { name="ArrayTV"; version="1.4.0"; sha256="06yf52yf3jydr187yfg52vr7krhw433wab487qj3qlq903nkvjn0"; depends=[DNAcopy oligoClasses]; };
ArrayTools = derive { name="ArrayTools"; version="1.26.0"; sha256="1sf38isnq2bv8np9skqs9iwhb7k6waf6xzzrmkrxqrbm86izvdxj"; depends=[affy Biobase affy Biobase limma]; };
AtlasRDF = derive { name="AtlasRDF"; version="1.2.0"; sha256="0cdan2739w7sbz503kqm3xyyizs4l1vi9i2a5jmxn6fb9nqgkar5"; depends=[]; };
BAC = derive { name="BAC"; version="1.26.0"; sha256="1km0d3k2qxqa0s1bf2hpic71rplh07b5y06i8qr3yj3nis23z6a2"; depends=[]; };
BADER = derive { name="BADER"; version="1.4.0"; sha256="06k2dmh9dv9ng469cp67c2ld2mv7sqgynkwn368whqvvv8drc23g"; depends=[]; };
BAGS = derive { name="BAGS"; version="2.6.0"; sha256="1553n2cslnvslcc09x8wb1jll5w24zbfpjj2fhwl1955fxhclfdm"; depends=[Biobase]; };
BCRANK = derive { name="BCRANK"; version="1.28.0"; sha256="1fwyfj619i8d32k69x5ngmc7f3j71986l762rhl6idb28krfgzb8"; depends=[Biostrings]; };
BEAT = derive { name="BEAT"; version="1.4.0"; sha256="1xqnabgbzd08f25wdvwbzi3f68ldvxbisriww9f32ysj5dhjl0mh"; depends=[GenomicRanges ShortRead Biostrings BSgenome]; };
BGmix = derive { name="BGmix"; version="1.26.0"; sha256="1fc9dh23i1lab5b10z1xz6hb5ilgpif5ifg32qyppxz971cxrb2j"; depends=[]; };
BHC = derive { name="BHC"; version="1.18.0"; sha256="16i2di8d71as8jh4lm185405xmc3kkmsmlrwkqr0rj59vlgghn46"; depends=[]; };
BRAIN = derive { name="BRAIN"; version="1.12.0"; sha256="0284ww8gxzgvq6c1pkzr4lsrw6gv94ghl9myp4pihfgj26g4qcdm"; depends=[Biostrings]; };
BSgenome = derive { name="BSgenome"; version="1.34.1"; sha256="099jwllff6gkzs34jhhrnjljjm7wv2jdh1y01318pifgcrym5sw0"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings rtracklayer BiocGenerics S4Vectors IRanges XVector GenomeInfoDb GenomicRanges Biostrings Rsamtools rtracklayer]; };
BUS = derive { name="BUS"; version="1.22.0"; sha256="0l3rhvja8k8yawc2wz3xdk6m8ccvx024i2ckpwiimslnpb5qai3m"; depends=[minet]; };
BaseSpaceR = derive { name="BaseSpaceR"; version="1.10.0"; sha256="0gsrs9aan1802hv8db5x1mfaawayrcw8zvdcf3ly7z9cavf1nyfs"; depends=[]; };
Basic4Cseq = derive { name="Basic4Cseq"; version="1.2.0"; sha256="0kpsvrwl1mphdraww8ha586a57j1iqz1dk7ms5x9rsddjkl7vqa6"; depends=[Biostrings ShortRead GenomicRanges]; };
BayesPeak = derive { name="BayesPeak"; version="1.18.2"; sha256="16ndpxlwgpzhh7c9kmv2pvlan0ida1zzcflzvnq7sggynfghff2j"; depends=[IRanges IRanges]; };
BeadDataPackR = derive { name="BeadDataPackR"; version="1.18.0"; sha256="0z7s1v2xac3k52d1cyir8h99yf3h494s104z9slvd679kn7r1288"; depends=[]; };
BiGGR = derive { name="BiGGR"; version="1.2.0"; sha256="18brc57np4074fckcv3h1ik6zaw18r82c8z7kmna4f66396i6v1g"; depends=[rsbml hyperdraw hypergraph]; };
BiRewire = derive { name="BiRewire"; version="1.8.0"; sha256="1bdilpbz0z1ppbg5729f0wi8xvr0j96q9q1mdqs7agnfc82yiwhq"; depends=[]; };
BiSeq = derive { name="BiSeq"; version="1.6.0"; sha256="0rsf9kii79qjzabahpvbmmkyxc0605z325pkkdzrp3062fwafhm9"; depends=[S4Vectors IRanges GenomicRanges BiocGenerics Biobase S4Vectors IRanges GenomicRanges rtracklayer globaltest]; };
BicARE = derive { name="BicARE"; version="1.24.0"; sha256="0945kwimcbb7asp1jsadl97glyw26a0wqrymb8qb1zn5r6scplbv"; depends=[Biobase multtest GSEABase]; };
BioMVCClass = derive { name="BioMVCClass"; version="1.34.0"; sha256="0yzpwynxyxqfjhggkq1jmfc86bxzfnzy4pc7b78q6flkkz025d0h"; depends=[MVCClass Biobase graph Rgraphviz]; };
BioNet = derive { name="BioNet"; version="1.26.1"; sha256="0cwgjddx9zdbfwjcsx7qlzi2yw8jgi6xl69y1i87b00smi0dj0in"; depends=[Biobase graph RBGL AnnotationDbi]; };
BioSeqClass = derive { name="BioSeqClass"; version="1.24.0"; sha256="13ry3kwlkpk5gr6rjkhip1hhd6b6b02v9hw30wz9qcwfai8fxklv"; depends=[Biostrings Biobase]; };
Biobase = derive { name="Biobase"; version="2.26.0"; sha256="170vaqkpb2ycmydxh8kl0g7f0wmy5kks43sx4adrcbbnawza50f4"; depends=[BiocGenerics]; };
BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.28.0"; sha256="01xlfl5klhiwnn8cmp8jqrsr54c4d9s54flf8rjr5vb6n0gnfnwy"; depends=[Biobase]; };
BiocCheck = derive { name="BiocCheck"; version="1.2.3"; sha256="0blcll935flkn9019mxzg0g1146z3h6lqy52kwq53alwqbqllxw0"; depends=[biocViews BiocInstaller graph]; };
BiocGenerics = derive { name="BiocGenerics"; version="0.12.1"; sha256="0xszm3ppkw1mi509bz0vdnlabw3jp83s4lnjdpxbb9s65k3z4lfl"; depends=[]; };
BiocInstaller = derive { name="BiocInstaller"; version="1.16.5"; sha256="1s9qvvr4cgxysvz1rr9bnnalmcc4jhbabfl3j7zcx77pdh14wkqb"; depends=[]; };
BiocParallel = derive { name="BiocParallel"; version="1.0.3"; sha256="07zpmdy2yrk4rn20jjak2vdgab80xwlx98rw1zxglyk3hn17r71k"; depends=[BiocGenerics]; };
BiocStyle = derive { name="BiocStyle"; version="1.4.1"; sha256="0s4518fd29ym9ql0pj9p5grym0ykddc85yp9rkpip9g3i9cy9izp"; depends=[]; };
Biostrings = derive { name="Biostrings"; version="2.34.1"; sha256="1kfh3gabgfxnksadxd31qxv46j59l0gmfnxj197gmfhxxgwgh2mh"; depends=[BiocGenerics S4Vectors IRanges XVector BiocGenerics IRanges XVector zlibbioc S4Vectors IRanges XVector]; };
BitSeq = derive { name="BitSeq"; version="1.10.0"; sha256="1g5znh2hyvc6ywzhqdr2f2wl81842wy9xsndmx7xswy6vkvalyc4"; depends=[Rsamtools zlibbioc S4Vectors IRanges Rsamtools zlibbioc]; };
BrainStars = derive { name="BrainStars"; version="1.10.0"; sha256="17jb1n0ndh05gvwh0sjcqmn17i54p9q1g3520zhpqp7d2wz8diyi"; depends=[Biobase Biobase]; };
BridgeDbR = derive { name="BridgeDbR"; version="1.0.0"; sha256="1m3gq4hssvaazgv966lwv0fh4b8hsxxipbfzmf6jrwlwkz1snvc0"; depends=[]; };
BufferedMatrix = derive { name="BufferedMatrix"; version="1.30.0"; sha256="1c8asd6k9wkpdkmy5pgicr86kgp2y830w3zmha47jjsrni71fm2v"; depends=[]; };
BufferedMatrixMethods = derive { name="BufferedMatrixMethods"; version="1.30.0"; sha256="0aih4b3is6qhb5ac3s2mmcmvmbscb3cv5kpgp7cn5zzsd6gqan34"; depends=[BufferedMatrix BufferedMatrix]; };
CAFE = derive { name="CAFE"; version="1.2.0"; sha256="0h3gy904dgjggk84cjmx8k8x9482fx5cvvy8hcc39z97p39ar5wn"; depends=[biovizBase GenomicRanges IRanges ggbio affy annotate Biobase]; };
CAGEr = derive { name="CAGEr"; version="1.10.3"; sha256="0dja1xszwy8nmn6id7yjh13x7myl36104y4kb4qs5fdc955ir93a"; depends=[BSgenome Rsamtools GenomicRanges IRanges rtracklayer]; };
CALIB = derive { name="CALIB"; version="1.32.0"; sha256="17hm37xklsmizmwyaak3i657ly60afpl01zhrvd5jcp1z8p315rj"; depends=[limma limma]; };
CAMERA = derive { name="CAMERA"; version="1.22.0"; sha256="17yv2q67xcdmnwlxd5yd3z3gq4rksbazzjk44g6caz8k1scl5yj6"; depends=[Biobase xcms xcms RBGL graph]; };
CFAssay = derive { name="CFAssay"; version="1.0.0"; sha256="1j1x06fn516454d6drfmmznazifbpxnkna1j2q64lcjc0rlrwl6y"; depends=[]; };
CGEN = derive { name="CGEN"; version="3.0.1"; sha256="1w06wk31wycbvs4xmb5qxxv2frprfa7rlxv5g3h0pbpi79w1s6f7"; depends=[]; };
CGHbase = derive { name="CGHbase"; version="1.26.0"; sha256="16i8x78wmph5pi9bbijcblnrmq9d89y9wp44xisq12bd4n4f6a7r"; depends=[Biobase marray]; };
CGHcall = derive { name="CGHcall"; version="2.28.0"; sha256="0v11d5y6l520jvrp3srbwwcl8llw5wf8yc2kmld5rznxbmbca70j"; depends=[impute DNAcopy Biobase CGHbase]; };
CGHnormaliter = derive { name="CGHnormaliter"; version="1.20.0"; sha256="1dkqp42a3nb7pxn15s893n0qh8jjw7scnhxh15ddjq04wa4wcprw"; depends=[CGHcall CGHbase Biobase CGHbase CGHcall]; };
CGHregions = derive { name="CGHregions"; version="1.24.0"; sha256="0c4df9sn1yx3zw0jpccxbbhnk9466zy2alkmrm3sk1cnfy867263"; depends=[Biobase CGHbase]; };
CMA = derive { name="CMA"; version="1.24.0"; sha256="02c243b50zg3n1qz526zv66zff75iw58n27dvxp0cxxb8nnibdxk"; depends=[Biobase]; };
CNAnorm = derive { name="CNAnorm"; version="1.12.0"; sha256="0fvgrk37g8k940fxhbwi3m5l3vm4dpiswlyac8jgkhzdab8zkigd"; depends=[DNAcopy]; };
CNEr = derive { name="CNEr"; version="1.2.0"; sha256="1zsgpdx1jy32cgpd7sdgdn5j5jcl8rnhbaz084p426if6irb8q8c"; depends=[Biostrings GenomeInfoDb GenomicRanges rtracklayer XVector GenomicAlignments S4Vectors IRanges S4Vectors IRanges XVector]; };
CNORdt = derive { name="CNORdt"; version="1.8.0"; sha256="0sx1d94z09d3r409v7dykli3fj0j37j1cslm7mdhh0bp9bi1fzfz"; depends=[CellNOptR]; };
CNORfeeder = derive { name="CNORfeeder"; version="1.6.0"; sha256="1yzypx0pkyga4qhi11ngr2riq4rbj35lw5hy3pv82a5bwfi2vwxk"; depends=[CellNOptR graph]; };
CNORfuzzy = derive { name="CNORfuzzy"; version="1.8.0"; sha256="0srg848n3cf10sp8v9cclrxpfn1zhjlb7n1ix2v0q9p3darsw15f"; depends=[CellNOptR]; };
CNORode = derive { name="CNORode"; version="1.8.1"; sha256="1dhdcsqw73c3a7jm7341zf91xb08f40fjy38qppjyfyjfaibyxj4"; depends=[CellNOptR]; };
CNTools = derive { name="CNTools"; version="1.22.0"; sha256="0hjd1qldnxsfwlc28g522lqf4ain9ad2pk03dhhnz046sddibv76"; depends=[genefilter]; };
CNVrd2 = derive { name="CNVrd2"; version="1.4.0"; sha256="0m7632gq9j5y1vc5w2scbsrwga9n3cl8mvp8z4lw3j81qmilsc1c"; depends=[VariantAnnotation DNAcopy IRanges Rsamtools]; };
CNVtools = derive { name="CNVtools"; version="1.60.0"; sha256="17igkk3c2vb66yvsq4x9aanxwp977jzagxx8q0wgphdgv4sggbvb"; depends=[]; };
COHCAP = derive { name="COHCAP"; version="1.4.0"; sha256="1fv3zrp3d4lk7qd7wn52i54z89v7ldsakzy7jhdj6adyf1cm6rgf"; depends=[]; };
COMPASS = derive { name="COMPASS"; version="1.4.0"; sha256="0gp77dfwgdvy7p9sr80ylpynfjq0yyrp20lzzp07sygvaaygs2aq"; depends=[]; };
COPDSexualDimorphism = derive { name="COPDSexualDimorphism"; version="1.2.0"; sha256="02lsl2965ixhy1707qkhmc8rcdpq1qpyvbv09j4hkg20ymsrh4b8"; depends=[limma GenomicRanges]; };
CORREP = derive { name="CORREP"; version="1.32.0"; sha256="0g2w9hzmdiwlal49x7cx1zvy8f5b52dc91xwqh61sh9sfn454423"; depends=[]; };
COSNet = derive { name="COSNet"; version="1.0.0"; sha256="1d08y0mpvgpvwr08yjjh4v0phankm6b55m66m61qbb1xb0ix1rnz"; depends=[]; };
CRISPRseek = derive { name="CRISPRseek"; version="1.4.2"; sha256="1x4wgvlqighycadr8rf70pvdk0fpnix78zkfqqbnvmw6sb0r28dk"; depends=[BiocGenerics Biostrings BSgenome]; };
CRImage = derive { name="CRImage"; version="1.14.0"; sha256="118m3157izfjm5i2kail3cphys0cm1xnm7lj3s8j8k1wilq7y7fz"; depends=[EBImage DNAcopy aCGH]; };
CSAR = derive { name="CSAR"; version="1.18.0"; sha256="1kzry6ixb6fr5468y8mi31m1anw42nk6xx844xyiavwd61547kx0"; depends=[S4Vectors IRanges GenomeInfoDb GenomicRanges]; };
CSSP = derive { name="CSSP"; version="1.5.1"; sha256="06n5jhk1yr4ihb3hc888fyzr803hzjig4xzkdqq67m1rfnv51w3r"; depends=[]; };
CancerMutationAnalysis = derive { name="CancerMutationAnalysis"; version="1.10.0"; sha256="0azqwgy95nqfs1i8biwfn8dbqmmdhqcw4r2f91q9njfrbnrgsgpy"; depends=[qvalue AnnotationDbi limma]; };
Category = derive { name="Category"; version="2.32.0"; sha256="1cyphjvymyg530qkrjmxib63k5a1dd2wv8irj56ygifv8rzfib13"; depends=[BiocGenerics AnnotationDbi Biobase BiocGenerics graph Biobase AnnotationDbi RBGL GSEABase genefilter annotate]; };
CellNOptR = derive { name="CellNOptR"; version="1.12.0"; sha256="1wfd0xavib58mnv6bnrsaznvmq370i7lnd565n7sk5cy09fwvnlh"; depends=[RBGL graph Rgraphviz]; };
CexoR = derive { name="CexoR"; version="1.4.0"; sha256="1mp2xx2bjscirc9w54ix7ha20ysmhm0p51d7281fr3mibd5p2zny"; depends=[S4Vectors IRanges Rsamtools GenomeInfoDb GenomicRanges rtracklayer]; };
ChAMP = derive { name="ChAMP"; version="1.4.1"; sha256="136al7yx68gnw43rsglwndhvbjvl139zvj27hjrmzn0h24d1sx73"; depends=[minfi sva limma DNAcopy preprocessCore impute marray wateRmelon]; };
ChIPQC = derive { name="ChIPQC"; version="1.2.2"; sha256="07jgq5056c23lxi974pgg41nr93hhxz8ia8cbz9i9zn0jqwrrr0k"; depends=[DiffBind GenomicRanges BiocGenerics S4Vectors IRanges Rsamtools GenomicAlignments chipseq BiocParallel Biobase]; };
ChIPXpress = derive { name="ChIPXpress"; version="1.8.0"; sha256="17qdklr99vxx9npa03svslysisfraxx5z3s8cd0zgjg4b00q2bdb"; depends=[Biobase GEOquery frma affy]; };
ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="2.16.4"; sha256="1321agyc1z14dqm9fjqbjbrbla0ykziqjx4k4v2smxp75xsxn3dk"; depends=[biomaRt IRanges Biostrings BiocGenerics BSgenome GenomicFeatures AnnotationDbi limma multtest]; };
ChIPseeker = derive { name="ChIPseeker"; version="1.2.6"; sha256="07hgig4x64cnlq297zr6vcawvhrbj47qc26fqp14nl080w11rf9s"; depends=[BiocGenerics AnnotationDbi IRanges GenomeInfoDb GenomicRanges GenomicFeatures rtracklayer S4Vectors]; };
ChIPseqR = derive { name="ChIPseqR"; version="1.20.0"; sha256="0fbcwv59mhmkqrfa3f3drfwwygkdbbxmxf3pf7v4d633qziwi6fb"; depends=[BiocGenerics S4Vectors ShortRead Biostrings GenomicRanges HilbertVis IRanges ShortRead]; };
ChIPsim = derive { name="ChIPsim"; version="1.20.0"; sha256="1iw8r5qc3bjhldxa553yp5y4gv3g6x5lfwr4hbd4waydas01ncjf"; depends=[Biostrings IRanges XVector Biostrings ShortRead]; };
ChemmineOB = derive { name="ChemmineOB"; version="1.4.1"; sha256="0yygn5p0dwj3zfdmipkqlpm1w9kd8i4pdb17xwcwaz5k7z1v4jzr"; depends=[BiocGenerics zlibbioc]; };
ChemmineR = derive { name="ChemmineR"; version="2.18.1"; sha256="09vrv0bxmhhh40n4lpwmfk6imwbsxp2aanla3b3l9zia0w6r1h7k"; depends=[BiocGenerics]; };
ChromHeatMap = derive { name="ChromHeatMap"; version="1.20.0"; sha256="0a66gh4xkw4f8xnh1ak1masy9k94dvnz3h5wfd06p8yx0pfycyrm"; depends=[BiocGenerics annotate AnnotationDbi Biobase IRanges rtracklayer]; };
ClassifyR = derive { name="ClassifyR"; version="1.0.18"; sha256="1l5pqfqsjny1caxdglfi5qn85r0m52mr7ks9m98rkqgk10d1nclk"; depends=[Biobase BiocParallel]; };
Clomial = derive { name="Clomial"; version="1.2.0"; sha256="0gfb3v9fvvf96qr1x3d59icsmx7mhns71fbz62bc3dr2434msa5p"; depends=[]; };
Clonality = derive { name="Clonality"; version="1.14.0"; sha256="1vk0cn197xp64wdl7ff9xrac5x4rgx6b759a22jaaxc13vl38807"; depends=[DNAcopy DNAcopy]; };
CoCiteStats = derive { name="CoCiteStats"; version="1.38.0"; sha256="1l7hvz1054yd43ix67vqkyfxirnpy073xphqll9lyjqdk1zkaxy0"; depends=[AnnotationDbi]; };
CoGAPS = derive { name="CoGAPS"; version="2.0.0"; sha256="0hqrqf3sajf9fnwpas4hd0a6zdr2w882j9n8iwxylcas4iq9p0ya"; depends=[]; };
CoRegNet = derive { name="CoRegNet"; version="1.1.7"; sha256="0dmm3qy8c0p7yjnhad0gi6vv08l3fw29zwy2sydrxf1x43wjjn3g"; depends=[]; };
CompGO = derive { name="CompGO"; version="1.2.0"; sha256="1y21ha0dxg4gnwdkpsx051p9i3dsgp65yzzzbs3qzkrqf7qldccr"; depends=[RDAVIDWebService rtracklayer Rgraphviz GenomicFeatures pcaMethods pathview]; };
ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.20.0"; sha256="14ga3qamsj0h871k79nzmfq0462vir501d2pngs8fj0rh699n552"; depends=[Biobase]; };
CopyNumber450k = derive { name="CopyNumber450k"; version="1.2.0"; sha256="181cydyzq9dym0jz6arn9nqgnzdp4gfhy51d27fw55zwnrhxlwv7"; depends=[Biobase minfi DNAcopy preprocessCore BiocGenerics]; };
CorMut = derive { name="CorMut"; version="1.8.0"; sha256="1i7r4dwvs927dv1n3wa89wizjwj6pibsgry1zzhdifchi6gkyva8"; depends=[]; };
Cormotif = derive { name="Cormotif"; version="1.12.0"; sha256="0xmac8m4i2x9d3gd1scxawiz6y8fqg92irs8j3ni81cijn9gbaxl"; depends=[affy limma affy]; };
CoverageView = derive { name="CoverageView"; version="1.2.0"; sha256="09scvmd78cck922m3n8lvmgim2k8i376b5n2cwp0fmifwzwaxiqx"; depends=[Rsamtools rtracklayer IRanges GenomicRanges GenomicAlignments]; };
DART = derive { name="DART"; version="1.12.0"; sha256="0nq43b2lld40720139wjx9pkmjdbkiwmcgaakdd7k3i0vqpriarw"; depends=[]; };
DASiR = derive { name="DASiR"; version="1.6.0"; sha256="0k19nlw4wf1fiwgnm3l2y6mmmwqigh62nd2iqjchj4v7g3vd134w"; depends=[IRanges GenomicRanges Biostrings]; };
DAVIDQuery = derive { name="DAVIDQuery"; version="1.26.0"; sha256="1ms5gqx2rf8k4cdwbjdfhyymdr59fyz6xmykgp398scl6kmgys6f"; depends=[]; };
DBChIP = derive { name="DBChIP"; version="1.10.0"; sha256="0d36sqwzrcpm9i24f7qc8lbkgxcrhilx2ic8czhp3lk81p5wa9qn"; depends=[edgeR DESeq]; };
DECIPHER = derive { name="DECIPHER"; version="1.12.0"; sha256="0fxgzwyx8z3xygkvw6divadymxgfanmm1clcxzr6j3inicqmcd9k"; depends=[Biostrings S4Vectors IRanges XVector Biostrings S4Vectors IRanges XVector]; };
DEDS = derive { name="DEDS"; version="1.40.0"; sha256="1lzkcj2nil2d4aqwzi25s9y46p5rs2hs7is98iqphq49vw1xqxv5"; depends=[]; };
DEGraph = derive { name="DEGraph"; version="1.18.0"; sha256="02f3wq0lpv6mwl1xbhggywwldf8ib34vll2fdgcyyxnw2y3z534y"; depends=[graph KEGGgraph RBGL Rgraphviz NCIgraph]; };
DEGreport = derive { name="DEGreport"; version="1.0.0"; sha256="1fki0qc7ln3ivcwkb3ra4hf8xwvfpbrlarzqy8yf2rxw9bi6fi9d"; depends=[edgeR]; };
DEGseq = derive { name="DEGseq"; version="1.20.0"; sha256="0ndb1kdbhjab6c2q44rc171877g3xqcq3zs1n789b7y55m95qpdc"; depends=[qvalue]; };
DESeq = derive { name="DESeq"; version="1.18.0"; sha256="10q9ag2na6pxrxzh01y1j9sp3vw8h769lr986n35mmxxq40n50nc"; depends=[BiocGenerics Biobase genefilter geneplotter]; };
DESeq2 = derive { name="DESeq2"; version="1.6.3"; sha256="1mc2ciyps16vsg3h7cxcl49k7n4rgbmal8qb3bqwa12jj5nnjpi0"; depends=[S4Vectors IRanges GenomicRanges BiocGenerics Biobase BiocParallel genefilter geneplotter]; };
DEXSeq = derive { name="DEXSeq"; version="1.12.2"; sha256="0c2avg8likbs7mv6q7srwgf7qjlc2vk0qr0jbq97z0vjnb3h68fm"; depends=[Biobase GenomicRanges IRanges DESeq2 BiocParallel BiocGenerics biomaRt Rsamtools geneplotter genefilter]; };
DFP = derive { name="DFP"; version="1.24.0"; sha256="1v0bvrjmzyxn1jc3fp1fzxa2pyxxmchb74vcq63j2gpnb2w35p52"; depends=[Biobase]; };
DMRcate = derive { name="DMRcate"; version="1.2.0"; sha256="1klpsiwl2srip3dwlvdry1kjn5cpx6mmhakxrz0k7z07dy1c60zk"; depends=[limma minfi]; };
DMRforPairs = derive { name="DMRforPairs"; version="1.2.0"; sha256="1asmwfph7aw8a8s9aj5pgzqdkfh9lnd5kv3y21jjm7vcmd5snd4h"; depends=[Gviz GenomicRanges]; };
DNAcopy = derive { name="DNAcopy"; version="1.40.0"; sha256="109dwb43f7hxzkyygirabrnm3nd7ibzk228k1mvlpz55n7w8v98y"; depends=[]; };
DNaseR = derive { name="DNaseR"; version="1.4.0"; sha256="189g6ww5361i0jzicb4qnvjdbrw3n9wgw749awmr1ai6igp7mg9g"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Rsamtools]; };
DOQTL = derive { name="DOQTL"; version="1.0.0"; sha256="12sxw204hxw59pcxgilhz9x5k0wqpn1cyds1ih6bf9497da3vbab"; depends=[annotate annotationTools biomaRt Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
DOSE = derive { name="DOSE"; version="2.4.0"; sha256="0swyzrx1aapnqszzwavl0insw6ml8hrvscvqmpwr72cssclq0p3d"; depends=[qvalue AnnotationDbi GOSemSim]; };
DSS = derive { name="DSS"; version="2.4.1"; sha256="0lm8miyzg2cyc1p18qvv6g63wmk7d25q6igsk8p8p663y7jkm43s"; depends=[Biobase bsseq edgeR]; };
DTA = derive { name="DTA"; version="2.12.1"; sha256="0rbwx2853388fvshrf8sz48ilcdrs4062isavaq5dwvma484jrdk"; depends=[]; };
DeconRNASeq = derive { name="DeconRNASeq"; version="1.8.0"; sha256="0bk8q1dp0hnrkcymgimbymlz3v7s5bgzx59m51rcypypyhdnc3gi"; depends=[pcaMethods]; };
DiffBind = derive { name="DiffBind"; version="1.12.3"; sha256="0rm1jgzrw5ik0pxryf7vrq715d0gvxfiid1amf9wk2s4vqxj2shj"; depends=[GenomicRanges limma GenomicAlignments edgeR IRanges zlibbioc S4Vectors Rsamtools]; };
DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.8.0"; sha256="10hip99fxyl9pb2kp810j5cr59i2xmn1x60ansgjdr0xcbp0791w"; depends=[S4Vectors IRanges]; };
DriverNet = derive { name="DriverNet"; version="1.6.0"; sha256="00rccsf3zvyghx9a1gjs9smd5cf927rwx1fghnq5a9kkwg21sp5m"; depends=[]; };
DrugVsDisease = derive { name="DrugVsDisease"; version="2.6.0"; sha256="1b5214gknp4dsgg1gc229kln89nlvddx2d202jaiqdgw9j0gyn4s"; depends=[affy limma biomaRt ArrayExpress GEOquery qvalue annotate BiocGenerics]; };
DupChecker = derive { name="DupChecker"; version="1.4.0"; sha256="0k5yyi3hnz08x5fy7vhp0glhcjdp2mlgkvqmqw78w12af0pynpjf"; depends=[]; };
DynDoc = derive { name="DynDoc"; version="1.44.0"; sha256="14vx87r20ccf08wx3a42rg2dg0ydbprwxsk24j5bmjxqkm45pmxc"; depends=[]; };
EBImage = derive { name="EBImage"; version="4.8.3"; sha256="1lzbn2i8ikqghp5jnb3a0k2in3b9f4ck4imlk6l6ddi6szprmrrs"; depends=[BiocGenerics]; };
EBSeq = derive { name="EBSeq"; version="1.6.0"; sha256="0k6azzbyxxaqblv326i0ykm414qhwsrr69k1l3dfbwvrh17giamv"; depends=[]; };
EBSeqHMM = derive { name="EBSeqHMM"; version="1.0.0"; sha256="13nfj4ka0plli2yd69jmvy1qsqcprn0xbzqmr264v15msl94vqyx"; depends=[EBSeq]; };
EBarrays = derive { name="EBarrays"; version="2.30.0"; sha256="1v32rzzx9brv3c0kl7zmxa09ah954nd1rynljm2l21h0swlrrr64"; depends=[Biobase Biobase]; };
EBcoexpress = derive { name="EBcoexpress"; version="1.10.0"; sha256="0w684g7v2r55br4n9lb9r0sdm9p0z7v4cb38fy7nin8rcipkqh0r"; depends=[EBarrays]; };
EDASeq = derive { name="EDASeq"; version="2.0.0"; sha256="1q0n1p7ba6kp7gq1fhvjg0bdwb34dxn0xvxqajh36xx34f1ksiv6"; depends=[Biobase ShortRead BiocGenerics IRanges DESeq aroma_light Rsamtools]; };
EDDA = derive { name="EDDA"; version="1.5.3"; sha256="0syhwhqbpvazy6vnpkjx99m752fwdzkaqyq98kwx4pjikpw6j2zr"; depends=[DESeq baySeq edgeR DESeq baySeq edgeR]; };
ELBOW = derive { name="ELBOW"; version="1.2.0"; sha256="0k2iaa5v2pr2h6vfa5r7lrqkvxsaq6hf4zi2si4n2qivm29s3hby"; depends=[]; };
ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.14.0"; sha256="1xhcvmw9px4kyg3p7wc08jrin0qkw7xi20jjy34fd6almnmk7mfd"; depends=[]; };
EasyqpcR = derive { name="EasyqpcR"; version="1.8.0"; sha256="0ql9mj94yb0cpk0gwnhrlsc0xr6i7psral26vgp7zrzx5iw6zg9d"; depends=[]; };
EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.0.3"; sha256="03jq5w9hlgcc7yl2305jw6hlnrlpwg6mg131zya1cxzxrs12gv8b"; depends=[Biobase KEGGgraph KEGGREST Rgraphviz SPIA graph limma neaGUI qvalue safe]; };
ExiMiR = derive { name="ExiMiR"; version="2.8.0"; sha256="19ghy4l1zcz3jfrcdzmlpwml2if618j2i5b0m8iw7ww7n1mapmvw"; depends=[Biobase affy limma affyio Biobase preprocessCore]; };
ExpressionView = derive { name="ExpressionView"; version="1.18.0"; sha256="1kw2gdflfnqs4pkyjk1qjxdk1xafl7qx4vwjb7fd1c26wk28b6xh"; depends=[eisa AnnotationDbi eisa AnnotationDbi]; };
FEM = derive { name="FEM"; version="1.0.0"; sha256="019iw3rgzym59332pw941lw8n7hnk9arc237d3y1ayrwgxh73b3r"; depends=[marray impute limma graph BiocGenerics]; };
FGNet = derive { name="FGNet"; version="3.0.7"; sha256="05kxjizcimfyjcjqpzgxlnj5lssbiq05bq5q64h7xxyyia3913n8"; depends=[]; };
FRGEpistasis = derive { name="FRGEpistasis"; version="1.2.0"; sha256="00d1q06rkvbblajiqjyv87vsa3g1mzg4km2z0548g503k961cp8d"; depends=[]; };
FourCSeq = derive { name="FourCSeq"; version="1.0.0"; sha256="11f340ri3s3qjqpf4vjngrz1vrpilkyg69cn09kpfs5vvh6y7wii"; depends=[GenomicRanges DESeq2 DESeq2 Biobase Biostrings GenomicRanges Rsamtools ggbio rtracklayer GenomicAlignments]; };
FunciSNP = derive { name="FunciSNP"; version="1.8.0"; sha256="0ns1c2zsdkrgzq3a6mdd057h13sgh175sbvadibz06gj22008ka6"; depends=[AnnotationDbi IRanges Rsamtools rtracklayer ChIPpeakAnno GenomicRanges VariantAnnotation snpStats]; };
GENE_E = derive { name="GENE.E"; version="1.6.0"; sha256="0g7ghg5mksaazivgb8m2faizcbpzkddh35417f8qi6hbl8a7kpja"; depends=[rhdf5 rhdf5]; };
GEOmetadb = derive { name="GEOmetadb"; version="1.26.1"; sha256="10n56xlx61j6rjzz6g3079s9jv3n0ra5l83q63qpg7g563ddihmk"; depends=[GEOquery]; };
GEOquery = derive { name="GEOquery"; version="2.32.0"; sha256="079f5c6gxms014jqyc41g174qic9ka08j9jk4jlynf7a689hf8v4"; depends=[Biobase]; };
GEOsubmission = derive { name="GEOsubmission"; version="1.18.0"; sha256="12zk2izm1gliky5lpfzs31ymnv73sal6f2vi15lppfcxklj2zsmx"; depends=[affy Biobase]; };
GEWIST = derive { name="GEWIST"; version="1.10.0"; sha256="1lh7d2fz1nnadl01iyrflpja04xzl01j1zzpsavmj5m7g8d6l525"; depends=[]; };
GGBase = derive { name="GGBase"; version="3.28.0"; sha256="05y237f0azkgv8xgl357gf7j8024hjq0padz8wv1slw6p8frsqb8"; depends=[snpStats limma genefilter Biobase BiocGenerics AnnotationDbi GenomicRanges]; };
GGtools = derive { name="GGtools"; version="5.2.0"; sha256="0ikx3xsx11pdqi1245xqsj3y0r64ry0qbvgdrvv5cjhlgf172qgw"; depends=[GGBase BiocGenerics snpStats Rsamtools AnnotationDbi Biobase VariantAnnotation rtracklayer Gviz S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings]; };
GLAD = derive { name="GLAD"; version="2.30.0"; sha256="1wlf2mxay26j9lbnizj2fbs7rhq0qpqrsxm3gzn8dabs01qhm109"; depends=[]; };
GOFunction = derive { name="GOFunction"; version="1.14.0"; sha256="1p7hfg9apyks9l8swc55x89b556fwf3g259pl4r62yf035jdiw1k"; depends=[Biobase graph Rgraphviz AnnotationDbi Biobase graph Rgraphviz AnnotationDbi]; };
GOSemSim = derive { name="GOSemSim"; version="1.24.1"; sha256="12qf8ahfchkqs0f37y0hz5yng24myr7svls6s72z9xbmcrzrzmj6"; depends=[AnnotationDbi]; };
GOSim = derive { name="GOSim"; version="1.8.0"; sha256="1kkj2mg9d4w8kzcy468drk95lvbknjsib68d1v165g0wvbm2hqxw"; depends=[annotate AnnotationDbi topGO RBGL graph]; };
GOTHiC = derive { name="GOTHiC"; version="1.2.2"; sha256="17lqkd6yi6pzd2q1jaq1fg8qy4shqrn7pj8l8lw92cib2sbhbrgs"; depends=[GenomicRanges Biostrings BSgenome BiocGenerics S4Vectors IRanges ShortRead rtracklayer]; };
GOexpress = derive { name="GOexpress"; version="1.0.1"; sha256="0yxgcpy6z5dgd3hkgcikbbq30rx682n0arqic8dns5mg6mns428p"; depends=[Biobase biomaRt]; };
GOstats = derive { name="GOstats"; version="2.32.0"; sha256="12yxqavqvxq5b53fr79czlxmnz9mwbchqcmsmgdvzqdca4kh6b0l"; depends=[Biobase Category graph AnnotationDbi Biobase Category RBGL annotate graph AnnotationForge]; };
GOsummaries = derive { name="GOsummaries"; version="2.0.0"; sha256="0gikgj4hxy9qrbyy3282x896fch5q67gdi8d2havqqrzi65mfgxa"; depends=[limma]; };
GRENITS = derive { name="GRENITS"; version="1.18.0"; sha256="1wx8y472jkvszkb0rf944mzb1dzcwqxbf8qwgzmm07s6hcwyi6xg"; depends=[]; };
GSAR = derive { name="GSAR"; version="1.0.0"; sha256="1pfm6d2av87kq17f1b7gz4fg8krvf237vdap5b6bv7n3lbh2d7p5"; depends=[]; };
GSCA = derive { name="GSCA"; version="1.4.0"; sha256="0j1n99w7d293kfrc6g96lkvi624d6v85993hfysbcx9nksajkcdw"; depends=[rhdf5]; };
GSEABase = derive { name="GSEABase"; version="1.28.0"; sha256="1g602vlaw4fxg87w8dczidij58r9fwn3ql68cd51ar5kbz9cr65s"; depends=[BiocGenerics Biobase annotate graph AnnotationDbi]; };
GSEAlm = derive { name="GSEAlm"; version="1.26.0"; sha256="12qfpwzqd09w25nqi98551vspigzmxzvvbp0bl68zbl937c971v2"; depends=[Biobase]; };
GSRI = derive { name="GSRI"; version="2.14.0"; sha256="1fsm4zrcqbm14ls3sm8wmbxzmnsn1vn64kl9kkfgijvj0jw92qzs"; depends=[genefilter Biobase GSEABase les]; };
GSReg = derive { name="GSReg"; version="1.0.0"; sha256="13yxchr44vcfzhmm69xgjhf326n0arjla5qvib3arqa0vs3b10qn"; depends=[]; };
GSVA = derive { name="GSVA"; version="1.14.1"; sha256="1i8v09yd8ikyicmdcszvinifzp44irkqrz1n58wyhhq6iz32gl87"; depends=[BiocGenerics Biobase GSEABase]; };
GWASTools = derive { name="GWASTools"; version="1.12.2"; sha256="06g3wbnr70dw7bgbiid4qcjnvvzdvc0vn3mc3i757h8sdd8ina5x"; depends=[Biobase gdsfmt DNAcopy quantsmooth]; };
GeneAnswers = derive { name="GeneAnswers"; version="2.8.0"; sha256="04hb6ja695c1jn7w47rdbz15qvl74ddq7wvkqxlbz7n670n5vqh3"; depends=[annotate Biobase Heatplus RBGL annotate]; };
GeneExpressionSignature = derive { name="GeneExpressionSignature"; version="1.12.0"; sha256="04wmgsxbv2gzp0f9bnr3zqmjhjj9ph96jjmvkjldq88ryq8zwlbm"; depends=[Biobase PGSEA]; };
GeneGA = derive { name="GeneGA"; version="1.16.0"; sha256="18l3mpvadw02gclggx7288jpaim0rkz6h9j3wy6351bj0h1ki4s6"; depends=[]; };
GeneMeta = derive { name="GeneMeta"; version="1.38.0"; sha256="18lrszvq7a18ndgn1ylgf14xaz9sck3s0f7hhfakgjmm43yg9m2j"; depends=[Biobase genefilter Biobase]; };
GeneNetworkBuilder = derive { name="GeneNetworkBuilder"; version="1.8.0"; sha256="068y7ak8w62nj3p55cs5kljzfq74m06g7nrbclqjx9jbsa3lpc12"; depends=[graph graph]; };
GeneOverlap = derive { name="GeneOverlap"; version="1.2.0"; sha256="0yjbclrb1vkpf4jckwggpp4mmq7vh5z0maqy9rswk98a5ybd25lk"; depends=[]; };
GeneRegionScan = derive { name="GeneRegionScan"; version="1.22.0"; sha256="0x50d1a7h6npkxvwsxl7dv47ww5a0w5frj833hni1j65z62v7h32"; depends=[Biobase Biostrings Biobase affxparser Biostrings]; };
GeneSelectMMD = derive { name="GeneSelectMMD"; version="2.10.0"; sha256="0n5sa8zz804qkx3rayvw23xf7g96ynavm1jrvka18vcf9jaymy96"; depends=[Biobase Biobase limma]; };
GeneSelector = derive { name="GeneSelector"; version="2.16.0"; sha256="1prkrn9fjxbklp5mck6fi310y98b79fa7nj1h1s858lcddkm53l5"; depends=[Biobase multtest siggenes limma]; };
GeneticsDesign = derive { name="GeneticsDesign"; version="1.34.0"; sha256="1ixz68hn11dn83c1dnryj9jaad6gwbnnvn2478njsl9sqca5x1hj"; depends=[]; };
GeneticsPed = derive { name="GeneticsPed"; version="1.28.0"; sha256="1qw6agvkjm9b747lbvqw24y8gflp4bhkasp2vjizjyjf8jy0br7j"; depends=[]; };
GenoView = derive { name="GenoView"; version="1.0.0"; sha256="116q5k2byizpd6fax7l0nvlh8fablnmjjphm8kjf5clzc5dqlnyz"; depends=[GenomicRanges ggbio biovizBase]; };
GenomeGraphs = derive { name="GenomeGraphs"; version="1.26.0"; sha256="0l7gx0fn29wyac0vjsw1wh5j2232ngbzyhb7ihnq8hh1krhsml4s"; depends=[biomaRt]; };
GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.2.5"; sha256="1rmxk4wyjgycdqc3f7pnyjcz7n1j8w8wkik2qcq50xka4wh2sw0k"; depends=[BiocGenerics S4Vectors IRanges BiocGenerics S4Vectors]; };
GenomicAlignments = derive { name="GenomicAlignments"; version="1.2.2"; sha256="00kk1gq6iiig9746j9h8ac2l4dvwz824pjy0hs7w5kwysq0szjxz"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings Rsamtools BiocGenerics S4Vectors IRanges GenomicRanges Biostrings Rsamtools BiocParallel S4Vectors IRanges]; };
GenomicFeatures = derive { name="GenomicFeatures"; version="1.18.7"; sha256="0rxll1qvw43gmk0x5hknlmjr3wdnjyc6s6lif60yj1qk1y66ijpx"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges AnnotationDbi Biostrings rtracklayer biomaRt Biobase]; };
GenomicFiles = derive { name="GenomicFiles"; version="1.2.1"; sha256="0jwj30ppknsgsac3750d3b7f7fp5m3g9px8ghlkvb1chw1x0lhrw"; depends=[BiocGenerics Rsamtools GenomicRanges rtracklayer BiocParallel GenomicAlignments IRanges]; };
GenomicInteractions = derive { name="GenomicInteractions"; version="1.0.3"; sha256="0hczqam6isn1rw4xn4dxzgvrg11kwzs6ysy5i3xxyzyf23yqjbwf"; depends=[Rsamtools GenomicRanges IRanges rtracklayer]; };
GenomicRanges = derive { name="GenomicRanges"; version="1.18.4"; sha256="1aaa1wqcyk7jsi4nzg6kyh3awwzi323qnj1ibg2zfqzj9lv6ixqz"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb XVector S4Vectors IRanges]; };
GenomicTuples = derive { name="GenomicTuples"; version="1.0.0"; sha256="15pwq8zsr20ygy1mwm2q3siljkj51h8cr61n8jcphd8h29xjvhjk"; depends=[GenomicRanges GenomeInfoDb BiocGenerics S4Vectors Biobase]; };
Genominator = derive { name="Genominator"; version="1.20.0"; sha256="1a9zw05asmrl848yii4bkszj2lsh6jank095g8zcp1yrncdgszi1"; depends=[BiocGenerics IRanges GenomeGraphs]; };
GlobalAncova = derive { name="GlobalAncova"; version="3.34.0"; sha256="1k8b3p1g7igqynvhq4jpvzcx739q6fk05zahrdxcipi7r58y9f61"; depends=[globaltest annotate AnnotationDbi]; };
GraphAT = derive { name="GraphAT"; version="1.38.0"; sha256="18zy8d1b5q6v6sx0gpgzbyhwf8h87c5vf4i2zagsjn6k26v12f7g"; depends=[graph graph]; };
GraphAlignment = derive { name="GraphAlignment"; version="1.30.0"; sha256="0rr4kq3r5wlh8mgn0raggdhc3j59x9k3qnzllm6khhp053gjr32f"; depends=[]; };
GraphPAC = derive { name="GraphPAC"; version="1.8.0"; sha256="0pgxnhbqq919rawcbpjdy8xd5q22rb34grbfnhq8m0lwd8an9hzr"; depends=[iPAC]; };
Gviz = derive { name="Gviz"; version="1.10.11"; sha256="0mfwb230xh77a0qkfp6207sack9g3aksw9mrpyhyk35pfzrh4k8m"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges XVector rtracklayer biomaRt AnnotationDbi Biobase GenomicFeatures BSgenome Biostrings biovizBase Rsamtools GenomicAlignments]; };
HCsnip = derive { name="HCsnip"; version="1.6.0"; sha256="0fc7fn3v2zz6p94n14wj5xamq5c49bdinkrgkm5q9rpdd55hzyah"; depends=[impute sigaR Biobase]; };
HDTD = derive { name="HDTD"; version="1.0.0"; sha256="16mgcb512q4r49a0jxa24k7cs1ivzaq0638m3xfl8qp64mhycd4n"; depends=[]; };
HELP = derive { name="HELP"; version="1.24.0"; sha256="02gwdasbkh2gwc2cr1jhsb5w1i4jwfgdrdfgi5a7c76k37wy7m09"; depends=[Biobase]; };
HEM = derive { name="HEM"; version="1.38.0"; sha256="0hmibyl9jbagr2w1lcy7vcbxbbnqh5r03ya39c0x6sanh9mswbf2"; depends=[Biobase]; };
HMMcopy = derive { name="HMMcopy"; version="1.8.0"; sha256="1wh3ha3yk79ci1amna3wcm5nmwq1dsvz6qgf72xcnx3x5d6f5v49"; depends=[IRanges geneplotter]; };
HTSFilter = derive { name="HTSFilter"; version="1.6.0"; sha256="0wmag2q92364fs36y1hjxkkvi0ng408sphra5rk728g5panqh4j6"; depends=[Biobase DESeq edgeR DESeq2 GenomicRanges IRanges]; };
HTSanalyzeR = derive { name="HTSanalyzeR"; version="2.18.0"; sha256="1gvqzcy6zv984kl29w8vwz6sajz4azk8navlk0vq47crady1x1wq"; depends=[graph GSEABase BioNet cellHTS2 AnnotationDbi biomaRt RankProd]; };
HTSeqGenie = derive { name="HTSeqGenie"; version="3.16.1"; sha256="0zciancr64d37a9akcr6hkha5f2wkb88jn0grpgs2gdji130pfa0"; depends=[gmapR ShortRead VariantAnnotation BiocGenerics IRanges GenomicRanges Rsamtools Biostrings chipseq GenomicFeatures BiocParallel rtracklayer GenomicAlignments VariantTools]; };
HTqPCR = derive { name="HTqPCR"; version="1.20.0"; sha256="0z3872svkx86jjygcsqyh7z6a5i5rhrslyn3i2hxixwhscn5kib7"; depends=[Biobase limma affy Biobase limma]; };
Harshlight = derive { name="Harshlight"; version="1.38.0"; sha256="02q2kyad3613z77sycq0w69lc8jl1a8s99a5lcpir0dviw9brhzc"; depends=[affy altcdfenvs Biobase]; };
Heatplus = derive { name="Heatplus"; version="2.12.0"; sha256="0hnf9ybrj24nr2hybh4lnxv9lxazzhkz53kd8r3xh2irwvf6mpnq"; depends=[]; };
HiTC = derive { name="HiTC"; version="1.10.0"; sha256="0brb21jh98a1518hkn7ni93qjcibfi4p2x407xrvfkbb9vdwmk5h"; depends=[IRanges GenomicRanges Biostrings rtracklayer]; };
HilbertVis = derive { name="HilbertVis"; version="1.24.0"; sha256="06qsmfy0p4m1x4w9az0cw1fh8fr59kzc6sskkzihb2kl51vbjfcz"; depends=[]; };
HilbertVisGUI = derive { name="HilbertVisGUI"; version="1.24.0"; sha256="14488b09kvap9m6xh93vrbi3d1wla1246sa0siamxvhpvsnl4gs0"; depends=[HilbertVis]; };
HybridMTest = derive { name="HybridMTest"; version="1.10.0"; sha256="0c4ikl59b7wwygj4xyvcdla3xq5jpfbyvsl9n53fdxk1f5lhr7f1"; depends=[Biobase]; };
IMPCdata = derive { name="IMPCdata"; version="1.0.0"; sha256="0ga6l0xza2cdl6i5nimqnvm804vmhb9lcn5aizzlcsn575m3nhy5"; depends=[]; };
INPower = derive { name="INPower"; version="1.2.0"; sha256="0i83nympny2pr2jvxmdhl8wiafamq4dnzpn1np50j0zkgmnjvvny"; depends=[]; };
IPPD = derive { name="IPPD"; version="1.14.0"; sha256="14yx5rwwihjwx8rpsgkkgmc3bz6pzc91pa0qq8cz1czscj5srca9"; depends=[]; };
IRanges = derive { name="IRanges"; version="2.0.1"; sha256="1f9xki5b0ypp01ns3y54b21ypi7lk6gdb2368zz6ky3hjnwgq9kc"; depends=[BiocGenerics S4Vectors S4Vectors]; };
ITALICS = derive { name="ITALICS"; version="2.26.0"; sha256="12h0c89q2f4iq3pma2z8c3kzy63mpzcxdpbj3jmsmdzlr34p2rca"; depends=[GLAD oligo affxparser affxparser GLAD oligo oligoClasses]; };
Icens = derive { name="Icens"; version="1.38.0"; sha256="02pzhwwhp7l9iv20h928df82c1h647lpdqcdxi8wsfqqayzhb27n"; depends=[]; };
IdMappingAnalysis = derive { name="IdMappingAnalysis"; version="1.10.0"; sha256="0jdx6xqwv8kx3jb391nzv2qv77qj8vjhx815fgfr09k3nlh9j46l"; depends=[Biobase]; };
IdMappingRetrieval = derive { name="IdMappingRetrieval"; version="1.12.0"; sha256="05pdmfqb7dk8bd6y09jxaazhwvds62mhbfpwc3rhsv4lzbgkjz47"; depends=[ENVISIONQuery biomaRt ENVISIONQuery DAVIDQuery AffyCompatible]; };
IdeoViz = derive { name="IdeoViz"; version="1.0.0"; sha256="1641pzxprp5izrh3vlryzwvkxaq2rv58ahb75gwi34ma6qf2v37r"; depends=[Biobase IRanges GenomicRanges rtracklayer GenomeInfoDb]; };
IsoGeneGUI = derive { name="IsoGeneGUI"; version="2.0.0"; sha256="0jprrffb88rc59ycsf3vk1jcvnprgh17cfymqaws88w0sqb5n7y7"; depends=[multtest geneplotter Biobase]; };
KCsmart = derive { name="KCsmart"; version="2.24.0"; sha256="1p248qq36csg015k0grnrgyrbzbyclvfp52p9x3fd0zcw05lqi27"; depends=[siggenes multtest BiocGenerics]; };
KEGGREST = derive { name="KEGGREST"; version="1.6.4"; sha256="1mz0yd2wa55hawmj961phmdcha8hs1q2cxg8sxadbk09k37msgcn"; depends=[Biostrings]; };
KEGGgraph = derive { name="KEGGgraph"; version="1.24.0"; sha256="15h6mphrx39rvp07qj11b4kys9wx6xlma4z350lic8b9ab3ci4wg"; depends=[graph graph]; };
KEGGprofile = derive { name="KEGGprofile"; version="1.8.2"; sha256="0wv9s0n8yby88b40l0a6v0vkgplqg6qm12ni45afs1vslfw4d28r"; depends=[AnnotationDbi KEGGREST biomaRt]; };
LBE = derive { name="LBE"; version="1.34.0"; sha256="0archkaxwiljxp6bsgkils6b66gm9wrvkd2w0nlh712qz7plp1a6"; depends=[]; };
LMGene = derive { name="LMGene"; version="2.22.0"; sha256="1vl0zyfl6vispk7cll0xfpblabmz71jj07k4csckl64x2imqz199"; depends=[Biobase multtest affy]; };
LPE = derive { name="LPE"; version="1.40.0"; sha256="181zknwrassnw0iqphqlr9bw2pnzpk05ch4almzj1pcp5l52i5sc"; depends=[]; };
LPEadj = derive { name="LPEadj"; version="1.26.0"; sha256="0pbq1a5rqwyv1s5bncrymiw1dqf0mwippmc4gn1qzjk609myis8x"; depends=[LPE LPE]; };
LVSmiRNA = derive { name="LVSmiRNA"; version="1.16.0"; sha256="0s70fkxx4ghhz2d8ammp22brs0066hq2sxwc8fhczs206fvj0x7m"; depends=[BiocGenerics Biobase limma affy vsn]; };
LiquidAssociation = derive { name="LiquidAssociation"; version="1.20.0"; sha256="0i5bbcyasykxqxsd7i0slx1dhlk9v21v74zsj99n8z6rbds0ggzc"; depends=[Biobase]; };
M3D = derive { name="M3D"; version="1.1.4"; sha256="0q8b7k40hcd0yb8c5y8wm88azvdj5w3cpmi3x4x5axjid2qx0ms3"; depends=[GenomicRanges IRanges BiSeq]; };
MAIT = derive { name="MAIT"; version="1.0.0"; sha256="10m59b0l3wsmpwmswbpnx91hf3pl69nq0b2j1iwj03qp7khx6xsk"; depends=[CAMERA xcms]; };
MANOR = derive { name="MANOR"; version="1.38.0"; sha256="18vvi17zjb034s7w73acy59fpb39kskpzkspwh0q3cggvypaccq9"; depends=[GLAD GLAD]; };
MBASED = derive { name="MBASED"; version="1.0.0"; sha256="1j0g5qlncvba7rylic4bh1hx19kddxwvjg455fkw5iigpsgny5cc"; depends=[BiocGenerics BiocParallel GenomicRanges]; };
MBAmethyl = derive { name="MBAmethyl"; version="1.0.0"; sha256="1ahxiajqafaw8p9fw8v9f7g7vcf6h6cj2mpxznc0vbv9wdz1a2l9"; depends=[]; };
MBCB = derive { name="MBCB"; version="1.20.0"; sha256="19s52g3ck475rdghcmbnk852ki3f050bcb286jz812zia1859px5"; depends=[preprocessCore]; };
MCRestimate = derive { name="MCRestimate"; version="2.22.0"; sha256="0brkdxqdh631wpa1sr5qxkj0g9g6l8b7257ayndjjj48p30nprj5"; depends=[Biobase]; };
MEDIPS = derive { name="MEDIPS"; version="1.16.0"; sha256="035jj91wh1j3qzyhi487lwr939z6f88nprs60m0w117082926l32"; depends=[BSgenome DNAcopy Biostrings BSgenome Rsamtools IRanges GenomicRanges edgeR GenomicFeatures DNAcopy biomaRt rtracklayer]; };
MEDME = derive { name="MEDME"; version="1.26.0"; sha256="0bl8g35y1z7zq8cyq3hy0npgbr015wiw0dbqwfw57n0kckmmk9vc"; depends=[Biostrings]; };
MEIGOR = derive { name="MEIGOR"; version="1.0.0"; sha256="06dc7v3j39jglpm65nc6b5jf827mz8cjd6fnmbaqdk99kcripqdg"; depends=[CNORode]; };
MGFM = derive { name="MGFM"; version="1.0.0"; sha256="0qv0851jlpn9xydgf3x0mxdhgbw50adfqqw3gf9sny83rx0vxy4z"; depends=[AnnotationDbi annotate]; };
MIMOSA = derive { name="MIMOSA"; version="1.2.0"; sha256="1lyxl39cjb58vi7pfzdsxcyw0f4llabax3866pfdalpqh1d8p9yr"; depends=[Biobase]; };
MLInterfaces = derive { name="MLInterfaces"; version="1.46.0"; sha256="0hc9z07ajda5qhsa20ddalpp1aj9j1hsy59jvam3jdby5hkklin5"; depends=[Biobase annotate genefilter]; };
MLP = derive { name="MLP"; version="1.14.0"; sha256="0n5gp4qf6x1ahzbigqjabrv8d090byv87vx7wk0al7534lm9c5g7"; depends=[AnnotationDbi affy]; };
MLSeq = derive { name="MLSeq"; version="1.2.0"; sha256="0kdrlijq4cah7jdqw3fymkv21wp32ra85vv2y71m8m111bf91cm0"; depends=[DESeq2 Biobase limma edgeR]; };
MMDiff = derive { name="MMDiff"; version="1.6.0"; sha256="0rif1y2i6s91qn6220q3avrddgicsmlsxhh8rls0ri9gsl4f16b7"; depends=[GenomicRanges DiffBind Rsamtools GenomicRanges IRanges Biobase]; };
MPFE = derive { name="MPFE"; version="1.0.0"; sha256="0lgzcdzasf50r0aj3lgbifq2yqyppbr1q9zgaahc84gg0dybcbyn"; depends=[]; };
MSGFgui = derive { name="MSGFgui"; version="1.0.2"; sha256="1qklwy9wc81la49fjj8kmwds9d6ydnkgbgb4r3lzyr8k5g4v75ik"; depends=[mzR mzID MSGFplus]; };
MSGFplus = derive { name="MSGFplus"; version="1.0.5"; sha256="0h0m0rnfr5lyaskrrmdqcv8182hi8gl7nmnqk3fs61a23rf3i8sk"; depends=[mzID]; };
MSnID = derive { name="MSnID"; version="1.0.1"; sha256="02grqlsqcgv1ricx7wyd4l72s35w1k92m80kkjm4afhx6aqv9wsf"; depends=[MSnbase mzID Biobase mzR]; };
MSnbase = derive { name="MSnbase"; version="1.14.2"; sha256="1sxkdp41qdih3vz7zakqmws33yhpsggcg30w6sl7p23lmixbkqrl"; depends=[BiocGenerics Biobase mzR BiocParallel IRanges preprocessCore vsn affy impute pcaMethods mzID]; };
MSstats = derive { name="MSstats"; version="2.4.0"; sha256="0srlcd2k1h23zj3h5g73b3rdbi2hg0mna35mvvv4l4i7k603dxsp"; depends=[MSnbase marray limma preprocessCore]; };
MVCClass = derive { name="MVCClass"; version="1.40.0"; sha256="1ix9yb97wbhi6577p2kp84c13g8rmikzbqcdc9vd6bp61f3bf484"; depends=[]; };
MantelCorr = derive { name="MantelCorr"; version="1.36.0"; sha256="1a5m54ljsfgrpbhj9n3yz67s10pspl050a5sjrkq2cvx0hyk4wwg"; depends=[]; };
MassArray = derive { name="MassArray"; version="1.18.0"; sha256="0lmyfjrak3fm2zmc0k1db4yyb38xzzichb1if3lda6v0wlq86yxn"; depends=[]; };
MassSpecWavelet = derive { name="MassSpecWavelet"; version="1.32.0"; sha256="16xfcdrsy2c68kib1yicqllzydn8l143n1zxrpzw1zrj32zwdd04"; depends=[]; };
MeSHDbi = derive { name="MeSHDbi"; version="1.2.7"; sha256="159lx1xgpyn9mj40fnfnz13qjahs18xsvsyj9crfbh5y5q8d308z"; depends=[AnnotationDbi Biobase]; };
MeasurementError_cor = derive { name="MeasurementError.cor"; version="1.38.0"; sha256="1q5y46sjd4gbb9sckhkjjj6kb4df511f9822dbibdccav9y9pfgq"; depends=[]; };
MergeMaid = derive { name="MergeMaid"; version="2.38.0"; sha256="0y3qa7hw9c74x7q1j5nmy21xp7rp5bgkgngc4yk3kkd8z8ik2kvi"; depends=[Biobase]; };
Metab = derive { name="Metab"; version="1.0.0"; sha256="0rlr1dckg07qd76cfsdyjna0phjcbcqsqdbbciyv774cb7fhca0j"; depends=[xcms]; };
MethylAid = derive { name="MethylAid"; version="1.0.2"; sha256="0rsv93k3j61q237sh65b69k3d81abd7zq7nxvklwkyyhyyp25p7c"; depends=[BiocParallel minfi]; };
MethylMix = derive { name="MethylMix"; version="1.0.0"; sha256="0yqgsh7y6qxlvq3d7j8ywdxflmrr2p6pfdlgblmfydcg64hv3c49"; depends=[]; };
MethylSeekR = derive { name="MethylSeekR"; version="1.6.0"; sha256="1dlrnmraslmr51zvfdbssizgc7h4kldb480vvaak3kzqs3k1lsfv"; depends=[rtracklayer IRanges BSgenome GenomicRanges geneplotter]; };
Mfuzz = derive { name="Mfuzz"; version="2.26.0"; sha256="1x1jz0x6l38ssil5zassxa6dvm4m4fq904vdhjnivqhl2akcabvh"; depends=[Biobase tkWidgets]; };
MiChip = derive { name="MiChip"; version="1.20.0"; sha256="17cjxg487fhb2fv3cj9fkswbdv9fflnj530kksxckmx759pzv5xb"; depends=[Biobase Biobase]; };
MiPP = derive { name="MiPP"; version="1.38.0"; sha256="1m3c6x412hzhkf1i8w708qj099ag9sikvsdll1n9gp174asg5idn"; depends=[Biobase]; };
MiRaGE = derive { name="MiRaGE"; version="1.8.0"; sha256="1kcjlja6bmgkwx8l1mywf3n36a9gwx04gzppb3x89hrkrhip95m9"; depends=[Biobase AnnotationDbi BiocGenerics]; };
MineICA = derive { name="MineICA"; version="1.6.0"; sha256="08qy899p44j4kgrwllyvqp6wd1z1gzq9krm46n2i84kdkz5vqy1i"; depends=[Biobase biomaRt GOstats marray Rgraphviz graph annotate AnnotationDbi lumi]; };
MinimumDistance = derive { name="MinimumDistance"; version="1.10.2"; sha256="1c8skic7m2hiyccbg2iclrlgq8h3ra3d23j9b4iliwhpjqip1y8j"; depends=[oligoClasses S4Vectors VanillaICE Biobase DNAcopy BiocGenerics IRanges GenomicRanges GenomeInfoDb]; };
Mirsynergy = derive { name="Mirsynergy"; version="1.2.0"; sha256="00y510f0c4w9cmaymm5l59j0yjiv9jwcv5ihds83c5x2hpivzv84"; depends=[]; };
MmPalateMiRNA = derive { name="MmPalateMiRNA"; version="1.16.0"; sha256="0jg925daxwhr99dxp841w5z20cgpc185n0w1n8nnjwpyah950v83"; depends=[Biobase limma vsn limma Biobase]; };
MoPS = derive { name="MoPS"; version="1.0.0"; sha256="18bxh9jwdm85nb3v4sn8k55fl8hv79h80f3dy0d10vfpwjf9aabi"; depends=[Biobase]; };
MotIV = derive { name="MotIV"; version="1.22.0"; sha256="154k9y42r42mfbiz3pqc80789d19d9fchrdcij71hxz0r0jr1mji"; depends=[BiocGenerics IRanges Biostrings rGADEM]; };
MotifDb = derive { name="MotifDb"; version="1.8.0"; sha256="0yxvv4mz4bj6iyn8whzkn59gbb0cm8nik9l8076jwa2nhmgwnkzd"; depends=[BiocGenerics S4Vectors IRanges Biostrings rtracklayer]; };
Mulcom = derive { name="Mulcom"; version="1.16.0"; sha256="129gw95zqkfalnvslzx6k99qy7l0fgimb96ghlghdv2rj4xjhiwg"; depends=[Biobase]; };
MultiMed = derive { name="MultiMed"; version="1.0.0"; sha256="1lhf0dj3xw52d0glqgij42qjyzqwwb1jkjcnqgc8ign22smz1bx0"; depends=[]; };
NCIgraph = derive { name="NCIgraph"; version="1.14.0"; sha256="0d6pigamrib2q8j5zg9i84rl43q4hlg2m29q37zf6m4y1m9dffy4"; depends=[graph graph KEGGgraph RBGL RCytoscape]; };
NGScopy = derive { name="NGScopy"; version="1.0.0"; sha256="0xyr2zspg9vghc2cmrczrb2v0qjzks649vysl716ccynl9yk4ccd"; depends=[]; };
NOISeq = derive { name="NOISeq"; version="2.8.0"; sha256="04qz721khji40lr3w8bjddxkvvyr85d2z094sj64ylfkjyxzdmhf"; depends=[Biobase]; };
NTW = derive { name="NTW"; version="1.16.0"; sha256="0wflyx2vdaffk56nbik5yrbp73yvalf44v7m5y9cndxywq9713iy"; depends=[]; };
NarrowPeaks = derive { name="NarrowPeaks"; version="1.10.0"; sha256="0d1rmvzy1cd2ivlazr1fvls4jcp81j00dpxh7mnkzla2gbjspvac"; depends=[BiocGenerics S4Vectors IRanges GenomicRanges GenomeInfoDb CSAR]; };
NetPathMiner = derive { name="NetPathMiner"; version="1.2.0"; sha256="04bz4y8vvciqdhmmicj93igw71hzyxq6aak88qdj5ks7ihplllbm"; depends=[]; };
NetSAM = derive { name="NetSAM"; version="1.6.0"; sha256="1gqazmm9arqv8kn0lfs12r1dl8w19mivfr682rqhcvizdpczij7s"; depends=[graph]; };
NormqPCR = derive { name="NormqPCR"; version="1.12.0"; sha256="0g4x33bjg35bxxw1024fsp6fbfrsj16sk5ihnghgwg927jdypmn2"; depends=[Biobase ReadqPCR]; };
NuPoP = derive { name="NuPoP"; version="1.16.0"; sha256="065a63fy62gqsrnzxw26fch0gs3xgilcvbc7zhcp5klyndzalr30"; depends=[]; };
OCplus = derive { name="OCplus"; version="1.40.0"; sha256="09g03mrzby4rv0xkb705camnhyqgmlg7p2xzcsac5ncci05ivhc3"; depends=[multtest]; };
OLIN = derive { name="OLIN"; version="1.44.0"; sha256="0rah35s96slcddggs56cinvv8p764r8k09i5wgz7irk6q39v21rz"; depends=[marray limma marray]; };
OLINgui = derive { name="OLINgui"; version="1.40.0"; sha256="052ngldrq80qjkxjfkb68d0g5xv29s02h4n56cqjnydkhjnyfc50"; depends=[OLIN marray OLIN tkWidgets widgetTools]; };
OSAT = derive { name="OSAT"; version="1.14.0"; sha256="0mm67jd79slz8d0laswiljbvc6s4iii516wfpl9mlkrfrnyymr4l"; depends=[]; };
OTUbase = derive { name="OTUbase"; version="1.16.0"; sha256="1a4ynx9lwkphgqg9s7m5x6vs9swk4pvfrq9a222ry9mx4019v240"; depends=[S4Vectors IRanges ShortRead Biobase Biostrings]; };
OmicCircos = derive { name="OmicCircos"; version="1.4.0"; sha256="07kyi4ag39bnpalgv1p88hy6270q0l2y5w806p9p7j1y9n5w5bmc"; depends=[GenomicRanges]; };
OncoSimulR = derive { name="OncoSimulR"; version="1.0.0"; sha256="1dy8xfmh61g678hihnzjgjc5p55y41n40hp2vygx1hi19sha5fm9"; depends=[graph Rgraphviz]; };
OrderedList = derive { name="OrderedList"; version="1.38.0"; sha256="1zxz154jqcm39w05cc96kik7g7s1274bm24i7v137jrcgr21yih0"; depends=[Biobase twilight Biobase twilight]; };
OrganismDbi = derive { name="OrganismDbi"; version="1.8.1"; sha256="0j2d3gpp49nh0igzbwjkrccqyxnwdg2i4s4gch6hkbnyj2v3bdhs"; depends=[AnnotationDbi GenomicFeatures BiocGenerics graph RBGL AnnotationDbi]; };
OutlierD = derive { name="OutlierD"; version="1.30.0"; sha256="0xww3z8zjyypzrbgn0knlmpa0xg05clzwwihq5fxn7kj5db7nw46"; depends=[Biobase]; };
PAA = derive { name="PAA"; version="1.0.0"; sha256="0zsr8gd61g9imi2ns1wzz8k3zhcqrgxa6671fc8mrr5zzdlj17pd"; depends=[limma sva]; };
PADOG = derive { name="PADOG"; version="1.8.0"; sha256="0cjbpq55zx8xd44fk02chfi2fn7m0z3kg9nn6vls4awb3p8ih3bk"; depends=[limma AnnotationDbi Biobase limma AnnotationDbi Biobase]; };
PANR = derive { name="PANR"; version="1.12.1"; sha256="0k9ysn0yi7daqklsjdxkiqqp2i5ha8bx20jxfyipva0x83gvx1l1"; depends=[]; };
PAPi = derive { name="PAPi"; version="1.6.1"; sha256="0i7gazmpg3izfc8ha7snk3f03d2na5rxd4jddbhy84ccgc44ddb1"; depends=[KEGGREST]; };
PAnnBuilder = derive { name="PAnnBuilder"; version="1.30.1"; sha256="03qxq3wnyknxavladqvpyci0xnwh72paq8wl2ci6vjr6xrwdlb6h"; depends=[Biobase AnnotationDbi Biobase AnnotationDbi]; };
PCpheno = derive { name="PCpheno"; version="1.28.0"; sha256="14lf4jhbslx64bppfk5hxj7i2brdxzrw1hcyzdy69f1sb2wlgjcp"; depends=[Category ScISI SLGI ppiStats annotate AnnotationDbi Biobase Category graph GSEABase ScISI]; };
PECA = derive { name="PECA"; version="1.2.0"; sha256="096km1yla9cbpf90fiz75zz07nnm83lnfi95k73whyh8rs10wpn4"; depends=[limma affy genefilter preprocessCore]; };
PGSEA = derive { name="PGSEA"; version="1.40.0"; sha256="11z4hdfddwhjdp0nf7q9k390x63ig9y110c59y3fd04ylqpc6y0b"; depends=[AnnotationDbi annaffy Biobase]; };
PICS = derive { name="PICS"; version="2.10.0"; sha256="0y3i4q2ydsc0q99iij9hcs4m7y27rvqw7z0hk21p4xary24z0xzj"; depends=[BiocGenerics IRanges GenomicRanges Rsamtools GenomicAlignments]; };
PING = derive { name="PING"; version="2.10.0"; sha256="1b0vygpl3vs46frjxwjdbc7dg5bllvm0kdcyw642ay7c8shbfzk4"; depends=[chipseq IRanges GenomicRanges PICS Gviz BSgenome BiocGenerics]; };
PLPE = derive { name="PLPE"; version="1.26.0"; sha256="0knww741zh3yb2wr9wnncw77q7iwgcw08wfwdjpg3z0gj8jx926g"; depends=[Biobase LPE]; };
PREDA = derive { name="PREDA"; version="1.12.0"; sha256="0p42nkgxxv6bj6lvvbldb5yw1bxa0vclziyyvd560j1fvh8f8qna"; depends=[Biobase multtest annotate]; };
PROMISE = derive { name="PROMISE"; version="1.18.0"; sha256="15b34cymhcpd3qlvg0rbfp478bq37f7z6y8b96f4y6wnf6a1il54"; depends=[Biobase GSEABase Biobase GSEABase]; };
PROcess = derive { name="PROcess"; version="1.42.0"; sha256="18gr05ws2nvq05jwk45fmck541r7qrlcf5v9wgkgwcbbyfqyjpyr"; depends=[Icens Icens]; };
PSEA = derive { name="PSEA"; version="1.0.0"; sha256="1ncjdvp9qdx0xiqz7m3ri9jpdcj8p7760ngcdi7f6h4lnhs94d16"; depends=[Biobase]; };
PSICQUIC = derive { name="PSICQUIC"; version="1.4.5"; sha256="1b17dazaw8i0v6srxv9llh1hhmh1wq3d63sajjmqwvrwpw5i69jl"; depends=[IRanges biomaRt BiocGenerics]; };
PWMEnrich = derive { name="PWMEnrich"; version="4.2.0"; sha256="1svpl0cawfzj9749jc7sl66spb455b5ja2n2bjcp9mwns8z4s92z"; depends=[BiocGenerics Biostrings seqLogo]; };
PathNet = derive { name="PathNet"; version="1.6.0"; sha256="0l16vaj3f4h5x0kf4njnblnrd6pmdpjya97pw48zgi85ws64473k"; depends=[]; };
Pbase = derive { name="Pbase"; version="0.4.0"; sha256="0cin9kkdmcyasaxpn8608k5j10hqp8lkmgjwymvdw4v508ych73k"; depends=[BiocGenerics Gviz cleaver Biobase Biostrings IRanges S4Vectors mzID mzR MSnbase Pviz]; };
PhenStat = derive { name="PhenStat"; version="2.0.1"; sha256="1qpdcch32mg7rmjbklgq7bkc6hrw20dqanl7xkglzzf1wi19pmnn"; depends=[limma]; };
Polyfit = derive { name="Polyfit"; version="1.0.0"; sha256="0dg48simy02fhmk49vinqn7x9cl83akr78s0zcs7v1v0ggv642qa"; depends=[DESeq]; };
ProCoNA = derive { name="ProCoNA"; version="1.4.1"; sha256="1llkls9wbjmngz15pip92xpn2x66vhy5wl5qbc3zw44vnx2352lg"; depends=[MSnbase BiocGenerics GOstats]; };
Pviz = derive { name="Pviz"; version="1.0.0"; sha256="0chiz5rfqpq90d63jbys9884jxhk5i9vb0ag4n41x1bgl65wdskd"; depends=[Gviz biovizBase Biostrings GenomicRanges IRanges]; };
QDNAseq = derive { name="QDNAseq"; version="1.2.4"; sha256="04arnk1qvad0mh4vz7z1akddw44xjz7v761366xvww5zkjq1lx0w"; depends=[Biobase CGHbase CGHcall DNAcopy Rsamtools]; };
QUALIFIER = derive { name="QUALIFIER"; version="1.10.0"; sha256="00i06qcqf1ywrzg48cs1f7fjwmkb9y8bysbi9m0kn6mqg0vd98l3"; depends=[flowCore flowViz ncdfFlow flowWorkspace flowCore flowViz flowWorkspace Biobase]; };
QuasR = derive { name="QuasR"; version="1.6.2"; sha256="02jgxh73pyl5zmzbaj65a2bsmfw9csyqlkmxqxnh63g1c20b6xbl"; depends=[GenomicRanges Rbowtie zlibbioc BiocGenerics S4Vectors IRanges BiocInstaller Biobase Biostrings GenomicRanges BSgenome Rsamtools GenomicFeatures ShortRead GenomicAlignments Rsamtools]; };
R453Plus1Toolbox = derive { name="R453Plus1Toolbox"; version="1.16.0"; sha256="1xb3jmcb6jkxg0w3i4zaqbydnim5im6l9v54kmcysknw2b7y3sxf"; depends=[Biobase Biostrings GenomicRanges BiocGenerics biomaRt BSgenome IRanges XVector Rsamtools ShortRead VariantAnnotation]; };
RBGL = derive { name="RBGL"; version="1.42.0"; sha256="1a2pc0a6mmw50wznbh9qpwyfy9c0rkl41a9rsvzx85y9wlysv6fl"; depends=[graph]; };
RBioinf = derive { name="RBioinf"; version="1.26.0"; sha256="10mx0qqhwhqcrilyfilbrk0xfq4szgi8gp85nqsx4iipha6i1i2y"; depends=[graph]; };
RCASPAR = derive { name="RCASPAR"; version="1.12.0"; sha256="1laj2pg2q761y7l91wdn6dm24rb22vk52ckx91r6pm13gdj3ma41"; depends=[]; };
RCytoscape = derive { name="RCytoscape"; version="1.16.0"; sha256="0yswjdw1q5qai7a0g2ncqx166vl409kv95wc255284b1iljyd21y"; depends=[graph BiocGenerics]; };
RDAVIDWebService = derive { name="RDAVIDWebService"; version="1.4.0"; sha256="0r460vd2q4xvri9piqkdfka4wq95h12gs8py1ybkvbwdl4sxvflx"; depends=[graph GOstats Category RBGL]; };
RDRToolbox = derive { name="RDRToolbox"; version="1.16.0"; sha256="0jiyxw1pdbsjlmkxqgxs9ib3ap8n7mrgnxccvgj854khv92lw1gq"; depends=[]; };
REDseq = derive { name="REDseq"; version="1.12.0"; sha256="0wkwkcfhqmbzxmwz7h396skirywwpdrbax8hdwmj0c4c6w612ccp"; depends=[BiocGenerics multtest Biostrings BSgenome ChIPpeakAnno BiocGenerics AnnotationDbi Biostrings ChIPpeakAnno IRanges multtest]; };
RGSEA = derive { name="RGSEA"; version="1.0.0"; sha256="150cqysn5n689b86cp1ib4zh75h7w04xi96fnyd6mky11vy0c5yc"; depends=[BiocGenerics]; };
RGalaxy = derive { name="RGalaxy"; version="1.10.0"; sha256="1p9dcxp2xqvcxdl3gikbf89n1mhhhpkqhd6drxmljgxbj790paxz"; depends=[BiocGenerics Biobase]; };
RIPSeeker = derive { name="RIPSeeker"; version="1.6.0"; sha256="04kfxwp6h6iw60v1hacaj054r2l2v1p3csv4rvhirdiwdcgljfxp"; depends=[IRanges GenomicRanges Rsamtools GenomicAlignments rtracklayer]; };
RLMM = derive { name="RLMM"; version="1.28.0"; sha256="1hdmqbvp7p3svldbb25kn2498y93807aj5b2qi72vdrf4wpxjabj"; depends=[]; };
RMassBank = derive { name="RMassBank"; version="1.8.1"; sha256="09yd8zc9ba2mf9cws99cpg330h6gryszn0pclvq9jn2azdvqag68"; depends=[mzR]; };
RNASeqPower = derive { name="RNASeqPower"; version="1.6.0"; sha256="1am0y36v29lig3d52a68kdivv5bwabfaxd6npmm4xsdqfafyffrs"; depends=[]; };
RNAinteract = derive { name="RNAinteract"; version="1.14.0"; sha256="1hjn6vhkal5k1m15sjnr4zf5r90mj9mchscim2818xc7cbw5bqzy"; depends=[Biobase cellHTS2 geneplotter limma splots]; };
RNAither = derive { name="RNAither"; version="2.14.0"; sha256="1izlnxlbjcsvdlhji93sv4ap8n5qqai8pyk3npnawrci2b50niiz"; depends=[topGO RankProd prada geneplotter limma biomaRt splots]; };
ROC = derive { name="ROC"; version="1.42.0"; sha256="0g1whrm9c0x8aqa01am3gr0kjnm6gryvwfw430dj2hcrvsjpwg4j"; depends=[]; };
ROntoTools = derive { name="ROntoTools"; version="1.6.1"; sha256="0a72nkx8ichc35hl9iwc5rf2d4mm2rd39nlvb1pjag3lp65wa3ax"; depends=[graph KEGGREST KEGGgraph Rgraphviz]; };
RPA = derive { name="RPA"; version="1.22.0"; sha256="015slb9g3my3hv59ja4czvi2bcxf30ldgy8nazn6qmph78pdbm9b"; depends=[affy]; };
RRHO = derive { name="RRHO"; version="1.6.0"; sha256="1i1i0kk6la20hd0gk9q5pai7lrzxjz6dj10wiylgg2bg63dkqbm4"; depends=[]; };
RSVSim = derive { name="RSVSim"; version="1.6.1"; sha256="1xqgl0xq90ax42y5yhfk6v5py5nsgm0mms8rx87fyb3zg2aihx4y"; depends=[Biostrings GenomicRanges IRanges ShortRead]; };
RTCA = derive { name="RTCA"; version="1.18.0"; sha256="14q30yf6lxwn5nnn4p9hsqsc2i10vfki0hl6slz6nw5nszc1bkf8"; depends=[Biobase]; };
RTN = derive { name="RTN"; version="1.4.1"; sha256="1fh14m8zk6rl5bbwldbvysrl8csn9wczb8aicsiscndqdi9914v4"; depends=[RedeR minet limma IRanges]; };
RTopper = derive { name="RTopper"; version="1.12.0"; sha256="1cghjbz2nwamvny858p8xg6azzgwqr7922dk6iiczyl7brvgmf5r"; depends=[Biobase limma multtest]; };
RUVSeq = derive { name="RUVSeq"; version="1.0.0"; sha256="19c5shg278zaqhnhq7kx6xf8i34g42lcd2ri26y6rkg870lbs5f0"; depends=[EDASeq edgeR]; };
RUVnormalize = derive { name="RUVnormalize"; version="1.0.0"; sha256="1s5a1dw99qvxrm0dhgy973nwrpif7hgqzq4x8x9ydy6p8s7fj07k"; depends=[Biobase]; };
RWebServices = derive { name="RWebServices"; version="1.30.0"; sha256="0k9270arzhj6l5vnk2m7dw52nb6py2kgdlrdl2yazbjw4xsi7c9l"; depends=[SJava TypeInfo SJava]; };
RamiGO = derive { name="RamiGO"; version="1.12.1"; sha256="1hdcfmhwm4laap8pxpda3q19fz76xh1zw5wssvagji17x2l0pqiy"; depends=[RCytoscape graph]; };
RankProd = derive { name="RankProd"; version="2.38.0"; sha256="15d0v1pzz5z75w28mi5a67q319zdcjs770w4vmr6vdq366v5ai6v"; depends=[]; };
Rariant = derive { name="Rariant"; version="1.2.0"; sha256="1gli9ill961hblxgw8d33bz462rnas0v4jclnclslfvvlbji27lc"; depends=[GenomicRanges VariantAnnotation IRanges ggbio exomeCopy SomaticSignatures Rsamtools GenomeInfoDb S4Vectors]; };
RbcBook1 = derive { name="RbcBook1"; version="1.34.0"; sha256="05bsnvvvm5xs3vrm0v6jggsmf4d31kzz0aga76scxf66wzvwdnq0"; depends=[Biobase graph]; };
Rbowtie = derive { name="Rbowtie"; version="1.6.0"; sha256="0bjiwrl8dvwmilq85w18lm47a7xji5rmgzy7pfxyb836i75qn70v"; depends=[]; };
Rcade = derive { name="Rcade"; version="1.8.0"; sha256="00rr2gznlfxkq0dlfpc9d62y84av3z7vrrph4yyh8kaz5pyd9qjn"; depends=[GenomicRanges baySeq Rsamtools S4Vectors]; };
Rchemcpp = derive { name="Rchemcpp"; version="2.4.0"; sha256="0kfhn3ry6w5d5wl6asz96662sb7abxhy97q2g3p19qig04v00kdl"; depends=[ChemmineR]; };
RchyOptimyx = derive { name="RchyOptimyx"; version="2.6.0"; sha256="1q9gsmy84lk869j1d6jabdpi0z8ahhpcya62fy965mza901q9cin"; depends=[Rgraphviz graph flowType]; };
Rcpi = derive { name="Rcpi"; version="1.2.0"; sha256="02p4k91472lxrd2l0q1vs1zycbh2gjndc4wmgpkfvzakfcyr7vxr"; depends=[Biostrings GOSemSim ChemmineR fmcsR]; };
Rdisop = derive { name="Rdisop"; version="1.26.0"; sha256="1d96mwc26nplax0063mz5ymz4x72vcd8zhsyn06c41r3j7ql6xl3"; depends=[]; };
ReQON = derive { name="ReQON"; version="1.12.0"; sha256="11b3b6s0i0kj8r3nadl6ckqsx7zqgapgwkivxd5wzswrrznpjjiz"; depends=[Rsamtools seqbias]; };
ReactomePA = derive { name="ReactomePA"; version="1.10.1"; sha256="0spq6zvvnjcxs9k7rfj27af7yb442md82r5bcyjp0vjn5l1g4ph7"; depends=[DOSE AnnotationDbi graphite]; };
ReadqPCR = derive { name="ReadqPCR"; version="1.12.0"; sha256="1cy58aappyydqwan7jwaq2mr32pcy0xl2zzp8fzfvirjbrvj5d0f"; depends=[Biobase affy Biobase]; };
RedeR = derive { name="RedeR"; version="1.14.10"; sha256="1aijy1mzkpbjcgsjirqmjbw6gblgpb456sby5yzgqlnz5jqbh13j"; depends=[]; };
RefNet = derive { name="RefNet"; version="1.2.1"; sha256="0960aj6lmxnam8763nlqiz8acxm7d2lz9vn49zwh68lb4rpv8qqd"; depends=[IRanges PSICQUIC AnnotationHub BiocGenerics]; };
RefPlus = derive { name="RefPlus"; version="1.36.0"; sha256="160i2zcfr9a1znx01bnssdj7737mvpmnkkycixs5npzy06hkf5mb"; depends=[Biobase affy affyPLM preprocessCore]; };
Repitools = derive { name="Repitools"; version="1.12.1"; sha256="1b6c87248z1f28v67zl3h6i7nfd0sxyc1hrbfv9xkkq1092fybms"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges GenomicAlignments BSgenome edgeR DNAcopy Ringo Biostrings Rsamtools rtracklayer]; };
ReportingTools = derive { name="ReportingTools"; version="2.6.0"; sha256="1pk9qp65awffp7nfj71hppqr6nfcakfxp36bmbssjfirycdzj7qx"; depends=[Biobase Category GOstats limma AnnotationDbi edgeR annotate GSEABase BiocGenerics DESeq2 ggbio IRanges]; };
Rgraphviz = derive { name="Rgraphviz"; version="2.10.0"; sha256="1hs1vqix0frwyrrcmvgn9jjr8vzdflag5yc6l1fsslg99c5dmlys"; depends=[graph]; };
Ringo = derive { name="Ringo"; version="1.30.0"; sha256="1krh2c5wqlc32i7s5wwggzba533i74d2zfxn9gic1k2mjnrax7b5"; depends=[Biobase limma BiocGenerics genefilter limma vsn]; };
Risa = derive { name="Risa"; version="1.8.0"; sha256="0iv7v93yikkxk63cjvi80a24akf0gfd24h8bswpl8vqib2nxj74l"; depends=[Biobase biocViews affy xcms]; };
Rmagpie = derive { name="Rmagpie"; version="1.22.0"; sha256="14v9kif2srbmqw2dpyrh8kr1598n63zr5d0lx2r57c4jh5g0cg9p"; depends=[Biobase Biobase]; };
RmiR = derive { name="RmiR"; version="1.22.0"; sha256="0hgg6xjj6jjgizs1qgjx3cgqky188z1b5kqdvf2ryhcn7gjyym2r"; depends=[]; };
Rnits = derive { name="Rnits"; version="1.0.0"; sha256="1v41764jb3q4is99w6ykdihxva8imma6zid16k56xg9b331pnz43"; depends=[Biobase limma affy impute qvalue]; };
Roleswitch = derive { name="Roleswitch"; version="1.4.1"; sha256="1halab8xr5z4kwnirxrmax72ncsw5cmjh7wg9364kjyrgcrkn8am"; depends=[microRNA biomaRt Biostrings Biobase]; };
Rolexa = derive { name="Rolexa"; version="1.22.0"; sha256="0864zas9kbdi3vsw4la08zdf62xnbrfdbghvvfva2kagn783h6l5"; depends=[ShortRead Biostrings IRanges ShortRead]; };
RpsiXML = derive { name="RpsiXML"; version="2.8.0"; sha256="0280clvvshkidkx8xixdn215023rf6xvjhmh3h3gdr7q9msmz4q8"; depends=[annotate graph Biobase RBGL hypergraph AnnotationDbi]; };
Rqc = derive { name="Rqc"; version="1.0.4"; sha256="1wv1yvczxq5jmp3q01yfmkl0w4xq0p1flm2mvi17lfdm4xnh1xlj"; depends=[BiocParallel ShortRead BiocGenerics Biostrings IRanges S4Vectors BiocStyle]; };
Rsamtools = derive { name="Rsamtools"; version="1.18.3"; sha256="14bpdz9yad10dvb49921di3ci8d32y76c3034xqcnnkdcdzcvbsb"; depends=[S4Vectors IRanges GenomeInfoDb GenomicRanges XVector Biostrings BiocGenerics zlibbioc S4Vectors IRanges XVector Biostrings]; };
Rsubread = derive { name="Rsubread"; version="1.16.1"; sha256="0zxvhj25hmd9496wfmc1dp9kaf84640z8xkgyck7llhq80cd4d3a"; depends=[]; };
Rtreemix = derive { name="Rtreemix"; version="1.28.0"; sha256="0gshbb9gxzi3gdxjlp9g920dmy6hdp59ddlb6pyiva33pq9yhpz0"; depends=[graph Biobase]; };
S4Vectors = derive { name="S4Vectors"; version="0.4.0"; sha256="0y3bqkx1jg6xr0b24hd5akj61yjwnmzafld81ic5hi7kz8rncsca"; depends=[BiocGenerics BiocGenerics]; };
SAGx = derive { name="SAGx"; version="1.40.0"; sha256="09vx06m974max7l2wm7d42xsbwayapkfi4nzc83n7nykkx7vqpx3"; depends=[multtest Biobase]; };
SANTA = derive { name="SANTA"; version="2.2.0"; sha256="013bvam139ch20rr774rf1nsssl1y0ckaizsn0ryqpgvrlc78ik7"; depends=[]; };
SBMLR = derive { name="SBMLR"; version="1.62.0"; sha256="0fx0354iqp7m6g42pq9xb34vzy55vqwdh2sxsha835whz5db96vh"; depends=[]; };
SCAN_UPC = derive { name="SCAN.UPC"; version="2.8.1"; sha256="1ky1bp4856dk9hsrvij9k9yr0ygzvx1wmn25jk56lk80kzyybx9m"; depends=[Biobase oligo Biostrings GEOquery affy affyio sva IRanges]; };
SGSeq = derive { name="SGSeq"; version="1.0.6"; sha256="08ngcqr5h0q2y37s0vqcafjyxa5p2shf1zmsydynrghvmfbjlksl"; depends=[BiocParallel GenomicRanges IRanges AnnotationDbi BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomeInfoDb Rsamtools rtracklayer S4Vectors]; };
SIM = derive { name="SIM"; version="1.36.0"; sha256="1d6nv0wszar176lr42jwz2mab5fm7v39sany0gcfqypdw1bb94i4"; depends=[globaltest quantsmooth]; };
SJava = derive { name="SJava"; version="0.92.1"; sha256="0d5v3wvky06f8sd0hr39sw61f2a084winjqy4cd8vkmnxh6y8xcf"; depends=[]; };
SLGI = derive { name="SLGI"; version="1.26.0"; sha256="1b47jz7bgccm345mip5b628cnk2qwd3z0177nyx7lkkx8pyb0fp0"; depends=[ScISI AnnotationDbi Biobase ScISI BiocGenerics]; };
SLqPCR = derive { name="SLqPCR"; version="1.32.0"; sha256="02px4mkqp6mj7bkakqnp85p77ipway96k91jznf3vcingsd52d25"; depends=[]; };
SMAP = derive { name="SMAP"; version="1.30.0"; sha256="0i44gpvc9939q3vyi45d1a7ixpsrc448bf0dmsnrzljgqzv322cv"; depends=[]; };
SNAGEE = derive { name="SNAGEE"; version="1.6.0"; sha256="0ngmcgsf39y3v7pmaxcqgzbndmcc3n8cwzf29qh698nixbqr3q5b"; depends=[]; };
SNPRelate = derive { name="SNPRelate"; version="1.0.1"; sha256="1l4kq76fg7hvqwc7h954rz8880cc0vhgljf6kgi05v7g1yz3bq4v"; depends=[gdsfmt gdsfmt]; };
SNPchip = derive { name="SNPchip"; version="2.12.0"; sha256="0fww0gdpn2vq9n7mlsd72hk55va5vdrn606190skh8v6xh5d3ns1"; depends=[oligoClasses Biobase GenomicRanges IRanges GenomeInfoDb]; };
SPEM = derive { name="SPEM"; version="1.6.0"; sha256="0wkkk473cwvarws9sfk85v2n6cx2dl1fsgs9ai52d9lnnwjf7ixa"; depends=[Biobase]; };
SPIA = derive { name="SPIA"; version="2.18.0"; sha256="1k45hbdgwrfbaz5h02d37599bbxx5lfnisbh3hzmzi00jfvjlg54"; depends=[KEGGgraph]; };
SQUADD = derive { name="SQUADD"; version="1.16.0"; sha256="117cdn7xy8priy7g06r57dbby1sq43ln9x6mc126szig89hp4wsr"; depends=[]; };
SRAdb = derive { name="SRAdb"; version="1.20.13"; sha256="0h1v4bz3syzh2z9p832fp981fkq5yzf4yvrpprfghpbsqmqhq1xh"; depends=[graph GEOquery]; };
SSPA = derive { name="SSPA"; version="2.6.0"; sha256="1svgzxlk64lhha8j00nji8jzihd6172jizk78m5wxy28cvcpngjs"; depends=[qvalue limma]; };
STAN = derive { name="STAN"; version="1.0.0"; sha256="0q0d0yyzs549vhpxk4lmxjhih97a6k4r7xxlq7mmrhja6ylm7sh7"; depends=[]; };
STATegRa = derive { name="STATegRa"; version="1.0.0"; sha256="0vi268m7b7l9pmxmi705920pygkfxmq2lqy9gijbzrf3gb8m0l5v"; depends=[Biobase]; };
STRINGdb = derive { name="STRINGdb"; version="1.5.5"; sha256="0bds67n1bdin2cjiswdlpc8f0nw4j9px17255j8qmz5saf2yflgl"; depends=[]; };
SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.20.0"; sha256="043wxqdmafs96xnwzvjj1xfccg7nzkha99pryz50cvrpy85si5s8"; depends=[]; };
ScISI = derive { name="ScISI"; version="1.38.0"; sha256="094gdjmzjy39ch1fjbin1rnaybqfnvnahzqzfyx3cm0vwz0sddf7"; depends=[RpsiXML annotate apComplex AnnotationDbi RpsiXML annotate]; };
SemDist = derive { name="SemDist"; version="1.0.0"; sha256="1gbbbslifpqxr6ndbrmpif5dm6l99nprzxrdjb113qzdxcs27m9p"; depends=[AnnotationDbi annotate]; };
SeqArray = derive { name="SeqArray"; version="1.6.1"; sha256="18nfd9mhgmgqr5ww5lv3xkxrdc3cprd4hp5l3cwk9h7x0yg7v0sz"; depends=[gdsfmt Biostrings GenomicRanges IRanges S4Vectors VariantAnnotation gdsfmt]; };
SeqGSEA = derive { name="SeqGSEA"; version="1.6.0"; sha256="1ql2f9hdiq5h3ry02kgwjm4mf07z8aqxk7019zq656an09d3aby2"; depends=[Biobase DESeq biomaRt]; };
SeqVarTools = derive { name="SeqVarTools"; version="1.4.0"; sha256="07i36kfhd329h721xq23nyhi08lavnmfj6dymlcqf1pg4njv8fxa"; depends=[SeqArray GenomicRanges IRanges]; };
ShortRead = derive { name="ShortRead"; version="1.24.0"; sha256="0gvkzwz22bifh49yhxdj0pklc9h1i629rhhaicmz24nwa68dfc7x"; depends=[BiocGenerics BiocParallel Biostrings Rsamtools GenomicAlignments Biobase S4Vectors IRanges GenomeInfoDb GenomicRanges zlibbioc S4Vectors IRanges XVector Biostrings]; };
SigCheck = derive { name="SigCheck"; version="1.0.2"; sha256="12fzadfnc5csjdk64krm95zar5wqb4xkcp1h00slhkng4580va38"; depends=[MLInterfaces Biobase BiocParallel]; };
SigFuge = derive { name="SigFuge"; version="1.4.0"; sha256="1j4781c26x7pi0p6vgq1z9lfmjlhb07y20l4jacarpffilb6nnkh"; depends=[GenomicRanges]; };
SimBindProfiles = derive { name="SimBindProfiles"; version="1.4.0"; sha256="0xl3295gabaycvxmgaijr6lgy52py2fv5gd3vpmnfzn9cfsw0a8i"; depends=[Ringo limma Biobase]; };
SomatiCA = derive { name="SomatiCA"; version="1.10.0"; sha256="19gs6gkm3jchri1npyrcjgns0hk1b07ifajbimpc43s6dyx2dq6q"; depends=[DNAcopy GenomicRanges IRanges DNAcopy GenomicRanges IRanges]; };
SomaticSignatures = derive { name="SomaticSignatures"; version="2.2.3"; sha256="16dnaip4x3fqrgs59hl1n0x61165xaz40pzzkcng4rzvvf1yya5n"; depends=[VariantAnnotation GenomicRanges S4Vectors IRanges GenomeInfoDb Biostrings ggbio pcaMethods Biobase]; };
SpacePAC = derive { name="SpacePAC"; version="1.4.0"; sha256="0bywmkaj208qlgndsg0x415vvlsgvdhpn64dzxsw4dh9d2ilygb8"; depends=[iPAC]; };
SpeCond = derive { name="SpeCond"; version="1.20.0"; sha256="1im1fry6c19v1kds82nw12i4xv7v6x2shr5s0wf22m2adz6hgj5c"; depends=[Biobase]; };
SplicingGraphs = derive { name="SplicingGraphs"; version="1.6.0"; sha256="0m70j5wqmldgnhvk1lfaq024yzx85m05c3f7z9y3yjsmxy75mlhp"; depends=[BiocGenerics S4Vectors IRanges GenomicRanges GenomicFeatures GenomicAlignments Rgraphviz BiocGenerics IRanges GenomicRanges GenomicFeatures GenomicAlignments graph Rgraphviz]; };
Starr = derive { name="Starr"; version="1.22.0"; sha256="1kclc4qsgj0v3r18yk0qmlz906bg8v8f7h76ils983zdb42p5d5n"; depends=[Ringo affy affxparser zlibbioc]; };
Streamer = derive { name="Streamer"; version="1.12.0"; sha256="0h93z1kqyrb713dn6zabppbr0lcwrp3d9m7c00gm4hg0dlpc3y1s"; depends=[graph RBGL BiocGenerics]; };
Sushi = derive { name="Sushi"; version="1.2.0"; sha256="12zdd6c50li95qipck2zrqlx458rhklgja09887cby7s5s54vzca"; depends=[biomaRt]; };
SwimR = derive { name="SwimR"; version="1.4.0"; sha256="02sdfc50siix81qvsc41d2khc6zijjgh337zjypglsp2k2lg1hfi"; depends=[]; };
TCC = derive { name="TCC"; version="1.6.5"; sha256="17cyfv1401xrscxk7n10s85b6zyw5amc924hz1hsdgsvqm8kv1p0"; depends=[DESeq DESeq2 edgeR baySeq ROC]; };
TDARACNE = derive { name="TDARACNE"; version="1.16.0"; sha256="1yqf747bx6vm09yjclf787xz2j3nhk1fiwwmkp4wrd7fazqfnchl"; depends=[Rgraphviz Biobase]; };
TEQC = derive { name="TEQC"; version="3.6.0"; sha256="0072qasrzl50ril7jz96mkxkc290ifk8fs7r3mjmx2v8a7ifxak4"; depends=[BiocGenerics IRanges Rsamtools Biobase]; };
TFBSTools = derive { name="TFBSTools"; version="1.4.0"; sha256="1vkx7mnik79pdq02x8r73y8hmdaf8g6f2f1lf0fissvmg8z7v13w"; depends=[Biostrings seqLogo GenomicRanges XVector rtracklayer BSgenome S4Vectors IRanges CNEr BiocParallel DirichletMultinomial]; };
TSCAN = derive { name="TSCAN"; version="1.2.0"; sha256="0pkx5nij9qag5ki8fgs1ygi06aybwkjn4n7qcr95qzafjqxr9r19"; depends=[]; };
TSSi = derive { name="TSSi"; version="1.12.0"; sha256="1dynhh1pn4bc57brs7jf9q7na71zd3pc9nj03n76g0rfy92n78gi"; depends=[BiocGenerics IRanges BiocGenerics S4Vectors Biobase IRanges]; };
TargetScore = derive { name="TargetScore"; version="1.4.0"; sha256="1djnws8qls7kqq7bs950z9cdhz8fm79i4b5l3z9xn27divhadz8h"; depends=[]; };
TargetSearch = derive { name="TargetSearch"; version="1.22.0"; sha256="0xzn71kdif1maicla2xlk40zf1lih1yd742dz3yyrig4d8mhfasl"; depends=[mzR]; };
TitanCNA = derive { name="TitanCNA"; version="1.4.0"; sha256="1715mzds758z8k7lz9bn2r9f9azrf359d4ryac514w0f1v56f1hk"; depends=[IRanges Rsamtools GenomeInfoDb]; };
ToPASeq = derive { name="ToPASeq"; version="1.0.1"; sha256="0ilsjx2ys425bg9nsk909xii1rpddqpmjxlhsd0196b5vmcdpy0m"; depends=[graphite graph edgeR DESeq2 GenomicRanges DESeq limma SPIA clipper]; };
TransView = derive { name="TransView"; version="1.10.0"; sha256="08jzlzp7skmkllangb1d5fksdznb5qxnr036hksr8nakndjwv1ra"; depends=[GenomicRanges Rsamtools zlibbioc IRanges Rsamtools]; };
TurboNorm = derive { name="TurboNorm"; version="1.14.0"; sha256="14zfl2xrn55mwws7mx8q70fa8ym5dfdgqzmfk6ygbn6g2f57i8vr"; depends=[convert limma marray affy]; };
TypeInfo = derive { name="TypeInfo"; version="1.32.0"; sha256="1ha815a0f07hnlqjw3r10h2da7bdsvdil513f9xm41is4npf8f1b"; depends=[]; };
UNDO = derive { name="UNDO"; version="1.8.0"; sha256="0ka1n3fjk7awh128wbgw08z3z7s2fnkj3xnrmqrz0ydqhhz58654"; depends=[BiocGenerics Biobase]; };
UniProt_ws = derive { name="UniProt.ws"; version="2.6.2"; sha256="0h3w6ldi3ni3g1546c12p987q9shksj2s18pfyqbk2jdxygph3i0"; depends=[BiocGenerics AnnotationDbi]; };
VanillaICE = derive { name="VanillaICE"; version="1.28.5"; sha256="0lfhhawkvv4ah4wbk7krmwq5ymmgyqzk6ni66ij6slm5nsib253s"; depends=[GenomicRanges Biobase oligoClasses IRanges S4Vectors GenomeInfoDb crlmm]; };
VariantAnnotation = derive { name="VariantAnnotation"; version="1.12.9"; sha256="06s1fxiw3dxjy5li3kn4p46bymrgssx4pfmrgvdra1wcfqx29qbq"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Rsamtools zlibbioc Biobase S4Vectors IRanges XVector Biostrings AnnotationDbi BSgenome rtracklayer GenomicFeatures S4Vectors IRanges XVector Biostrings Rsamtools]; };
VariantFiltering = derive { name="VariantFiltering"; version="1.2.14"; sha256="0275cy9xpxjp9jff3my97s5pa193f2i6ll54wsm5l8qvkpilqr1i"; depends=[BiocGenerics Biobase S4Vectors IRanges AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicRanges GenomicFeatures Rsamtools BSgenome VariantAnnotation S4Vectors IRanges XVector Biostrings]; };
VariantTools = derive { name="VariantTools"; version="1.8.1"; sha256="0kr05nh1p128nm50bzrcn2lxnapm4vvgrzakbszxrakgk9span5r"; depends=[S4Vectors IRanges GenomicRanges VariantAnnotation Rsamtools BiocGenerics Biostrings gmapR GenomicFeatures rtracklayer BiocParallel GenomeInfoDb BSgenome]; };
Vega = derive { name="Vega"; version="1.14.0"; sha256="1gzm54glvbm24bb0qvkcmn9zl00dywiwbqcjk9vxf002xbww03pw"; depends=[]; };
VegaMC = derive { name="VegaMC"; version="3.4.0"; sha256="128r0ns20vsp8glxyafa9yms4f2l5iakv0pz0cmq9pgqkg6ni2wz"; depends=[biomaRt Biobase genoset]; };
XDE = derive { name="XDE"; version="2.12.0"; sha256="1x0jy8gx2zd4cdhba3wp2ajyngxcnph3mkiqm5qynm4cd462r3hq"; depends=[Biobase Biobase BiocGenerics genefilter MergeMaid]; };
XVector = derive { name="XVector"; version="0.6.0"; sha256="055sv0289pc1i0bdihms4ml2j44xxgljk566csjr1da7lrjb6qga"; depends=[BiocGenerics S4Vectors IRanges BiocGenerics S4Vectors IRanges S4Vectors IRanges]; };
a4 = derive { name="a4"; version="1.14.0"; sha256="16fy84ra04lly9l188zfbqxk08dm8pkjnpzz04v46aqnmyhnih3v"; depends=[a4Base a4Preproc a4Classif a4Core a4Reporting]; };
a4Base = derive { name="a4Base"; version="1.14.0"; sha256="1dhy6r6mn02mqiz1x7jzpiy71zwclv8b3b7gys0yz4d5d67ywm6r"; depends=[Biobase AnnotationDbi annaffy genefilter limma multtest a4Preproc a4Core]; };
a4Classif = derive { name="a4Classif"; version="1.14.0"; sha256="0j5byji2dhapg5bk1zvpsi7f2ws26npx2jl7nj0qk9fzqagysvh8"; depends=[a4Core a4Preproc MLInterfaces a4Core]; };
a4Core = derive { name="a4Core"; version="1.14.0"; sha256="0pdpbb3i4vc81kf18flx70wv27dnxjb28gnijcmc5v6im7zi33cr"; depends=[Biobase]; };
a4Preproc = derive { name="a4Preproc"; version="1.14.0"; sha256="04af822aaia03d2569fdxyflfhb2ppdaa0aia0afwsf0pmr3lng3"; depends=[AnnotationDbi]; };
a4Reporting = derive { name="a4Reporting"; version="1.14.0"; sha256="13y6xw9c5d2ag6naqjdgr3pz2ajc9liqczjxq5pjj1619pxvsg0s"; depends=[annaffy]; };
aCGH = derive { name="aCGH"; version="1.44.0"; sha256="0bj73kwibkadm3j7j9g5fim5npvcpxgdfqv7qa2lk690vzyn12w6"; depends=[multtest Biobase multtest]; };
adSplit = derive { name="adSplit"; version="1.36.0"; sha256="1h0jkyzn7pkdbvlwfwpbnybpm2zsdxm1n9zggklyxq37xvy2g548"; depends=[AnnotationDbi Biobase multtest]; };
affxparser = derive { name="affxparser"; version="1.38.0"; sha256="19pvq35hip53qzglfh39vwnpkbw6h4bxjfy8k06amh6i9pbwg3wl"; depends=[]; };
affy = derive { name="affy"; version="1.44.0"; sha256="1af0vd7drsg0k4wvp1lrryv23szgmprjpk0kbwj414lc3ddridzw"; depends=[BiocGenerics Biobase affyio BiocInstaller preprocessCore zlibbioc preprocessCore]; };
affyContam = derive { name="affyContam"; version="1.24.0"; sha256="0knr0l6xwcyfpz4l3k23cygm2i0bhsxshs15iyy6ach9hdm57bq4"; depends=[Biobase affy]; };
affyILM = derive { name="affyILM"; version="1.18.0"; sha256="00db5avl50i9h139x5d272qhim8cdr4afc1lhhpi48l4y4zhxc1p"; depends=[gcrma affxparser affy Biobase]; };
affyPLM = derive { name="affyPLM"; version="1.42.0"; sha256="1lyzy0rv7irl2izavs48i7f29i4mb5bn45946s2v8c31f6698qlq"; depends=[BiocGenerics affy Biobase gcrma preprocessCore BiocGenerics zlibbioc preprocessCore]; };
affyPara = derive { name="affyPara"; version="1.26.0"; sha256="03zbc93ba5li1fwv2smfp5859c2dm0anq2biran0zzwav08h3bwm"; depends=[affy vsn affyio]; };
affyQCReport = derive { name="affyQCReport"; version="1.44.0"; sha256="0z0qrxj1xndgx86kfm2vs3dbdw1j44ax9xcdgifb9048z1gw350l"; depends=[Biobase affy affy affyPLM Biobase genefilter simpleaffy]; };
affycomp = derive { name="affycomp"; version="1.42.0"; sha256="18p7f3dhg26fircpxg1gcbn9mi0ysdydm8pnwp49mnwl0sq72435"; depends=[Biobase]; };
affycoretools = derive { name="affycoretools"; version="1.38.0"; sha256="1qn3wr8nbj52sk3r6nhpq9iffhgf4jjs8yqm9q18xlvmqszsq3vy"; depends=[affy Biobase biomaRt limma GOstats annotate annaffy genefilter gcrma AnnotationDbi oligoClasses ReportingTools]; };
affyio = derive { name="affyio"; version="1.34.0"; sha256="0ils272ap69kf3l7d66dzrvdh8gp66wb648iyzy26dbzkjcld3a7"; depends=[zlibbioc]; };
affylmGUI = derive { name="affylmGUI"; version="1.40.2"; sha256="062333g5ks3f58n8xqzklalndiq42njfs9ad805za5si58lg1c2r"; depends=[affyPLM limma affy BiocInstaller affyio gcrma AnnotationDbi]; };
affypdnn = derive { name="affypdnn"; version="1.40.0"; sha256="09xfhcklsh4kpzwjp96hq8i9v7x5nc6n3zl2ybk899ilvhirbsbv"; depends=[affy]; };
agilp = derive { name="agilp"; version="3.8.0"; sha256="0g5hfmwylbxm8r4dn40qkxac2n7hc9hzv4pra60766dgisyz6i15"; depends=[]; };
alsace = derive { name="alsace"; version="1.2.0"; sha256="13phx385i6hj0l054gm6wycvh2ggf653m8sdn81sln8nmrly4lp4"; depends=[]; };
altcdfenvs = derive { name="altcdfenvs"; version="2.28.0"; sha256="1p8d732c13vcim9ny3m832cvzkaw7d63dmj13r1j50y4gqwjfynm"; depends=[BiocGenerics Biobase affy makecdfenv Biostrings hypergraph]; };
ampliQueso = derive { name="ampliQueso"; version="1.4.0"; sha256="0qx2f9dszrgcrcwix78mizb5h4bjqrlsm9mbc3xval1r53vj58i4"; depends=[rnaSeqMap VariantAnnotation genefilter edgeR DESeq]; };
annaffy = derive { name="annaffy"; version="1.38.0"; sha256="1wa045yzsxc3z20ip8s98kczp58yj2ljx9y09xgxalm31462v6yr"; depends=[Biobase AnnotationDbi]; };
annmap = derive { name="annmap"; version="1.8.0"; sha256="0skniiq0lfiz6wcwbrdyq3cv8r46j9k7k5sidigp0gfqa88f9v2f"; depends=[GenomicRanges Biobase Rsamtools genefilter IRanges BiocGenerics]; };
annotate = derive { name="annotate"; version="1.44.0"; sha256="1jmkj4yy9hx8wwzykf667ndykwcigqilk5vph95f9y3nb1zpd4f1"; depends=[AnnotationDbi Biobase BiocGenerics]; };
annotationTools = derive { name="annotationTools"; version="1.40.0"; sha256="1fbnl1a8xy73aisgxh6q023l5q0mb17pd1ww65kq8v978751prs4"; depends=[Biobase]; };
anota = derive { name="anota"; version="1.14.0"; sha256="0byhmv4w86zq1i1fshx7ld0lyixjsyz68wiz7c7vvz8z53dnw1in"; depends=[qvalue multtest qvalue]; };
antiProfiles = derive { name="antiProfiles"; version="1.6.0"; sha256="1avsffrvyi4w7zqp0i1j53cjhbf7xgsjhzc4na8widsrla1jqzx0"; depends=[]; };
apComplex = derive { name="apComplex"; version="2.32.0"; sha256="12vk170npyfhr5m0yyvcijxsigjj0739xaxlx8sq3rx5xdf92lrr"; depends=[graph RBGL Rgraphviz]; };
aroma_light = derive { name="aroma.light"; version="2.2.1"; sha256="120f8r117iidhdlfj73wv276jyl1vs6sdb5pha95ywqq5b3qxvi5"; depends=[]; };
arrayMvout = derive { name="arrayMvout"; version="1.24.0"; sha256="11338l6jhyf90nzkhmgb60dz4hhkfkkzwv02x90ly9q9bq9g2c3q"; depends=[parody Biobase affy lumi simpleaffy mdqc affyContam]; };
arrayQuality = derive { name="arrayQuality"; version="1.44.0"; sha256="0vriyjg3aqgjhxgzlww5h3215smnvdh0rrrq7llfwbxmji3fhfl7"; depends=[limma marray]; };
arrayQualityMetrics = derive { name="arrayQualityMetrics"; version="3.22.1"; sha256="1ynacxsncvnniq4av60046x3y6v42jsvrwyh9snkrjhkfpivh4xj"; depends=[affy affyPLM beadarray Biobase genefilter limma vsn]; };
asmn = derive { name="asmn"; version="1.2.0"; sha256="0kc47p68gv1yn3yflqa2b5bz7c165s55fxpaqgsxpxnanh4ynf17"; depends=[methylumi Biobase]; };
attract = derive { name="attract"; version="1.18.0"; sha256="1xshcyfd78lr9kla1iclz60rz56pxkza04y13jn28ad12dfff1nk"; depends=[AnnotationDbi limma GOstats Biobase AnnotationDbi limma GOstats]; };
ballgown = derive { name="ballgown"; version="1.0.4"; sha256="1pvzm8dxyrxfgw4wypl805wjxnywqnqr0ip8yxwx16qa04vr88ii"; depends=[GenomicRanges IRanges S4Vectors sva limma rtracklayer Biobase GenomeInfoDb]; };
baySeq = derive { name="baySeq"; version="2.0.50"; sha256="08p2kck94hsn6p4xcb4y2q4il236xf5vr44zvxmpvxpbjga1lk3f"; depends=[GenomicRanges]; };
beadarray = derive { name="beadarray"; version="2.16.0"; sha256="10yh90501bdy1gnmxamn6z4rhjiplay2afgd9145bb84hldcwa6d"; depends=[BiocGenerics Biobase BeadDataPackR limma AnnotationDbi GenomicRanges IRanges illuminaio]; };
beadarraySNP = derive { name="beadarraySNP"; version="1.32.0"; sha256="0lmgcbbb4caf2qgbgk574yazil2vif10i3j1d69xhqjr38k936hb"; depends=[Biobase quantsmooth]; };
betr = derive { name="betr"; version="1.22.0"; sha256="1gw9g33cpsbc86825ispf56w16273abxflbb9r3r4hvhv4m1kklx"; depends=[Biobase limma]; };
bgafun = derive { name="bgafun"; version="1.28.0"; sha256="1zrlfv7g0pfmpr55m0rx81zn02k3g278d24qh6xzl2f198zwf6aw"; depends=[made4]; };
bgx = derive { name="bgx"; version="1.32.0"; sha256="0sg56jz4y9z71dp8dq2hdzwp09ij98xsba0a8fap66xw6b249nr1"; depends=[Biobase affy gcrma]; };
bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.10.0"; sha256="0ym8750x94lk62mpgp5gfxs2wqnqsfka5p1gapngq9rhbz15fba5"; depends=[Biobase]; };
bioDist = derive { name="bioDist"; version="1.38.0"; sha256="0lax2lr794gzz6a6l100zkx6f02k9nj1xmn7d3l224s4vkn57zhr"; depends=[Biobase]; };
bioassayR = derive { name="bioassayR"; version="1.4.3"; sha256="1p0r8wplhcxh2xw3wc9gda2mgiynfsqr368xjrgkch2q4f95hkbl"; depends=[]; };
biocGraph = derive { name="biocGraph"; version="1.28.0"; sha256="1rgb7dp24dv5d2nadpl2j4gzqnna1diwciirjb4nmcbb5p8rh8fy"; depends=[Rgraphviz graph Rgraphviz geneplotter graph BiocGenerics]; };
biocViews = derive { name="biocViews"; version="1.34.1"; sha256="1jxdkbi8fdpc3253qy0gxs3xfd5g4d231n9b3r5sy18424c7zvr7"; depends=[Biobase graph RBGL]; };
biomaRt = derive { name="biomaRt"; version="2.22.0"; sha256="0pn5cg5yhxg11yfp4xbnm048y1h7njs42f3mb7gbhzk8ijs783cq"; depends=[AnnotationDbi]; };
biomvRCNS = derive { name="biomvRCNS"; version="1.6.0"; sha256="1bf9s5n3jy3pv6182j8jd7387dlqdy4776vnsi3xn4sz532j2cs6"; depends=[IRanges GenomicRanges Gviz]; };
biosvd = derive { name="biosvd"; version="2.2.0"; sha256="0yig3gpjzzs7m17c76sdzn68s55waxc6n6jgpbcsl3hg84s3ch95"; depends=[BiocGenerics Biobase]; };
biovizBase = derive { name="biovizBase"; version="1.14.1"; sha256="1v3d408yxccpps16j2x8pdk3fzfahbjwscaqr10am9qqsvjrcyfa"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings Rsamtools GenomicAlignments GenomicFeatures AnnotationDbi VariantAnnotation]; };
birta = derive { name="birta"; version="1.10.0"; sha256="12jpmicfdw6c314ypy5galxkc4fgdbpawdf55xvm946dvf30bf11"; depends=[limma Biobase]; };
blima = derive { name="blima"; version="1.0.0"; sha256="0v6a7611ziw0hsklj4w5ry1m1bw0m8lcs75a8ba3brdz0mdhab8k"; depends=[beadarray Biobase BiocGenerics]; };
bridge = derive { name="bridge"; version="1.30.0"; sha256="1dr2hdip01k3j47vl12w7m4c21b3s8sljjq8pibplcgawx1b848g"; depends=[rama]; };
bsseq = derive { name="bsseq"; version="1.2.0"; sha256="10vjm9gycr62qq8bh6widjikf4fjcjvgn0y254i6rncq9la7ihvi"; depends=[BiocGenerics IRanges GenomicRanges Biobase]; };
bumphunter = derive { name="bumphunter"; version="1.6.0"; sha256="115fs6ndzdxfdiqm4lv93b4ym4wh1r2xbfg3vg9i87p0ma59ns7q"; depends=[S4Vectors IRanges GenomeInfoDb GenomicRanges limma BiocGenerics]; };
cancerclass = derive { name="cancerclass"; version="1.10.0"; sha256="0fc8ia12lkgz38bn13j4zknwrknrzlpfbc7j04z48z5996hjny8i"; depends=[Biobase]; };
casper = derive { name="casper"; version="2.0.2"; sha256="1x2gmrjgf29l47ss8claarrhhkn6cyi9833z6sg5q69ndmsij957"; depends=[Biobase IRanges GenomicRanges BiocGenerics EBarrays gaga GenomeInfoDb GenomicFeatures limma Rsamtools rtracklayer S4Vectors]; };
categoryCompare = derive { name="categoryCompare"; version="1.10.0"; sha256="0mj9iipq9alf3cz0wfngsj5lfdjm0zj109l8jdhcqqfhgrf51rd1"; depends=[Biobase BiocGenerics AnnotationDbi GSEABase Category GOstats annotate graph RCytoscape]; };
ccrepe = derive { name="ccrepe"; version="1.2.0"; sha256="1yj91dm43jkfc757y5izqp72lsw39n0pmg9hhpkmlhd5ddyp5ly8"; depends=[]; };
cellGrowth = derive { name="cellGrowth"; version="1.10.0"; sha256="0fqzzz06b6sy5xz4cf7i16m07qk3l42k9hbkr7qggpj6y81f0n96"; depends=[]; };
cellHTS = derive { name="cellHTS"; version="1.36.0"; sha256="1d887wqfn25vh88srxpbbs0z4p2xkxwc3l7d8280j1hg5w1q0nxg"; depends=[prada Biobase genefilter]; };
cellHTS2 = derive { name="cellHTS2"; version="2.30.0"; sha256="0an4z1czl5ai7rm4dbrrxay0z9yfi2v7c033982mzbnnvwa2kcy7"; depends=[Biobase genefilter splots vsn prada GSEABase Category]; };
cghMCR = derive { name="cghMCR"; version="1.24.0"; sha256="1nfb7p7l700nzx4gvmj4n2575d4hj5rm8khf77yim8pqndnr2rg8"; depends=[DNAcopy CNTools limma BiocGenerics]; };
charm = derive { name="charm"; version="2.12.0"; sha256="0pf2qfxydjm9gqy20rskawg04cjmf93013736s5hvq576pa8qw39"; depends=[Biobase genefilter BSgenome Biobase oligo oligoClasses preprocessCore Biostrings IRanges siggenes limma sva]; };
chimera = derive { name="chimera"; version="1.8.5"; sha256="0jbp6kmzq66dypfhnm5ml9q4krkfrjpam8dbm1nym3agxlhr4ywp"; depends=[Biobase GenomicRanges Rsamtools GenomicAlignments AnnotationDbi]; };
chipenrich = derive { name="chipenrich"; version="1.4.0"; sha256="03zsdbdg09s3fjsvz181wgfsq8xgjmdf5n7r9y94a84f6140ixsz"; depends=[GenomicRanges IRanges]; };
chipseq = derive { name="chipseq"; version="1.16.0"; sha256="1mnqrr967h7fizngqq75q67wjvv4b12j0wldjsa7b969fah5jfmn"; depends=[BiocGenerics S4Vectors IRanges GenomicRanges BSgenome ShortRead BiocGenerics IRanges BSgenome GenomicRanges ShortRead]; };
chopsticks = derive { name="chopsticks"; version="1.30.1"; sha256="1igpilcmz4pxcglwbclink07gyx3ysbndg1qsjfaqr1xafip4hmd"; depends=[]; };
chroGPS = derive { name="chroGPS"; version="1.10.0"; sha256="1r300py3n2a0c1nim0g6jnr6llsih0hil3g71fa01dckr37yzhjy"; depends=[IRanges Biobase]; };
cisPath = derive { name="cisPath"; version="1.6.4"; sha256="0h9s84hgy3pgzh39jgjwv81g8g9gj36c6m9n1rz3g26w9hdrcznx"; depends=[]; };
cleanUpdTSeq = derive { name="cleanUpdTSeq"; version="1.4.0"; sha256="06sq1xpi9n4b07i0r1l87pwnlylsy3qav0z6rfnb5df0xycbsrqq"; depends=[BiocGenerics BSgenome GenomicRanges]; };
cleaver = derive { name="cleaver"; version="1.4.0"; sha256="09y7f1qcfp4fdkn21c6gfxrrx95piy168lz8ln1v7fd50lz25ilc"; depends=[Biostrings IRanges]; };
clippda = derive { name="clippda"; version="1.16.0"; sha256="0dv9n6y3c1kfkcnjlyhi9zk80r5glpzihkvdjqpcl06p6i9jgvb4"; depends=[limma Biobase]; };
clipper = derive { name="clipper"; version="1.6.2"; sha256="05rf33h89b31ys1gr1k1i9aipdc8hgciqzfbnhml7glx8v4gnxyp"; depends=[graph Biobase qpgraph KEGGgraph RBGL]; };
clonotypeR = derive { name="clonotypeR"; version="1.4.0"; sha256="197dx26v5vxvpdhbh6ph4lcmk93zrbnx9ac4fclspsyna2q5i9yy"; depends=[]; };
clst = derive { name="clst"; version="1.14.0"; sha256="09gs6489394xnwdsva4kk8qhyixxw5i8pa9nbapld77fkh3mb2ss"; depends=[ROC]; };
clstutils = derive { name="clstutils"; version="1.14.0"; sha256="0qbrijs731xc64zdkm51j5644y6xkvd22skjvlap4fawh6dn538i"; depends=[clst]; };
clusterProfiler = derive { name="clusterProfiler"; version="2.0.1"; sha256="0fnmkgincy9sn0hgggnpy5xd9r8dn14yr829dw2b9d9k2rl2x457"; depends=[AnnotationDbi DOSE GOSemSim]; };
clusterStab = derive { name="clusterStab"; version="1.38.0"; sha256="17w1mz308dp9gjk73k9zh4yhk8ykqh8ya6q2713x6wb8sy66xsrx"; depends=[Biobase]; };
cn_farms = derive { name="cn.farms"; version="1.14.0"; sha256="1p00mlpsn5adsgq51g7v09vpznbbly05sq1qyndq35mmwlsp6l4y"; depends=[Biobase oligoClasses affxparser oligo DNAcopy preprocessCore]; };
cn_mops = derive { name="cn.mops"; version="1.12.0"; sha256="091gmwswlnqnh1b9n7xx3xafs4p7m79fw7fakbs43yrdd8ias6nd"; depends=[BiocGenerics Biobase IRanges GenomicRanges Rsamtools]; };
cnvGSA = derive { name="cnvGSA"; version="1.10.0"; sha256="1wwrpifhg6ppmdrrx8h43mps3h85gv51dm3cn3q198cfhrj4m6yj"; depends=[]; };
coGPS = derive { name="coGPS"; version="1.10.0"; sha256="16hx3pp517nlg2nk5sbhggxijn7ilf7b7l7zf1wv3zbm2myr1rhi"; depends=[]; };
coRNAi = derive { name="coRNAi"; version="1.16.0"; sha256="1gg83a3d1zs9h833pxyb18iixwckj5ccgsch0rrhwxlasa778zb3"; depends=[cellHTS2 limma]; };
cobindR = derive { name="cobindR"; version="1.4.0"; sha256="1c7za0zdpwb49mbhzgyp66pyzvd3nl5hnkdln1s1hwwnqsljivxk"; depends=[Biostrings biomaRt BSgenome IRanges]; };
codelink = derive { name="codelink"; version="1.34.0"; sha256="15rvy25zn3g7rs2h58pamrg3mb3hb4kh8ghvc7vcnbn70rpqh17f"; depends=[BiocGenerics Biobase limma annotate]; };
compEpiTools = derive { name="compEpiTools"; version="1.0.3"; sha256="0rlwxxn4vj2vv2348yjay4p4wbfd5r2h3qc6s276225axv6w0nzq"; depends=[topGO GenomicRanges AnnotationDbi BiocGenerics Biostrings Rsamtools IRanges GenomicFeatures XVector methylPipe S4Vectors GenomeInfoDb]; };
compcodeR = derive { name="compcodeR"; version="1.2.1"; sha256="0r221d2dbhjzh8aqsd74rbjbrfgq2s6amw9zfy3zgjv9hygli84q"; depends=[edgeR limma]; };
convert = derive { name="convert"; version="1.42.0"; sha256="1i8h0d7vdd0h1gk09zmf3aqvaqq3sl11nhm5yrscb2xkwz085ppn"; depends=[Biobase limma marray]; };
copa = derive { name="copa"; version="1.34.0"; sha256="1q1ydzkf7inqyc4hxwrvjkxnqwpqw9nry67lr6igsf9mdzc2lawp"; depends=[Biobase]; };
copynumber = derive { name="copynumber"; version="1.6.0"; sha256="01l8is7f09kr1dq7xzyr65xdr0bx83a4p8yqzyfrvbrjzzildi00"; depends=[BiocGenerics S4Vectors IRanges GenomicRanges]; };
cosmiq = derive { name="cosmiq"; version="1.0.0"; sha256="1vbdc6my002h7kqigkic4qclxyxfy6jpz861vj6f9m0ysjsnlsn6"; depends=[xcms MassSpecWavelet]; };
cqn = derive { name="cqn"; version="1.12.0"; sha256="11rprdpfbjkfpdxvzkd25vr0gn5gqkydafp94bmynf02lk8hvmcq"; depends=[preprocessCore]; };
crlmm = derive { name="crlmm"; version="1.24.0"; sha256="1jgmgf60j1dhpqd7wva1szf8nfcdar2q111njdzx3bi1xqyfcb7s"; depends=[oligoClasses preprocessCore Biobase BiocGenerics affyio illuminaio SNPchip preprocessCore]; };
csaw = derive { name="csaw"; version="1.0.7"; sha256="08k6d6n7pkxrg81hplp0h775bjjnh39m00k52zmc0g56krfx7dhq"; depends=[GenomicRanges Rsamtools edgeR limma GenomicFeatures AnnotationDbi GenomicAlignments S4Vectors IRanges GenomeInfoDb]; };
ctc = derive { name="ctc"; version="1.40.0"; sha256="02c7fah15ci45qrydlqd2brmp8j0s5g8n7ms0akr1d203gc9jzfx"; depends=[]; };
cummeRbund = derive { name="cummeRbund"; version="2.8.2"; sha256="16w4c0bcn55xhqa29kh68qhmpd7hm3mm2m68fm2164lykap2k472"; depends=[BiocGenerics rtracklayer Gviz BiocGenerics Biobase]; };
customProDB = derive { name="customProDB"; version="1.6.0"; sha256="1cp989qp1s5fwl6vy70fyymxcp23hpnvcb0xaznm21f07fnnmkcp"; depends=[IRanges AnnotationDbi biomaRt IRanges GenomicRanges Rsamtools GenomicAlignments Biostrings GenomicFeatures biomaRt VariantAnnotation rtracklayer AnnotationDbi]; };
cycle = derive { name="cycle"; version="1.20.0"; sha256="00ibwn87v982k3qrx44k36dcwrs06s2qwvfdbk03pnm3mnmgaqmj"; depends=[Mfuzz Biobase]; };
daMA = derive { name="daMA"; version="1.38.0"; sha256="19ssjpr3ri1qlj6rx34ddis19rh54waysbjwfhysxzjfphnhpn0c"; depends=[]; };
dagLogo = derive { name="dagLogo"; version="1.4.1"; sha256="0bzy3q7vfhd5c8aq4aj9mfdmafnnzhvq8qaygxdksv42i2affdj1"; depends=[biomaRt motifStack Biostrings]; };
ddCt = derive { name="ddCt"; version="1.20.0"; sha256="1dyz23i31fs35h7ay1vah8v41289vf04djxshm10bazxaa2855w4"; depends=[Biobase]; };
ddgraph = derive { name="ddgraph"; version="1.10.1"; sha256="05hxphpg71d4kzyv4949awdrqhw2hx22lcpmyhv4cbc388nrb9ji"; depends=[graph]; };
deepSNV = derive { name="deepSNV"; version="1.12.0"; sha256="1ff3x138hmlvpcnqsrfbsbsl51rr4a05h8qsgkjijv33k55f5319"; depends=[Rsamtools GenomicRanges IRanges Biostrings VariantAnnotation Rsamtools Rsamtools]; };
deltaGseg = derive { name="deltaGseg"; version="1.6.0"; sha256="0b6pxmxzrdxqj9bd8i589xb7vjs2ckygj2a79vcj7gfcigmga8fd"; depends=[]; };
derfinder = derive { name="derfinder"; version="1.0.10"; sha256="1733lqy4hdq8dl44p3c5l1r0vki1pzxxjawbzx6p2fz8jd0aiilv"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
derfinderHelper = derive { name="derfinderHelper"; version="1.0.4"; sha256="0yiimvsiilj8qh72xijpirdf32gjai5dz1087wgn5rwkwh7qxsi6"; depends=[IRanges S4Vectors]; };
derfinderPlot = derive { name="derfinderPlot"; version="1.0.3"; sha256="0zg3rjswi61zmji93gcslyr1jgppsbhrjcbsr1il6rjklrgkkd07"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio IRanges]; };
dexus = derive { name="dexus"; version="1.6.0"; sha256="1fyg8ll9w74qzgcjy2cbs250dbwnhmivz412i6p62yr1050h0hrp"; depends=[BiocGenerics]; };
diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.48.0"; sha256="0gns3f7zqilzp6zb3lyqrqy2cxzrahbv2vc5qygpnrx9pa0dpbqz"; depends=[]; };
dks = derive { name="dks"; version="1.12.0"; sha256="13g027l318x4zhv2aq02cg9xciqir662xawpgq3r93z57a756473"; depends=[]; };
domainsignatures = derive { name="domainsignatures"; version="1.26.0"; sha256="1m8l7v2k0vl0mcbmqfqsd7ssiki8zsgn14209dzs0j6hbsikkj4j"; depends=[prada biomaRt AnnotationDbi]; };
dualKS = derive { name="dualKS"; version="1.26.0"; sha256="0gf36sr7ihpzy0czn11md37hjcykcryvm6fpvnshal4jd5ak3wng"; depends=[Biobase affy]; };
dyebias = derive { name="dyebias"; version="1.24.0"; sha256="0wy8sisxzlhc2m8pcfsqdkdchhskhy3j5vn5bn2sj8fb2h4h0fm4"; depends=[marray Biobase]; };
easyRNASeq = derive { name="easyRNASeq"; version="2.2.1"; sha256="1p5i50169qks4prw3dmy5ic6y3w7gmsxzvfg409xy1gj766xkr16"; depends=[Biobase BiocGenerics biomaRt Biostrings DESeq edgeR genomeIntervals GenomicAlignments GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
ecolitk = derive { name="ecolitk"; version="1.38.0"; sha256="1msw03bxvzzk7x15d42qrmhrf0h6ivgvsnmfn4jszxdrvpwhbv41"; depends=[Biobase]; };
edgeR = derive { name="edgeR"; version="3.8.6"; sha256="0lz9rx7v7ksmfy6jl1w8m6dv184c8gmvpgx457j2wqlg9jm939w5"; depends=[limma]; };
eiR = derive { name="eiR"; version="1.6.0"; sha256="0d3dj5k891g00anl5nad3xfgz4jg40nvw80qiwrl3ac0nyrfa00p"; depends=[ChemmineR ChemmineR BiocGenerics]; };
eisa = derive { name="eisa"; version="1.18.0"; sha256="1yly3v4ic9qhlcps729vvz8y5hjwk2z5wz0xgkjzihzmfjd85kyk"; depends=[Biobase AnnotationDbi BiocGenerics Category genefilter]; };
ensemblVEP = derive { name="ensemblVEP"; version="1.6.2"; sha256="09k8480cgcs40zw10i5zvajb8n7s9165617faqxx62894iv6nxp5"; depends=[BiocGenerics GenomicRanges VariantAnnotation Biostrings]; };
epigenomix = derive { name="epigenomix"; version="1.6.0"; sha256="0xd380gzgld43k9lib66g56miak8gn65hzxnnlva5f67jwwmb4z6"; depends=[Biobase IRanges GenomicRanges BiocGenerics Rsamtools beadarray]; };
epivizr = derive { name="epivizr"; version="1.4.6"; sha256="0n049ck7r9090hmch9q41dlzdqm05ipv9lzdbdwf0bdy2cbqjaj2"; depends=[Biobase GenomicRanges S4Vectors OrganismDbi GenomeInfoDb GenomicFeatures]; };
erccdashboard = derive { name="erccdashboard"; version="1.0.0"; sha256="074xif08r79b4m3hhvxc5iqfshb0d404xrvbz9jyhl11izn708py"; depends=[edgeR limma qvalue]; };
exomeCopy = derive { name="exomeCopy"; version="1.12.0"; sha256="0s0z362maqk4myh4lygcv647kd8xfvjazsx8x8fv4vprdvwkf36h"; depends=[IRanges GenomicRanges Rsamtools GenomeInfoDb]; };
exomePeak = derive { name="exomePeak"; version="1.6.0"; sha256="0vl0qx88id24fpvy9kffrq2qhyapygpk1jr6lx8p4qw456vvqiwh"; depends=[Rsamtools GenomicFeatures rtracklayer]; };
explorase = derive { name="explorase"; version="1.30.0"; sha256="1k19730ky08jxl293f74vl8n386k2ggpkf7mapq5h2y64x39v1mm"; depends=[limma]; };
fabia = derive { name="fabia"; version="2.12.0"; sha256="13709ymfdlc8xfvlqxac93znkyas56kr39gg1qb8mq5d9jdz72sb"; depends=[Biobase]; };
facopy = derive { name="facopy"; version="1.0.0"; sha256="1xkk4nbksh6bcir2n1ayvjzi12vwsg32zypcygfdl4h5kx99c4a4"; depends=[annotate DOSE GOstats graphite IRanges Rgraphviz]; };
factDesign = derive { name="factDesign"; version="1.42.0"; sha256="1kf02yh4k46xcz5csn2cz4wrifxb48wax175p9850mbk6gaw5jm8"; depends=[Biobase]; };
farms = derive { name="farms"; version="1.18.0"; sha256="03gi6lsjhchjgjc7vvbzmm2w454fia5fpb3ba9jc1w2hz22razld"; depends=[affy affy Biobase]; };
fastLiquidAssociation = derive { name="fastLiquidAssociation"; version="1.2.2"; sha256="1bq1n4hbcbpcw10sxbibc149075wx3lqhxj8npddz7m0aa4y3ma9"; depends=[LiquidAssociation]; };
fastseg = derive { name="fastseg"; version="1.12.0"; sha256="19awyg0l6bm9kqh9dlvls17vil15sngh58q15yb0yds1c7qy4ff5"; depends=[GenomicRanges Biobase IRanges BiocGenerics]; };
fdrame = derive { name="fdrame"; version="1.38.0"; sha256="1hqb6d5vc03p7fbqghyk247l72vl9ivr82zgs90h3f9h2ipq4szn"; depends=[]; };
ffpe = derive { name="ffpe"; version="1.10.0"; sha256="1x9x759dxnbfd2yhskbalgvqv6lw3mazsjgnf5wgnr4bs4s5zgql"; depends=[Biobase BiocGenerics affy lumi methylumi]; };
flagme = derive { name="flagme"; version="1.22.0"; sha256="0cs608irzag4ql0lxa34fw6y46k1vqvgg2iv1d5s2y36jmbhx202"; depends=[xcms CAMERA]; };
flipflop = derive { name="flipflop"; version="1.4.1"; sha256="1cl9p78zgpa7153b296i3azwx0f303np4cqkpmm0sb2v4sb1r4vk"; depends=[IRanges GenomicRanges]; };
flowBeads = derive { name="flowBeads"; version="1.4.0"; sha256="1azhw92jxiw2b2q046a6hlb3n0wld5ccg9m9grp4rkwsc1sabv0f"; depends=[Biobase flowCore flowCore]; };
flowBin = derive { name="flowBin"; version="1.2.0"; sha256="08qwjc4yq28r4q4y71a4x79x8razljm64xpvyhfzq7rg06aqdg5w"; depends=[flowCore flowFP limma BiocGenerics]; };
flowCHIC = derive { name="flowCHIC"; version="1.0.2"; sha256="1i8cvnbhpdk5z1k6mpaw2z7xx092x6kaqh3jz3fj14dqd6vas1g1"; depends=[flowCore EBImage]; };
flowCL = derive { name="flowCL"; version="1.4.0"; sha256="0gags4slbjgb97khcsrnzar2s3xpkck77n8ji50m0yha8h31g9m7"; depends=[Rgraphviz]; };
flowClean = derive { name="flowClean"; version="1.2.0"; sha256="1l11chqaj0in4gsj869crx9z5ib36acjq0sa5lwflzy99xd179ky"; depends=[flowCore]; };
flowClust = derive { name="flowClust"; version="3.4.11"; sha256="0v6p70m948wz5hln0fp1bq9z80vkw5xw7lqhv9lpxgwa7k0gzh8r"; depends=[Biobase graph RBGL flowViz flowCore BiocGenerics]; };
flowCore = derive { name="flowCore"; version="1.32.2"; sha256="03ykfhc8vfc4ss5dgrzi7qn6y99qn78b9j5y1fdmslsdsm81n2mq"; depends=[Biobase BiocGenerics graph]; };
flowCyBar = derive { name="flowCyBar"; version="1.2.2"; sha256="0ndpw0nh1hkpw8fis8v0850pargfrih96ybv8gi6sks3r127ji11"; depends=[]; };
flowDensity = derive { name="flowDensity"; version="1.0.0"; sha256="14z5100z8kh3xmd2dic274nfyj996dc7vhz5mjp91aifj9igjjss"; depends=[flowCore]; };
flowFP = derive { name="flowFP"; version="1.24.0"; sha256="0nbx7yh8nzjzfb1dcxzfmyhgm6f8yljqc9ngnywx1gs3gxbm6drx"; depends=[flowCore flowViz Biobase BiocGenerics flowCore flowViz]; };
flowFit = derive { name="flowFit"; version="1.4.0"; sha256="1p4k2gmjghk7xnfkkv14vbw5ambq7ik577yqyf1vfx4sqnpjp5k7"; depends=[flowCore flowViz]; };
flowFlowJo = derive { name="flowFlowJo"; version="1.24.0"; sha256="0cx1bn64gwcffzdxa3fbk2pi8bwfpbllbrgvsh4g020yqlgrnxml"; depends=[flowCore Biobase]; };
flowMap = derive { name="flowMap"; version="1.4.0"; sha256="0qfpmmi6dw3vj3kkyygl12w6r5sq5ncd9gk31hd91dhm3ph3q44l"; depends=[]; };
flowMatch = derive { name="flowMatch"; version="1.2.0"; sha256="0k3vc9b1clp65abb702402srbahgsb36lk4ii76mhz965gnss024"; depends=[flowCore Biobase]; };
flowMeans = derive { name="flowMeans"; version="1.18.0"; sha256="18nx0b889zyiihcg6lxqiqwgcg3xzw4xwdlm4q47nb564f82b52l"; depends=[Biobase flowCore]; };
flowMerge = derive { name="flowMerge"; version="2.14.0"; sha256="1kaq8l0ackcmkair4pjm94337qlig9vvl018dz0v8mhplzlsdg91"; depends=[graph flowClust Rgraphviz flowCore]; };
flowPeaks = derive { name="flowPeaks"; version="1.8.0"; sha256="1ppgxywm1hvinj45f0bxh2vj25mrq7l10yxr6ayk49vlg3filia2"; depends=[]; };
flowPhyto = derive { name="flowPhyto"; version="1.18.0"; sha256="1b55fswncz00ij4237m9ayki5hvjhv0j58xa9p4r56495cxfj8f3"; depends=[flowClust flowCore flowMeans]; };
flowPlots = derive { name="flowPlots"; version="1.14.0"; sha256="117nxr4y65bx6qrm8kg9y0afdyyj87j3m8p03s5naigbc7xl660p"; depends=[]; };
flowQ = derive { name="flowQ"; version="1.26.0"; sha256="0rrkxnhxmy18cbrafzlhkpdw2vbjv8bqrxix0xn60z6c45y7w02n"; depends=[BiocGenerics flowViz bioDist parody BiocGenerics geneplotter flowCore flowViz IRanges]; };
flowQB = derive { name="flowQB"; version="1.10.0"; sha256="11qz76h5897jwlh6ql6x8dalpzigimbkqvicr3vzh5lxnprw63kl"; depends=[Biobase flowCore]; };
flowStats = derive { name="flowStats"; version="3.24.8"; sha256="0ph3czaz1w6dsnyianp6133fwlfx9afxwv3q9ykca53sq6vblg30"; depends=[flowCore flowWorkspace BiocGenerics flowViz flowCore Biobase]; };
flowTrans = derive { name="flowTrans"; version="1.18.0"; sha256="0wivpq2hx4rr89fd85sz3qpa4g7barz3pvp91nc8h4pngj769312"; depends=[flowCore flowViz flowClust flowCore flowViz flowClust]; };
flowType = derive { name="flowType"; version="2.4.0"; sha256="0kp8nh4hd09m65kfhh0jcj9hyyak69sb6mjqhn3j81imnwr1g981"; depends=[Biobase flowCore flowMeans flowClust flowMerge]; };
flowUtils = derive { name="flowUtils"; version="1.30.0"; sha256="1cm8jh3xsbmm88p28yri47iviwd2b0pp6xh8bbgjmsgnibrsagym"; depends=[flowCore Biobase graph flowViz]; };
flowViz = derive { name="flowViz"; version="1.30.1"; sha256="1i3sm5bgp6y7y8s2gzlbckacszjcvdfx9khnqyflspw3p7pppwaq"; depends=[flowCore Biobase flowCore]; };
flowWorkspace = derive { name="flowWorkspace"; version="3.12.06"; sha256="12sk1dkxm85mgsyh41qjgzg9lyyj44250gkib00a8kl2ss37skbk"; depends=[flowCore flowViz ncdfFlow Biobase BiocGenerics graph RBGL graph Biobase Rgraphviz]; };
flowcatchR = derive { name="flowcatchR"; version="1.0.3"; sha256="0w3wnnq1snh6v59lim8av5wbg2bvs4xmd24vv3kjrs9d4v68qbwz"; depends=[EBImage BiocParallel]; };
fmcsR = derive { name="fmcsR"; version="1.8.0"; sha256="08mk2kmaxxflimfahdpfpclqyg550y9dr0p0s232l6zghp97vshr"; depends=[ChemmineR ChemmineR BiocGenerics]; };
focalCall = derive { name="focalCall"; version="1.0.0"; sha256="096wps0kcglw3vrw9rbm2abs6qpq4fbll7w67w5gi36s1mba4azn"; depends=[CGHcall]; };
frma = derive { name="frma"; version="1.18.0"; sha256="036x1q0fwyafavzs1q8hpm9ipwn3qiqn7sfkh032vphhghp8hgli"; depends=[Biobase Biobase affy oligo oligoClasses preprocessCore BiocGenerics]; };
frmaTools = derive { name="frmaTools"; version="1.18.0"; sha256="1y6lgv2cja7zz9qmid46lfj83rs3i7as9mjpgn30qmdghswrp04f"; depends=[affy Biobase preprocessCore]; };
gCMAP = derive { name="gCMAP"; version="1.10.2"; sha256="0yxczlsf1q3ibbcr668fsgya10jx6871kxpkr332yhn87zshp80s"; depends=[GSEABase limma Biobase BiocGenerics GSEAlm Category annotate genefilter AnnotationDbi]; };
gCMAPWeb = derive { name="gCMAPWeb"; version="1.6.0"; sha256="0k2g0vl0xllir75haajgqarqn19ycsqypsnwc1x66q022aq08l52"; depends=[gCMAP Biobase annotate AnnotationDbi BiocGenerics GSEABase IRanges]; };
gaga = derive { name="gaga"; version="2.12.0"; sha256="14jf02535hrf3117ih89nslz55snj8vw9vznny7nnhnlq29hqwfy"; depends=[Biobase EBarrays]; };
gage = derive { name="gage"; version="2.16.0"; sha256="19y270z9sq1q91f44013r10hms903zrhy7wx7q4i10yf7ch8zakj"; depends=[graph KEGGREST AnnotationDbi]; };
gaggle = derive { name="gaggle"; version="1.34.0"; sha256="16flb2xx4n840kmq2c5sc0j0p03gi0bz8sc3ry240nch5i15jqmx"; depends=[graph]; };
gaia = derive { name="gaia"; version="2.10.0"; sha256="18j3ws2j2nj4j30wvhgjjqvwd2dmb3qf17rsdw9hgfx2xi5c1a2a"; depends=[]; };
gaucho = derive { name="gaucho"; version="1.2.0"; sha256="024ca4709pymhja36iz5p1xaca0ihhk0i1cjs6fyllhz9s91h8zg"; depends=[graph Rgraphviz]; };
gcrma = derive { name="gcrma"; version="2.38.0"; sha256="1rv87jwqca62xgg3a14lak3am2vm3qb4cdsl0d3iqhr833pgmil3"; depends=[affy Biobase affy affyio XVector Biostrings BiocInstaller]; };
gdsfmt = derive { name="gdsfmt"; version="1.2.2"; sha256="0vk6y1ma3pxdwqnk1zv5vkc768lj65xmm49ib4zkawj5ndc71rzx"; depends=[]; };
geNetClassifier = derive { name="geNetClassifier"; version="1.6.3"; sha256="0sigqjw6xpqbdai00mwwbpzcxm0fdmqclqyjz167whkhgdyvrza8"; depends=[Biobase EBarrays minet]; };
geecc = derive { name="geecc"; version="1.0.0"; sha256="0prhm27ni2m457fmvh7n4898kkvpqkpq30cnjkd15k9hsnpag3zc"; depends=[]; };
genArise = derive { name="genArise"; version="1.42.0"; sha256="1glhv4d0x6imlqnyddq9pfd3ggzg719qm2pka3rxqjl7p2mivwsn"; depends=[]; };
geneRecommender = derive { name="geneRecommender"; version="1.38.0"; sha256="00v4sj89303izigaaq58jh2170ybf6plwzxa087sr1gfzhxgab01"; depends=[Biobase Biobase]; };
geneRxCluster = derive { name="geneRxCluster"; version="1.2.0"; sha256="0hc57j5kvv3kzgkf5y403jjdvmav1fbi9f029jkgwnsrgfn07gid"; depends=[GenomicRanges IRanges]; };
genefilter = derive { name="genefilter"; version="1.48.1"; sha256="1xlijvr11js9kxq1s1i4y4glhn5jssfczv94c7zb9mpcmf76yd9i"; depends=[AnnotationDbi annotate Biobase]; };
genefu = derive { name="genefu"; version="1.16.0"; sha256="0w1031bc11h4hf3z9fy6yp7lnwlvcasd1kmsazz8lxmjpv2pslk9"; depends=[survcomp biomaRt]; };
geneplotter = derive { name="geneplotter"; version="1.44.0"; sha256="13asb62sawiwbj2rv85ndyc07x0957i743gnrgq0r6y7shyq3xmn"; depends=[Biobase BiocGenerics annotate AnnotationDbi]; };
genoCN = derive { name="genoCN"; version="1.18.0"; sha256="01dh4z1377znp9yi6k8rq3ai0jzp7apqapx69cmd9kf4qxr39ay5"; depends=[]; };
genomeIntervals = derive { name="genomeIntervals"; version="1.22.3"; sha256="1rsvrk2l9wvji370kcyrvj97rfxh2ylrmzry3347khks46dmsc7r"; depends=[BiocGenerics]; };
genomes = derive { name="genomes"; version="2.12.0"; sha256="1ll3nnfrpb575cmra99vibsda33xc822l5mm08mldkazzg8xf0nr"; depends=[GenomicRanges IRanges Biostrings]; };
genoset = derive { name="genoset"; version="1.20.0"; sha256="13jvc5qczkkm2a4kq06pdi9pzhcskk7fp6vl8x4gvzr9srvq4ca4"; depends=[BiocGenerics Biobase GenomicRanges S4Vectors GenomeInfoDb IRanges]; };
ggbio = derive { name="ggbio"; version="1.14.0"; sha256="1pbx15f4gax3kc7crggizjasvs8h6y22qz3b7ya77cjzc5j90pb1"; depends=[BiocGenerics biovizBase Biobase S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings Rsamtools GenomicAlignments BSgenome VariantAnnotation rtracklayer GenomicFeatures OrganismDbi]; };
girafe = derive { name="girafe"; version="1.18.0"; sha256="1ipxbg07m52d82gr59b3gbmasrjqi5d9665qdzrg7jfs3vx00dqf"; depends=[BiocGenerics S4Vectors IRanges Rsamtools ShortRead genomeIntervals Biobase Biostrings BSgenome IRanges]; };
globaltest = derive { name="globaltest"; version="5.20.0"; sha256="0rpmylm3pfkbmbarga6zn3705kn9cz5cpngqj9ad6z1rgc1xxb83"; depends=[Biobase AnnotationDbi annotate multtest]; };
gmapR = derive { name="gmapR"; version="1.8.0"; sha256="02kxlfd2xnl2ki7604wy6gwf18j6x9sxfm3acraiwwyxa9n3qfkp"; depends=[GenomeInfoDb GenomicRanges S4Vectors IRanges Rsamtools rtracklayer GenomicFeatures Biostrings VariantAnnotation Biobase BSgenome GenomicAlignments BiocParallel]; };
goProfiles = derive { name="goProfiles"; version="1.28.0"; sha256="0l1n93j7zc3mzydhgykcy1ys5vljm0ka2wzld9l0i79dwcsjsap5"; depends=[Biobase AnnotationDbi]; };
goTools = derive { name="goTools"; version="1.40.0"; sha256="0b2p46r643mjbcx8q1g6qpbvb1qc2mwz9l58snilbqv214fh1khd"; depends=[AnnotationDbi]; };
goseq = derive { name="goseq"; version="1.18.0"; sha256="0srsf83nic4lqa8ab3qcsjid8djblbqgddpxih7dvykxc3yh84x1"; depends=[AnnotationDbi BiocGenerics]; };
gpls = derive { name="gpls"; version="1.38.0"; sha256="036cqbrs388snhcfg09zmrq7s5ggp45z7pbyhfhzs4g0f8kzgb2d"; depends=[]; };
gprege = derive { name="gprege"; version="1.10.0"; sha256="1bgb9q5wdl0ha1499khp0wrmckibjhgfm5p2xrygxijhd0yb0iff"; depends=[]; };
graph = derive { name="graph"; version="1.44.1"; sha256="1s8va4zn2w1rg91m7ascp03gk3cfzymjpbwb3xr6clrpbnbw8g7g"; depends=[BiocGenerics]; };
graphite = derive { name="graphite"; version="1.12.0"; sha256="1pjaf7zrrrfw5h15zk9qzpw6dh3lwfv41fk5clmg0aa1gsln7s0y"; depends=[AnnotationDbi graph]; };
groHMM = derive { name="groHMM"; version="1.0.2"; sha256="1gvb4h54hs65c7sckx4k3832698p9gppbmx4gqbspswrqf6izr2k"; depends=[S4Vectors IRanges GenomicRanges GenomicAlignments rtracklayer]; };
gwascat = derive { name="gwascat"; version="1.10.0"; sha256="1s27idaikm22yqdhnvnkilk1jm3r50h1hriswpis9gbjnfmma1kn"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges snpStats Biostrings Rsamtools rtracklayer]; };
h5vc = derive { name="h5vc"; version="2.0.6"; sha256="122s8jx03ilx9zg8yg4ir7fysyk8hq6fqz87mqjvprzhy8c1f2ip"; depends=[rhdf5 S4Vectors IRanges Biostrings Rsamtools GenomicRanges BiocParallel GenomeInfoDb]; };
hapFabia = derive { name="hapFabia"; version="1.8.0"; sha256="0zmbwyjs96zhr2qa27i9vig4vmafkkr3sl00pr90p2zs2g1m5gqj"; depends=[Biobase fabia]; };
hiAnnotator = derive { name="hiAnnotator"; version="1.0.0"; sha256="1l4kdp4ra7svjwi4zfkgsi6z363nvjr5ihs8pn9y32xyfp31swc8"; depends=[GenomicRanges rtracklayer BSgenome]; };
hiReadsProcessor = derive { name="hiReadsProcessor"; version="1.0.0"; sha256="14p37x0qbv6jgv2mb071zwn675y4nx4h4kbzsqgzdaqa0y467hd4"; depends=[Biostrings GenomicAlignments BiocParallel hiAnnotator]; };
hopach = derive { name="hopach"; version="2.26.0"; sha256="0vc1ji0n12k1q812539163n5vw99sh2z885gw9p97llr3aazr3x6"; depends=[Biobase BiocGenerics]; };
hpar = derive { name="hpar"; version="1.8.1"; sha256="10n9bnzhvnms4bj8db441hil0i4kxdmvqpf8c39xvpyq7a1brv5k"; depends=[]; };
htSeqTools = derive { name="htSeqTools"; version="1.12.0"; sha256="1wb847k7bvr5y4kc48lhwyfl6ng8r42qpaqqwccb2q5mfz5cqxzf"; depends=[BiocGenerics Biobase IRanges BSgenome GenomeInfoDb GenomicRanges]; };
hyperdraw = derive { name="hyperdraw"; version="1.18.0"; sha256="18l0lcwaki5fqw4hmf481irmikgc45a5n7h225zvh5j78ci207mj"; depends=[graph hypergraph Rgraphviz]; };
hypergraph = derive { name="hypergraph"; version="1.38.1"; sha256="05w2l5y16xrw309hsgy283qn48gn95l6c754jiwxkmn2cap8zqwp"; depends=[graph]; };
iASeq = derive { name="iASeq"; version="1.10.0"; sha256="0m1i6f0ngk94kr8wmanhf26g6pnym0lcvak82nmprdzhnkxh8y9c"; depends=[]; };
iBBiG = derive { name="iBBiG"; version="1.10.0"; sha256="0d0d0v6fn6xsm6j4p2z924sspxvs1kdf93vsn5wwgfb86rh205sk"; depends=[]; };
iBMQ = derive { name="iBMQ"; version="1.6.0"; sha256="0d6w6b276p48c65h4zk6dfzmn9i6vsam5lry9p7pyz6xzmdbx84z"; depends=[Biobase]; };
iChip = derive { name="iChip"; version="1.20.0"; sha256="13rs1j0l9nh5dir725kcbzhp6b741gn8xnv67w5pj9bmx3q1njkk"; depends=[limma]; };
iClusterPlus = derive { name="iClusterPlus"; version="1.2.0"; sha256="1f4hg8phzza2dlw7svabbpxwyjplc3xxzzd267axvq4pkxyz7f5z"; depends=[]; };
iPAC = derive { name="iPAC"; version="1.10.0"; sha256="0dav5mrfk9gy07lavf2f7am78zb3jcy4scbglajr7bf212v16awj"; depends=[Biostrings multtest]; };
iSeq = derive { name="iSeq"; version="1.18.0"; sha256="14pdjh6i0xr6ihy7jz30prwv2s9q5wib8d5s1crpk72bz9dqbn59"; depends=[]; };
ibh = derive { name="ibh"; version="1.14.0"; sha256="05kiqbfkd6a865y7ckn2hv3kagyab91i57f27327b42hqzi3v7dy"; depends=[]; };
idiogram = derive { name="idiogram"; version="1.42.0"; sha256="1k257rdqxqa8mncdanzjy5vcmp7l3jzfzr5sbcpr1fml30jpljmh"; depends=[Biobase annotate]; };
illuminaio = derive { name="illuminaio"; version="0.8.0"; sha256="17lcdl401xcf4dc8rs3nz9nrycrvyq1smdk73v4g07mj1mkydbyg"; depends=[]; };
imageHTS = derive { name="imageHTS"; version="1.16.0"; sha256="0iq1mhr9ic5hwrylb9ffblk5rfm8vkqvzi4wj69dga5khc3bvi7x"; depends=[EBImage cellHTS2 Biobase vsn]; };
impute = derive { name="impute"; version="1.40.0"; sha256="0m4wfrgax6hxjwb6fgyn9dh0z3vnj1pqwgafyp7ic0ifd3zn7nbg"; depends=[]; };
inSilicoDb = derive { name="inSilicoDb"; version="2.2.1"; sha256="1c4kkcljwvl1xaxr8i23zvf6m73bbs4yydw3rvimbn39a55dp26g"; depends=[Biobase]; };
inSilicoMerging = derive { name="inSilicoMerging"; version="1.10.1"; sha256="0c73zrxnbpixlmdx24rqrhv7h03agk3ckss64wr03r8zc1z6wrd8"; depends=[Biobase]; };
intansv = derive { name="intansv"; version="1.6.2"; sha256="11zvsgpyl712qdjz8mfkbyl4d09f6lb0wbnr3c50crw76flhp5m2"; depends=[ggbio GenomicRanges BiocGenerics IRanges]; };
interactiveDisplay = derive { name="interactiveDisplay"; version="1.4.1"; sha256="14mpww5ijwlkdyl3hxdyd95zik0s5vrb1dmhdpfhcbd18xj6gkcs"; depends=[BiocGenerics interactiveDisplayBase Category AnnotationDbi]; };
interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.4.0"; sha256="0ahd8ja8f6d7lcn6kz9wm8g7ly5ngda8zva44120r6df3n6ij2dg"; depends=[BiocGenerics]; };
inveRsion = derive { name="inveRsion"; version="1.14.0"; sha256="1zmb0h949sc9xvyc3qjc8xhg1iq9lpff3h98zn6zq4lr9hv542w3"; depends=[]; };
iontree = derive { name="iontree"; version="1.12.0"; sha256="1z62n0y2x569s5f3dxrbya70sbx5zjfhv17awnzw4bxsl2iwdlsw"; depends=[]; };
isobar = derive { name="isobar"; version="1.12.2"; sha256="1paxykz7b400cxmdbwh0xw3crvlrd63i612w1bkm8n5d508wij8k"; depends=[Biobase]; };
iterativeBMA = derive { name="iterativeBMA"; version="1.24.0"; sha256="14ri5m9lk77w5clsh0jsidsx8xwxizky5mrvhk136x20pd13vp8n"; depends=[Biobase]; };
iterativeBMAsurv = derive { name="iterativeBMAsurv"; version="1.24.0"; sha256="0wg07ass90ha2z460vddlchw2vjcn6sfzmrwfdjak1b9cckhgg7f"; depends=[]; };
jmosaics = derive { name="jmosaics"; version="1.6.0"; sha256="1kif1ms3v4askg9sf43fgrw8flxpzp36a7pwflnbfg035xkjdwgn"; depends=[mosaics]; };
joda = derive { name="joda"; version="1.14.0"; sha256="09xyk761825hpjpffv2d6bmj8snprm9k8fdaslyh4clx0r9nsm13"; depends=[RBGL]; };
kebabs = derive { name="kebabs"; version="1.0.5"; sha256="0jphbpbv5r8s0q4f985yvrckjx58g94nw9mccqfsrjlz2ka8kpls"; depends=[Biostrings XVector S4Vectors IRanges XVector Biostrings S4Vectors]; };
keggorthology = derive { name="keggorthology"; version="2.18.0"; sha256="0iwwp3zv94ci89l1wd19l4ryjlggq9naairzsifrajnq3ivq07fg"; depends=[graph AnnotationDbi graph graph]; };
lapmix = derive { name="lapmix"; version="1.32.0"; sha256="16gqhmyd5yl2myk9b7dad9mr3agxh5a1hgd2xdszrnya61r7kvnw"; depends=[Biobase]; };
les = derive { name="les"; version="1.16.0"; sha256="1g7hqm61z66qf6cw5dl8xc0ndw7hak2034kc2zdp2i7gl5ww8iad"; depends=[]; };
limma = derive { name="limma"; version="3.22.7"; sha256="0qa5kfph80j4ykngaj300bkvk464chpnlsaffqwnv0g70r1af7hy"; depends=[]; };
limmaGUI = derive { name="limmaGUI"; version="1.42.0"; sha256="0236bmwxdppgpw0fb4sw8wg16k2pijzxm8a6qy2kxd3a77ci034k"; depends=[limma]; };
lmdme = derive { name="lmdme"; version="1.8.0"; sha256="0pidyb48ranx4a9k6zk69sh5dd51q81wig1h5qbv1irsdjrl5k51"; depends=[limma]; };
logicFS = derive { name="logicFS"; version="1.36.0"; sha256="0hyqfcb3lz0ylgf21mklwam2w7vrii2k0bsazwx02kp1z918qzax"; depends=[]; };
logitT = derive { name="logitT"; version="1.24.0"; sha256="09b7wk51hbvfhvmvwfqjd194ywgqyp728nvwbi44ln04v4d1834h"; depends=[affy]; };
lol = derive { name="lol"; version="1.14.0"; sha256="0y78yfbyjy40cybqyxhfsg3ay9kacv75a7xi71npkqii04f7cszq"; depends=[]; };
lpNet = derive { name="lpNet"; version="1.6.0"; sha256="1qk4v6wq01218r17a1daj7h9jsb9i7l867r2m4ry0bjgnz2h6lk2"; depends=[nem]; };
lumi = derive { name="lumi"; version="2.18.0"; sha256="1f0fcz7vlkc062fn248hgx3p1msz3hna34aa0g1gcnv51rxb5him"; depends=[Biobase affy methylumi GenomicFeatures GenomicRanges annotate Biobase preprocessCore AnnotationDbi]; };
mBPCR = derive { name="mBPCR"; version="1.20.0"; sha256="1l7ybvnh00grfjdvpn45ns8kg6jfs8hn7z4ijyghzmm70w9527xk"; depends=[oligoClasses SNPchip Biobase]; };
mQTL_NMR = derive { name="mQTL.NMR"; version="1.0.0"; sha256="0dbpkbgbpzv8vzmgcs4s3ppfwy88aj79cd3cnf18jqg43b56w4fi"; depends=[]; };
maCorrPlot = derive { name="maCorrPlot"; version="1.36.0"; sha256="12k4f427xipcbhz6ffv25rxpk799vpv2g15lpj15pmjpspi43q10"; depends=[]; };
maPredictDSC = derive { name="maPredictDSC"; version="1.4.0"; sha256="1bnkfpicb3pfr2rymnwc5n56zk1fyzhg58b823xdjpdv3p4d806h"; depends=[affy limma gcrma ROC AnnotationDbi]; };
maSigPro = derive { name="maSigPro"; version="1.38.0"; sha256="1pk8mnzvrsp0x229r91xdx0f7v18dizw2pjkhyh3xblx4mgbryyh"; depends=[Biobase Biobase limma Mfuzz]; };
maanova = derive { name="maanova"; version="1.36.0"; sha256="0ygwzxl89rng52vf4ai41mbsn0yiv580l0xfwykqai81qjk97kgy"; depends=[Biobase]; };
macat = derive { name="macat"; version="1.40.0"; sha256="14azwx7719wqi4n4k17y90w3ypcz8kmmkf25lwgf1mx8jpqdfnn6"; depends=[Biobase annotate]; };
made4 = derive { name="made4"; version="1.40.0"; sha256="1hxaz11k0kcidm9krf9a63hhxkcrk9g3lrljd1bphj6kwjs0zyfg"; depends=[]; };
maigesPack = derive { name="maigesPack"; version="1.30.0"; sha256="0dmxikyw045b0q6vkq7l5rh6rkvjzjjrppi07yx2849hvd78sv74"; depends=[convert graph limma marray]; };
makecdfenv = derive { name="makecdfenv"; version="1.42.0"; sha256="1z0p3piyaj8577hmvmainng3csbcwszk4mijdbw5i6pzv4j7qlzc"; depends=[affyio Biobase affy zlibbioc]; };
manta = derive { name="manta"; version="1.12.0"; sha256="0kkfdvd6b1fz289di5h3pbnh5lm6ixcg0vdancxrqh23xcmzn020"; depends=[edgeR]; };
marray = derive { name="marray"; version="1.44.0"; sha256="1cg2qkg2pyf2vy9j2c2iw2z3mppmz7hvknm207dky594sh38azsm"; depends=[limma]; };
maskBAD = derive { name="maskBAD"; version="1.10.0"; sha256="02dy1y7z0s2g3kp5dn5scrvqfwbdp57fyrc85bb576ncbckd89gl"; depends=[gcrma affy]; };
massiR = derive { name="massiR"; version="1.2.0"; sha256="0x7ip2w8vrh0pa5rw8s53a7kmb4aixmd32y1y9vwm8q19p1fn91c"; depends=[Biobase]; };
matchBox = derive { name="matchBox"; version="1.8.0"; sha256="1g44cbac3k4d5krpi93nrxk3w43sihfblnji5hknavny7z2k57k1"; depends=[]; };
mcaGUI = derive { name="mcaGUI"; version="1.14.0"; sha256="188zganyc5wqm87nk160w6zhrzwjxs3mpiin17mr13kr609cs03j"; depends=[OTUbase]; };
mdqc = derive { name="mdqc"; version="1.28.0"; sha256="06bb1il2r9pfnnja6nmdx1k7pq827xnnr67q6l3k262rj3j0nfk2"; depends=[]; };
meshr = derive { name="meshr"; version="1.2.7"; sha256="014lj15kk2aq49hys0cdrxr7c6psxpah91jbwkw9mk57s0vw3fja"; depends=[Category BiocGenerics cummeRbund MeSHDbi S4Vectors]; };
messina = derive { name="messina"; version="1.2.0"; sha256="054hznxclhv9b9inis2xc0y1028hqc9fwl15z0hrqld9z4jsl5vc"; depends=[]; };
metaArray = derive { name="metaArray"; version="1.44.0"; sha256="0nbvz094xgm4k25z77d1frq72mjdy9ck2a8fy2zkb97gpnsii10h"; depends=[Biobase MergeMaid]; };
metaMS = derive { name="metaMS"; version="1.2.0"; sha256="0137zd25mr0pwclbnnf06si79ja1kn0czfw698cnd38fjkz300sg"; depends=[CAMERA xcms BiocGenerics]; };
metaSeq = derive { name="metaSeq"; version="1.6.0"; sha256="04yfs1zhd35w9zjn71cnm9avc5rhqkg8jymgsra1slgrdhwwly7m"; depends=[NOISeq]; };
metabomxtr = derive { name="metabomxtr"; version="1.0.0"; sha256="0wr2qyh57r9c0pdbjrkri72zjxjm3vjdh6ny1srwjrgx5hfa9nr7"; depends=[Biobase multtest]; };
metagene = derive { name="metagene"; version="1.0.0"; sha256="1b2nqyis5cl7z16ql0ix9wyh9lcbnxhx26sz3wgrxwxwrq5gy64g"; depends=[rtracklayer GenomicRanges GenomicAlignments]; };
metagenomeSeq = derive { name="metagenomeSeq"; version="1.8.3"; sha256="16j5g3yb184giygbfrb96ggal8y44b40g7771g9bgfzr950dq9wc"; depends=[Biobase limma interactiveDisplay]; };
metahdep = derive { name="metahdep"; version="1.24.0"; sha256="13w25dailvl4y4vzb66vkyzzgswy10izapicf41f2w4qqwp1swc9"; depends=[]; };
metaseqR = derive { name="metaseqR"; version="1.4.13"; sha256="14sbagw7jkv56569z438y0vsph104hryb825ih4wsk1ngrgnk7zg"; depends=[EDASeq DESeq limma qvalue edgeR NOISeq baySeq biomaRt vsn]; };
methVisual = derive { name="methVisual"; version="1.18.0"; sha256="0mr5rymx9x4aav2lvfjxmm5zc47xfgmysnh5lvgx30fpsf1gsa2m"; depends=[Biostrings Biostrings IRanges]; };
methyAnalysis = derive { name="methyAnalysis"; version="1.8.0"; sha256="1ygj9j2b0g052n7vv1qypv9ffmxfc3dpwmxmdqs8gq7gdz9h36yn"; depends=[BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biobase lumi methylumi Gviz genoset GenomicRanges IRanges rtracklayer GenomicFeatures annotate Biobase AnnotationDbi genefilter biomaRt]; };
methylMnM = derive { name="methylMnM"; version="1.4.0"; sha256="10p4jhqq0116grwcwf28jxgn59c66bkwcqvxy11mrw6533dbnfp5"; depends=[edgeR]; };
methylPipe = derive { name="methylPipe"; version="1.0.5"; sha256="0z3xkrzpkgdl7cjam9mirm8gqwc69gicprlw2vgphzdc491dbx1y"; depends=[GenomicRanges Rsamtools marray IRanges BiocGenerics Gviz GenomicAlignments Biostrings GenomeInfoDb S4Vectors]; };
methylumi = derive { name="methylumi"; version="2.12.0"; sha256="0mcg985g3nw8cbjffagdsjn1an0z61jzl7w24zzhy4mbscjj0b6h"; depends=[Biobase minfi BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biobase annotate genefilter AnnotationDbi minfi illuminaio]; };
mgsa = derive { name="mgsa"; version="1.14.2"; sha256="16x4s22r6qyirrm78260i59lzx5mknfirjg09dhw56w431ibra9b"; depends=[]; };
miRNApath = derive { name="miRNApath"; version="1.26.0"; sha256="0lpr2id012wdh3zkla6xpyfxsy068zzbldfwj24hclzxqiwhqkgd"; depends=[]; };
miRNAtap = derive { name="miRNAtap"; version="1.0.0"; sha256="1w2ivqkndnmq9h2h9nx0wcwg7hppiyskgrvmmsy36q3dy96nvis1"; depends=[AnnotationDbi]; };
microRNA = derive { name="microRNA"; version="1.24.0"; sha256="187xjq2fy9zgvx82q47rvywrsc0260vlzyi79zd48ayyr8wi2q5s"; depends=[Biostrings]; };
minet = derive { name="minet"; version="3.24.0"; sha256="126yhbn98048ahnmcc7v8pgk9c2fa669fw84zq4819zq027dqk07"; depends=[]; };
minfi = derive { name="minfi"; version="1.12.0"; sha256="0cz59qcbg6bi7l4kzsdx1jrlwfr720ahpc5f3qap8j5bdhsgjr0i"; depends=[BiocGenerics Biobase GenomicRanges Biostrings bumphunter S4Vectors IRanges siggenes limma preprocessCore illuminaio genefilter]; };
missMethyl = derive { name="missMethyl"; version="1.0.0"; sha256="054y75q7dlwnrbrx68kjpj9pdb5wx9nhrg3ch8kxfi6kcbymyibk"; depends=[limma minfi methylumi]; };
mitoODE = derive { name="mitoODE"; version="1.4.0"; sha256="1xaxf61vlfcx02sigmplayak0kc35s3301l42f3lap9236qmiikl"; depends=[]; };
mmnet = derive { name="mmnet"; version="1.4.0"; sha256="1brgl3bnxja3z8wrny9d53ir7yk8qsdl02dr46055spck5p5ngkd"; depends=[Biobase KEGGREST]; };
monocle = derive { name="monocle"; version="1.0.0"; sha256="07i77c7hicfd00b8y0y6gkd6ffach0s67awl69q3xzjlvhv6yq5b"; depends=[Biobase BiocGenerics limma]; };
mosaics = derive { name="mosaics"; version="2.0.1"; sha256="0gmhlg34vhdzn9dg5g8l1xndrs54c4ijwi5b5hvnij09wagi4557"; depends=[IRanges]; };
motifRG = derive { name="motifRG"; version="1.10.0"; sha256="1bsj18j0cnj31njy5l4n6dwxxxdbv1xyqjn5v9ql8whya6rq4s2j"; depends=[Biostrings IRanges seqLogo BSgenome XVector IRanges seqLogo XVector]; };
motifStack = derive { name="motifStack"; version="1.10.2"; sha256="1ypy92cbdw4iksf0ivxqk7jnz91cmm3n48qsh8b9gbc72wrdw45r"; depends=[MotIV]; };
msmsEDA = derive { name="msmsEDA"; version="1.4.0"; sha256="1s4gahc6n973d76vdz9hk5wiqs6d28xfm1jzvh0pw40igx475l2b"; depends=[MSnbase]; };
msmsTests = derive { name="msmsTests"; version="1.4.0"; sha256="19dfzvq1kdiwchijs9z367cggrvgh6f45kdn4585qn65pyii0fva"; depends=[MSnbase msmsEDA edgeR qvalue]; };
multiscan = derive { name="multiscan"; version="1.26.0"; sha256="027ccaqmf84bkbjy9j5jq91pjx3b3cycn6fbyjc2w0f7prcx394q"; depends=[Biobase]; };
multtest = derive { name="multtest"; version="2.22.0"; sha256="1kcz6h91qz0n0vi7dphw6rdzy1i1c0xd41q4bgqhmg0mi44m0k78"; depends=[Biobase]; };
mvGST = derive { name="mvGST"; version="1.0.0"; sha256="0p6msfkj5qa29b0g3p87wcryn0gq9vfhcc3y8rx2j1f01qb1raif"; depends=[Rgraphviz topGO GOstats annotate AnnotationDbi graph]; };
mygene = derive { name="mygene"; version="1.0.1"; sha256="1i085n7af6lx8ymrglzfv5bwnsz4rvyk47hws9xhhriydrniwiq3"; depends=[GenomicFeatures S4Vectors]; };
mzID = derive { name="mzID"; version="1.4.1"; sha256="1ijyr2s4g1hvrs719sj3ylckdgaar8v5aal62kajmc8zjwhc6pd0"; depends=[]; };
mzR = derive { name="mzR"; version="2.0.0"; sha256="0djvbgsz9y0qy91c6r8hlkdy0a95nmncakapn0s04lzqhjj2azkq"; depends=[Biobase]; };
ncdfFlow = derive { name="ncdfFlow"; version="2.12.0"; sha256="0r4q4ydaqlrsan8a3k60bjrzqvm37s308k3fz9lvqvdk3c5hichz"; depends=[flowCore flowViz Biobase flowCore flowViz zlibbioc]; };
neaGUI = derive { name="neaGUI"; version="1.4.0"; sha256="0l0v5jb4m7hxmdmkhm52gbw8c0vsgi4y3mkd0ygja9kp7half10h"; depends=[]; };
nem = derive { name="nem"; version="2.40.0"; sha256="19mmvbg52vk6i5wy0kqpm460w7q9fsp1gwyjmqfhwd5jicxpp14k"; depends=[graph limma Rgraphviz graph RBGL Rgraphviz]; };
netbiov = derive { name="netbiov"; version="1.0.0"; sha256="1zging9jh417z8fyv7z3bdbf44agnx5lqih0sizyvv6wccz0jm30"; depends=[]; };
netresponse = derive { name="netresponse"; version="1.16.0"; sha256="1ngj2v85rfm1hbd5xsvl05z28xjdf5j4pd2fm4p0ch6i8ar3wzzd"; depends=[graph minet qvalue Rgraphviz]; };
networkBMA = derive { name="networkBMA"; version="1.8.0"; sha256="00k3z1fsm32i6kgzxg6cydylxg849gxdrs8zy6923y26742ysi8s"; depends=[]; };
nnNorm = derive { name="nnNorm"; version="2.30.0"; sha256="13wxpgkd90giqx3hlsl8hsk2vd2n3w1522sks82rz7663ixbfill"; depends=[marray marray]; };
nondetects = derive { name="nondetects"; version="1.2.0"; sha256="1jhdqvjzw8hsr6ql82hv443qh36mnwkmwgygirlgn48rs0j289y0"; depends=[Biobase HTqPCR]; };
npGSEA = derive { name="npGSEA"; version="1.2.0"; sha256="19kk2c81cwfcv0z0qd5jm0k0kr1q7nxj1givk26m32mrqh7rm4zk"; depends=[GSEABase Biobase BiocGenerics]; };
nucleR = derive { name="nucleR"; version="1.14.0"; sha256="1wjffdi4vx00rsxs8dzcamz5n9ramgcl8j228rwq1ag1vp836jg6"; depends=[BiocGenerics IRanges Biobase ShortRead BiocGenerics S4Vectors IRanges Biobase ShortRead GenomicRanges]; };
nudge = derive { name="nudge"; version="1.32.0"; sha256="1h0zjy1x4papcwwwwymkpaig6wkh5wp7asw4qpgw9g9xajdg4gcq"; depends=[]; };
occugene = derive { name="occugene"; version="1.26.0"; sha256="122if8jvyiw7384s4g3z95b2bs4sijjhq0yzk8b62i7j9dv8m11b"; depends=[]; };
oligo = derive { name="oligo"; version="1.30.0"; sha256="0djadgk5la3wdd2scvk6v45y3a25ffwq220n3kjivcgnj529f83a"; depends=[BiocGenerics oligoClasses Biobase Biostrings affyio affxparser BiocGenerics preprocessCore zlibbioc preprocessCore]; };
oligoClasses = derive { name="oligoClasses"; version="1.28.0"; sha256="0dgplhks2miidfiviz122rw7chxcm14hpizbhcf6l9r1r7wrd69r"; depends=[BiocGenerics Biobase IRanges GenomicRanges Biostrings affyio BiocInstaller S4Vectors]; };
omicade4 = derive { name="omicade4"; version="1.6.2"; sha256="1zmzl78sr9hj04azyrncfh1rsf5lb5v0wfkls35qmcxb18sp4178"; depends=[made4]; };
oneChannelGUI = derive { name="oneChannelGUI"; version="1.32.0"; sha256="002jj674jqjqpqg7q4dqfwv0lmbp1bgkvljjp78jgy5rhjvpy10c"; depends=[Biobase affylmGUI tkWidgets IRanges Rsamtools Biostrings siggenes chimera]; };
ontoCAT = derive { name="ontoCAT"; version="1.18.0"; sha256="0xq2vd3lkavnwj9da1hkamhyvxr46ysl2mh9xa6j2c13a6yq3p4c"; depends=[]; };
openCyto = derive { name="openCyto"; version="1.4.0"; sha256="0nzfb2xhypl8kscsaznx8i3gf1fyd71p6x84zfvqx98wi5vpsswj"; depends=[flowWorkspace Biobase flowCore flowViz ncdfFlow flowStats flowClust RBGL graph]; };
oposSOM = derive { name="oposSOM"; version="1.1.1"; sha256="0q9j67gpik4i8n485cbn96wi4svbcl3v69fvqgvrv4byjwzn02pp"; depends=[biomaRt Biobase]; };
pRoloc = derive { name="pRoloc"; version="1.6.2"; sha256="1r80fyfhpjq36gf8cwwrh8zikp9yvdfnpwwq6yf5155k4090269h"; depends=[MSnbase MLInterfaces BiocParallel BiocGenerics]; };
pRolocGUI = derive { name="pRolocGUI"; version="1.0.2"; sha256="1q5nzi89408vsls1k59j8i9dfkx9dfmi7k01dm1c17qvi977a1mb"; depends=[pRoloc MSnbase]; };
paircompviz = derive { name="paircompviz"; version="1.4.0"; sha256="0l9jifzazrl3wchrgn6q4cj088gjghabrzh0118g73hm5y2rjq51"; depends=[Rgraphviz Rgraphviz]; };
panp = derive { name="panp"; version="1.36.0"; sha256="0yyghljg81s5f9fwj24hlhgl7i4a15ia662cqhb6l6im8ghssxrl"; depends=[affy Biobase Biobase]; };
parody = derive { name="parody"; version="1.24.0"; sha256="1y36abd3l8xaqd7aaf1sfi1ylqqvyns6in8i7j2kswgjjv89k4wr"; depends=[]; };
pathRender = derive { name="pathRender"; version="1.34.0"; sha256="0giwl6inrs0krk7qnri23g8xyf06x8knqh83p4cpzagg8rfbkpzc"; depends=[graph Rgraphviz AnnotationDbi]; };
pathifier = derive { name="pathifier"; version="1.4.0"; sha256="1xm9rjpk1ngapl2kni5bn5z4fg19rnbi41dvv784flmzy87iwhjl"; depends=[]; };
pathview = derive { name="pathview"; version="1.6.0"; sha256="1bfr20rad6qrvaid8y0n167x7d6ixi1k3dclq919473v7pzzqq65"; depends=[KEGGgraph Rgraphviz graph AnnotationDbi KEGGREST]; };
paxtoolsr = derive { name="paxtoolsr"; version="1.2.11"; sha256="1b8197cd0c5i0r9d85v2x0mw8yz3l74skg9jj0lh1h56hwpxfnb1"; depends=[]; };
pcaGoPromoter = derive { name="pcaGoPromoter"; version="1.10.0"; sha256="03h1fpj7iaaz6b9y7zwpn9nhgyhg8r39iw0vnhmmlsyg5g4zrlza"; depends=[Biobase AnnotationDbi]; };
pcaMethods = derive { name="pcaMethods"; version="1.56.0"; sha256="112wm1qr1bczn18k854ja8029rz4sxnxgvlksjjpxswxliwfldkn"; depends=[Biobase BiocGenerics]; };
pcot2 = derive { name="pcot2"; version="1.34.0"; sha256="0v6350d9inmfvbiyagqb2wpp6pfirnwrm9hq53g0yg9igyd4q4nl"; depends=[Biobase]; };
pdInfoBuilder = derive { name="pdInfoBuilder"; version="1.30.6"; sha256="0ydzwbkjzmm5dh70vwbdiw2kmd4cmnvfwpqa65fmblbpdg73618w"; depends=[Biobase affxparser oligo Biostrings BiocGenerics IRanges oligoClasses S4Vectors]; };
pdmclass = derive { name="pdmclass"; version="1.38.0"; sha256="0lk7y8i24mbajp4lln07q61pnbmsn6mpajb09zfvrf7qgklm64hz"; depends=[Biobase]; };
pepStat = derive { name="pepStat"; version="1.0.0"; sha256="1r3hvhxwd85mkjw4f2hwygvffppsbay3ghj7rmy9jkaayfz2px49"; depends=[Biobase IRanges limma GenomicRanges]; };
pepXMLTab = derive { name="pepXMLTab"; version="1.0.0"; sha256="0pxy5hhg3vb2zph484c8hm7066dnfp7303n7zbaviszykcxmw9h6"; depends=[]; };
phenoDist = derive { name="phenoDist"; version="1.14.0"; sha256="0vr2mv4swk102kl7vq3mj6xxl1z0v45shd0wrhs9zg1pklbd851j"; depends=[imageHTS]; };
phenoTest = derive { name="phenoTest"; version="1.14.0"; sha256="19qgcpd28frnhcx10lsrxg885b6f9l6qfwlyzkp3x875p62xy942"; depends=[Biobase annotate Heatplus limma Category AnnotationDbi hopach biomaRt GSEABase genefilter annotate SNPchip HTSanalyzeR]; };
phyloseq = derive { name="phyloseq"; version="1.10.0"; sha256="1whwm1wm9fhxsz54vqf2r32bmgg3c9smvrpnzmvz9gigygvv5cyl"; depends=[Biostrings DESeq2 multtest]; };
piano = derive { name="piano"; version="1.6.2"; sha256="00qbcgzafila8idbfxvdnssx5161rn1xhnh3w1fp8sqlw5d1v6xz"; depends=[Biobase marray]; };
pickgene = derive { name="pickgene"; version="1.38.0"; sha256="1pzr3l2h9rfywl7a20ppyaggzrvlr0as3bl4ys451khwnm1abwcf"; depends=[]; };
pint = derive { name="pint"; version="1.16.0"; sha256="1vlrblp4i4qd0lpbphz0l6hpsyl88pc1qrr6kk8v62bw0a0bsdf9"; depends=[]; };
pkgDepTools = derive { name="pkgDepTools"; version="1.32.0"; sha256="1fh52j5lrvbvm05bv67swdxckjys74v5ikqjv9ln2a30pxp0vs6a"; depends=[graph RBGL graph RBGL]; };
plateCore = derive { name="plateCore"; version="1.24.0"; sha256="0gqv0wqd93q4c2sgjic109i9a59z63hbqilc4a7c80krsada80sc"; depends=[flowCore flowViz Biobase flowCore flowStats]; };
plethy = derive { name="plethy"; version="1.4.3"; sha256="16xff9y274lf0hpjzfqxl94xbl5prk7gbjh23ysb0jl8hszjc9i8"; depends=[BiocGenerics S4Vectors Streamer IRanges]; };
plgem = derive { name="plgem"; version="1.38.0"; sha256="1wsianyvwhiwpm3ip2la3a78jj9cvj07l9nipmjk84nlk5wpvw9k"; depends=[Biobase]; };
plier = derive { name="plier"; version="1.36.0"; sha256="0qr4v2lazvl3bnqdjd1jnbfh4z9jbkqr2bbs4wc1r7rps4gxib3y"; depends=[affy Biobase]; };
plrs = derive { name="plrs"; version="1.6.0"; sha256="03pwcv8vx1rdx85z3a60p7g53lmg1qdwmbkmnsx6fjc0hnvxvx6w"; depends=[Biobase BiocGenerics CGHbase marray]; };
plw = derive { name="plw"; version="1.26.0"; sha256="0mb35ql57gl0nhdcwbcj2fwbanm8gv0rpgjbcc1mrw82d7ffj94i"; depends=[affy affy]; };
polyester = derive { name="polyester"; version="1.0.2"; sha256="0mv25jgdfw74f1y68zz292qx27ar6w2413nml4nipfpv6krh37vm"; depends=[Biostrings IRanges S4Vectors]; };
ppiStats = derive { name="ppiStats"; version="1.32.0"; sha256="1hjzcc9g9bszn9h24wr7v3vj8ili0z1dpgbk8pkf209iyjv7l9mz"; depends=[ScISI Biobase Category graph]; };
prada = derive { name="prada"; version="1.42.0"; sha256="1yw2lzs7bdi7fb5hfy6jq3br1hzc9by4vv16vrnhm7v41nsi7y1a"; depends=[Biobase Biobase BiocGenerics]; };
prebs = derive { name="prebs"; version="1.6.0"; sha256="12fyiz7mmxvmwwxkf2l0yypmsm8wlyvdpbxlcs0ip82mcya4kfgs"; depends=[GenomicAlignments affy GenomicRanges IRanges]; };
predictionet = derive { name="predictionet"; version="1.12.0"; sha256="1smz1zcaivd28y59qxp34r9b04jxar3ldsvx4kbfn70axwvwhcsq"; depends=[RBGL]; };
preprocessCore = derive { name="preprocessCore"; version="1.28.0"; sha256="0bbsnid3bdbpaxdww1zxp34sj95fhkgxlsjggpw46kdzryf01j84"; depends=[]; };
proBAMr = derive { name="proBAMr"; version="1.0.1"; sha256="11fgl1w0nhfdnk3fm2x5d1749w82i1jj76nazsifsd087wf0hl3l"; depends=[IRanges AnnotationDbi GenomicRanges Biostrings GenomicFeatures rtracklayer]; };
procoil = derive { name="procoil"; version="1.16.0"; sha256="18bifg3sf0jwm2c4gzc632qnl8b27qn48jpw5cx5gk1cwqmwjh6z"; depends=[]; };
prot2D = derive { name="prot2D"; version="1.4.0"; sha256="0plsndlbrq8pyx0b4r3xn7qakk78kdlhx776jmd2sx5x2bqc53z4"; depends=[Biobase limma Mulcom impute qvalue]; };
proteinProfiles = derive { name="proteinProfiles"; version="1.6.0"; sha256="1cvwqgxgn87bj2shag7sqz9xkp83qzqvx2x34jacndg3ypjakhwx"; depends=[]; };
proteoQC = derive { name="proteoQC"; version="1.2.0"; sha256="05chpx2brp7snfgzc6xqp88mla463389cs0mdgb8159v86qy76dw"; depends=[MSnbase rTANDEM]; };
puma = derive { name="puma"; version="3.8.0"; sha256="00q69f16mp40h623lgxqxj9xgfcfkz6551dgmiv0mckcparyl2xa"; depends=[Biobase affy oligo Biobase affy affyio]; };
pvac = derive { name="pvac"; version="1.14.0"; sha256="05jmvv4c71gsavsdnkzskldhlg9yprgvfavah3ik9mvsldk6cqqy"; depends=[affy Biobase]; };
pvca = derive { name="pvca"; version="1.6.0"; sha256="1kbb5vwff8wxq5j3cikgpibi2n2d9v97z7gm28yzc63ymyvl9ngn"; depends=[Biobase vsn]; };
qcmetrics = derive { name="qcmetrics"; version="1.4.1"; sha256="1r5qs19fgwryjqyf9wsdn0lkyb2hisn3akp87qhc9rs8rf9w469w"; depends=[Biobase S4Vectors]; };
qpcrNorm = derive { name="qpcrNorm"; version="1.24.0"; sha256="1db7w2w0ss1xx990h5xp6354xfyjdb5r5898zz2i2sgn0l2k5fpc"; depends=[Biobase limma affy]; };
qpgraph = derive { name="qpgraph"; version="2.0.5"; sha256="188v0bpgd5a7c0gby8vzljfagl8k3gynyv7c9a96miyyl0qlxn0s"; depends=[annotate graph Biobase S4Vectors BiocParallel AnnotationDbi IRanges GenomeInfoDb GenomicRanges GenomicFeatures Rgraphviz]; };
qrqc = derive { name="qrqc"; version="1.20.0"; sha256="1phmcd4a097h9jj8c8cqwvvgg10cc5cvn7b1ghylh1ddp5npxz4c"; depends=[Biostrings biovizBase Rsamtools Biostrings biovizBase Rsamtools]; };
quantro = derive { name="quantro"; version="1.0.0"; sha256="0cqs7vigv7yfamwq8jjs61xxlq8c3kl3gc5sd4y8382j1rdcipjk"; depends=[Biobase minfi]; };
quantsmooth = derive { name="quantsmooth"; version="1.32.0"; sha256="1q66x7kw2pmm81xifb49agl4akgprfjwlhsa692bwprvi9vq6z73"; depends=[]; };
qusage = derive { name="qusage"; version="1.6.0"; sha256="16c5rrvqz784m49556h9six1p7r7mxfjwmms6lz416r9cvjg9khh"; depends=[limma Biobase]; };
qvalue = derive { name="qvalue"; version="1.43.0"; sha256="169cfpwgq4lpapipwrc6yczfxgc9wczq47xf2vzl7wdp8arrblqz"; depends=[]; };
r3Cseq = derive { name="r3Cseq"; version="1.12.1"; sha256="0df52ccial9axnpmawap3pfvmjdgnl8pfvcgjwyvddrg2xbi8n32"; depends=[Rsamtools rtracklayer qvalue]; };
rBiopaxParser = derive { name="rBiopaxParser"; version="2.4.0"; sha256="0jcwf7a24w5ccm93fwqcvlbp54k18v68dnalqbr5dqb9jl6ncfzy"; depends=[]; };
rGADEM = derive { name="rGADEM"; version="2.14.0"; sha256="0303nl790qvay6qdh45acc3yvw8hxw2gy7lsxmnl5gn3sk23cbnh"; depends=[Biostrings IRanges BSgenome seqLogo Biostrings IRanges seqLogo]; };
rHVDM = derive { name="rHVDM"; version="1.32.0"; sha256="151pcx2dnfplkpdhxmvfd8dl0dkaggy96fi5h1zkgbzjggn6ig07"; depends=[affy Biobase]; };
rMAT = derive { name="rMAT"; version="3.16.0"; sha256="0vad1qhslvqcvva78i7isxmd9llcwn06vjhvayk2a6f38hfd4m69"; depends=[BiocGenerics IRanges Biobase affxparser BiocGenerics IRanges Biobase affxparser]; };
rRDP = derive { name="rRDP"; version="1.0.0"; sha256="06rd9dmsrpp1k70iap9y6vfxgrg77mdd5g67q4qspmfm3srrig8y"; depends=[Biostrings]; };
rSFFreader = derive { name="rSFFreader"; version="0.14.0"; sha256="10bnliqpmch3fgnmi0cnq4xkh66r1r5k72asnlmmh9jcfi5ziaqy"; depends=[ShortRead Biostrings IRanges S4Vectors IRanges XVector Biostrings]; };
rTANDEM = derive { name="rTANDEM"; version="1.6.1"; sha256="17gv6rbhbmn0v1bsqn5cd78wd6g415dcr72pg0h2r6cxyc611qjv"; depends=[]; };
rTRM = derive { name="rTRM"; version="1.4.0"; sha256="06kfxb4rmq38xpmd53bnbgfg5w275ik88x1my829lk441prj2vi6"; depends=[AnnotationDbi]; };
rTRMui = derive { name="rTRMui"; version="1.4.0"; sha256="1pd4fjzi4qlghy7si8g63dm4rrk1nzvpxr4yf5fzd0k48fyhmz0r"; depends=[rTRM MotifDb]; };
rain = derive { name="rain"; version="1.0.1"; sha256="01dlpz9cdwxkgfdmshyh9hy4clsx0yk12nlndgz06gjr07l7ip2q"; depends=[multtest]; };
rama = derive { name="rama"; version="1.40.0"; sha256="1bmx8f0nvqfnl756mzf6m0d392hlvz6swlvs2m07abj0ka32z6jb"; depends=[]; };
randPack = derive { name="randPack"; version="1.12.0"; sha256="16ykrzdhhns5nww7jqh4vax6v96wkhsj3capxbq510ljb97zpayy"; depends=[Biobase]; };
rbsurv = derive { name="rbsurv"; version="2.24.0"; sha256="0cnhdfpwgxx3fbj8zvhrzlkv0qhgs3v05ql7x91ningg554isvz8"; depends=[Biobase]; };
reb = derive { name="reb"; version="1.44.0"; sha256="10lalx5fdrgfi4z557ciq445bdnp31ihdcphniw58v0cm1nirl0i"; depends=[Biobase idiogram]; };
regionReport = derive { name="regionReport"; version="1.0.5"; sha256="16k82hlyspcldhdl6kwixjdwd3drchdwmc9bb7s8yd8ijhqh8xdm"; depends=[derfinder derfinderPlot GenomeInfoDb GenomicRanges ggbio IRanges]; };
rfPred = derive { name="rfPred"; version="1.4.0"; sha256="0r55i8sdy0zjv1lf8wyafysgvh8krsghhbc1h2nblfab8875v4z7"; depends=[Rsamtools GenomicRanges IRanges]; };
rhdf5 = derive { name="rhdf5"; version="2.10.0"; sha256="1lb0wni0l2k18p6n88chdgm132xv4ff0p5ah95z08k3vajgm4afp"; depends=[zlibbioc]; };
riboSeqR = derive { name="riboSeqR"; version="1.0.5"; sha256="19i703ykbm0f9rfc08nrzf6b9d3nin4illf35kljf0nlmmpj68f7"; depends=[GenomicRanges]; };
rnaSeqMap = derive { name="rnaSeqMap"; version="2.24.0"; sha256="06q1a6zyxzarimwyiq4bszs5s0s921i0d3d59hifgkvarlqf0ki9"; depends=[Biobase Rsamtools GenomicAlignments GenomicRanges IRanges edgeR DESeq]; };
roar = derive { name="roar"; version="1.2.0"; sha256="0xq8pjjzvcwl1wh91kla7rws1bx7gc1v246al4piymmjisivz3wq"; depends=[GenomicRanges GenomicAlignments rtracklayer S4Vectors]; };
rols = derive { name="rols"; version="1.8.0"; sha256="10p8lcifff39cmnx34hmhfs11yi4jd8xp0h0blhwhv4dmnp5bn9j"; depends=[Biobase]; };
rpx = derive { name="rpx"; version="1.2.0"; sha256="1cq569spv8k54xpl6kh2lw8xvs4kj25vgq8nvj9akisipbnf1n8f"; depends=[]; };
rqubic = derive { name="rqubic"; version="1.12.0"; sha256="0l90rzajw966k96c5azzi4p5b0dnc5ydjf2bvfjbnfs21kgcqkqg"; depends=[Biobase]; };
rsbml = derive { name="rsbml"; version="2.24.1"; sha256="1xq64md8i1yjbngpds96b73ywa1qsfraiw21dckl731hqggw6q6a"; depends=[BiocGenerics BiocGenerics graph]; };
rtracklayer = derive { name="rtracklayer"; version="1.26.3"; sha256="1731z3hnhn6kqyijw2haq7jqh0izpvqxywrnk1mfmn7wx9sp6nbj"; depends=[GenomicRanges BiocGenerics S4Vectors IRanges XVector GenomeInfoDb Biostrings zlibbioc Rsamtools GenomicAlignments S4Vectors IRanges XVector]; };
sRAP = derive { name="sRAP"; version="1.6.0"; sha256="0js1b4mad83635n08g2bz259knknffa4zqqh4an697fz0q4gkf55"; depends=[qvalue]; };
sSeq = derive { name="sSeq"; version="1.4.0"; sha256="1c6an23l69210zqb76b4n66pn7iin4im9g8wm750k567w92xs3ry"; depends=[]; };
safe = derive { name="safe"; version="3.6.1"; sha256="18s8p3cjyxka3xkwmmzbp8pnqn3rvd85zan46f41j8awgaxw8db2"; depends=[AnnotationDbi Biobase]; };
sagenhaft = derive { name="sagenhaft"; version="1.36.0"; sha256="19s55x4d5s0imkkyg9ihrc7l4q1w4xm8n4pg7l18zx4xb316fv88"; depends=[]; };
sangerseqR = derive { name="sangerseqR"; version="1.3.4"; sha256="0as1ynn1lvffiaflfiijjglyjx9ms812vyb6qlhdcp4cz2lzjyzk"; depends=[Biostrings]; };
sapFinder = derive { name="sapFinder"; version="1.4.0"; sha256="1h4b44hz8016ggvqxcjzkxk84xgk1d1vxa9y3nxxwr4cz6f6i7k2"; depends=[rTANDEM]; };
savR = derive { name="savR"; version="1.4.0"; sha256="1baj5bnx32wwq3y3xwgqvp57629a3jfvjvzhnyn6f9qac68d4c67"; depends=[]; };
scsR = derive { name="scsR"; version="1.3.2"; sha256="17xmcbsch7p45a3ir11n6izw92jipbflp0778bvqrhwjaahi41kx"; depends=[STRINGdb BiocGenerics Biostrings IRanges]; };
segmentSeq = derive { name="segmentSeq"; version="2.0.1"; sha256="0kxmnsfdpmsaxdhdvskh8g87ldvnkdm09lhbpq0irbi7k9nq94g3"; depends=[baySeq ShortRead GenomicRanges IRanges S4Vectors]; };
seqCNA = derive { name="seqCNA"; version="1.10.0"; sha256="01aa533a6qsjsw5yr47c2k2dmxpgzgxixn99dmbc336kwrq6vhgf"; depends=[GLAD]; };
seqLogo = derive { name="seqLogo"; version="1.32.1"; sha256="1bnhfmwbzprpyz6p7rwsk1idcjg0plhxwfs9v4k8wsx83mcdyral"; depends=[]; };
seqTools = derive { name="seqTools"; version="1.0.0"; sha256="1q41w150w4j73ihsy6pibn1dd48jfs7fhgymq9rd0510mrlp770i"; depends=[zlibbioc zlibbioc]; };
seqbias = derive { name="seqbias"; version="1.14.0"; sha256="0q5zxf4ds4adnp1cxlldyfli844lf1zd1sz9rn7gv34hmfyw1jdc"; depends=[GenomicRanges Biostrings zlibbioc Rsamtools]; };
seqplots = derive { name="seqplots"; version="1.2.0"; sha256="17rrfiphrdsajr5mbigcbv4wgd8x72wb37my1wzdw54nhg8l69w6"; depends=[IRanges BSgenome rtracklayer GenomicRanges Biostrings GenomeInfoDb S4Vectors]; };
shinyMethyl = derive { name="shinyMethyl"; version="1.0.2"; sha256="0n73qi3vvlqyg87ww3azwakvz6z6saz59rknv8267p48dzasnivc"; depends=[BiocGenerics minfi]; };
shinyTANDEM = derive { name="shinyTANDEM"; version="1.4.0"; sha256="1vb3s7qvrh0b42dnbdyyrxx89rq0f1m5dygcygsl1mgc587spgm7"; depends=[rTANDEM]; };
sigPathway = derive { name="sigPathway"; version="1.34.0"; sha256="05l87qm8myfnqj3pndnazsfjy7c7ib5mphr31xiyrz8ipl2y7462"; depends=[]; };
sigaR = derive { name="sigaR"; version="1.10.0"; sha256="0z7pnrizmindckl1vafg1dpp7xwp7pvx6hr8d5diwyaw0mfj430f"; depends=[Biobase CGHbase marray]; };
siggenes = derive { name="siggenes"; version="1.40.0"; sha256="1w1c187dqdhk3wqh8bgslw85zwr6pzfkq0dlgs9d58fsrky0wsay"; depends=[Biobase multtest]; };
simpleaffy = derive { name="simpleaffy"; version="2.42.0"; sha256="0wz3kzn5fy4bkpzq9njs2lz6a29mcz91a5gvfrf06wq5gsn6l3rz"; depends=[BiocGenerics Biobase affy genefilter gcrma BiocGenerics Biobase affy genefilter gcrma]; };
simulatorZ = derive { name="simulatorZ"; version="1.0.0"; sha256="1sabjya98prprq10gbra4c3maclw1y38r4826b9vzxp41ragm1sf"; depends=[Biobase GenomicRanges]; };
sizepower = derive { name="sizepower"; version="1.36.0"; sha256="0lgb7gsqa8cq5mjkp7hxidkvhms7nj8cyxhxcb2716d6ivllkvff"; depends=[]; };
snapCGH = derive { name="snapCGH"; version="1.36.0"; sha256="17c5gybk7mpl4w9aja01hxirjs6rygqpinsqlfmsnjk9pknqw43d"; depends=[limma DNAcopy aCGH DNAcopy GLAD limma tilingArray]; };
snm = derive { name="snm"; version="1.14.0"; sha256="1d979rbxpypbc2s192p5f6ynps2pbap3ym4gig14fjrd61gzcmrb"; depends=[]; };
snpStats = derive { name="snpStats"; version="1.16.0"; sha256="1560mxm9ni4wlssw2kdd86nflb45rcjv8060zqiainy1jd92ys0x"; depends=[BiocGenerics zlibbioc]; };
spade = derive { name="spade"; version="1.14.0"; sha256="0fhhmx80zjixd1wp55aphkb9pfvgm03pd2kg4yxim1iic7n09xm3"; depends=[Biobase flowCore]; };
specL = derive { name="specL"; version="1.0.0"; sha256="03igq0cb134kfr36g3gsvzj8n4hz5zwmg2j0pd4zhr500d9sxfs7"; depends=[]; };
spikeLI = derive { name="spikeLI"; version="2.26.0"; sha256="1hdrrlkiiqkaypp425cgggjcwb3gdsd0v0frqqx3bb845r91x42x"; depends=[]; };
spkTools = derive { name="spkTools"; version="1.22.0"; sha256="0dw27jfmdjn75ga086a19inl6xc02jpwk9vjc3yvayp67i8nh1mb"; depends=[Biobase Biobase]; };
spliceR = derive { name="spliceR"; version="1.8.0"; sha256="1v6451mry0sjj1bi3s2da6dymq1650pk1g7h09ckdvsvhnyrfmxq"; depends=[cummeRbund rtracklayer GenomicRanges IRanges]; };
spliceSites = derive { name="spliceSites"; version="1.4.0"; sha256="1y93fzsmw15gqn1l9i4qkds4xfvlsv9ynlwkxwfdrd5vy6sclahr"; depends=[Biobase Biostrings seqLogo BiocGenerics]; };
splicegear = derive { name="splicegear"; version="1.38.0"; sha256="1sxvd2qvvbhcrsmij8jz9r9l6zk2a8idmhrrf1hkmkx8a9xkdq9r"; depends=[Biobase annotate Biobase]; };
splots = derive { name="splots"; version="1.32.0"; sha256="1bz76nvplm862072m4dd6bm7qb93fld7lwsx18jah7xkjrr3alp6"; depends=[]; };
spotSegmentation = derive { name="spotSegmentation"; version="1.40.0"; sha256="02k3d3kz8rssn6c8y5ywwsynh3zjnkxwy7w4d16zx4haivrpziyn"; depends=[]; };
sscore = derive { name="sscore"; version="1.38.0"; sha256="0bxclcx3xbsqs1i2w80rh8amzsxzv5mavbpy81pgrqsnqhldriyd"; depends=[affy affyio]; };
ssize = derive { name="ssize"; version="1.40.0"; sha256="1fb3c28v7p3fgpciv9b7v7clyiyyaiaz6r4hjkvdcf236xs1kjwm"; depends=[]; };
ssviz = derive { name="ssviz"; version="1.0.0"; sha256="0y0nvlvwfhf1nhghxaigskh4rsjjfy59lnbr2s8jqswzk39n6843"; depends=[Rsamtools Biostrings]; };
staRank = derive { name="staRank"; version="1.8.0"; sha256="0yzcz2vpx7gxswy6rxdp59qfsa2jiy35kya2i2n3yrpnhb0s7wbm"; depends=[cellHTS2]; };
stepNorm = derive { name="stepNorm"; version="1.38.0"; sha256="0267smjz132lj2ka0ccvgdn12r416hc9wqlbdzix59i80py45hwh"; depends=[marray marray]; };
stepwiseCM = derive { name="stepwiseCM"; version="1.12.0"; sha256="1p5yhz2s4ad30p47bx0vmvfdm8y7adcvdi5ydqg3g0zdh2akvg21"; depends=[tspair Biobase]; };
supraHex = derive { name="supraHex"; version="1.4.0"; sha256="1qq2cbq04623qp1yb22dkiz5d7gz7fspia4601jhair1c129vm4g"; depends=[]; };
survcomp = derive { name="survcomp"; version="1.16.0"; sha256="1z03krc9lznry1izaxb91jbw3zghajxfiigfkgdj0n2a5rd3yhwk"; depends=[]; };
sva = derive { name="sva"; version="3.12.0"; sha256="1x2lh2fl53zv1r97p4gq8jvip99wq2j1wpps7j2qlfh9fclwbbsk"; depends=[genefilter]; };
switchBox = derive { name="switchBox"; version="1.0.0"; sha256="1m5icry27l4hh2h3f7kfph0qc332n2l0miazhaqfazilyw3pvyai"; depends=[]; };
synapter = derive { name="synapter"; version="1.8.4"; sha256="1j4dm2d43ji2xrj9835724qn7ji7vsi5rsvmc0m0za81lz2zvak3"; depends=[MSnbase qvalue multtest Biobase Biostrings cleaver BiocParallel]; };
systemPipeR = derive { name="systemPipeR"; version="1.0.12"; sha256="0d0kpgkn2nlh54v5rdiacjykh6vxyf20yw18dji0q1l8ggklmz04"; depends=[Rsamtools Biostrings ShortRead BiocGenerics limma edgeR DESeq2 GOstats annotate]; };
tRanslatome = derive { name="tRanslatome"; version="1.4.0"; sha256="173vb64bd3qxy4hikn7d31nvlpzvpby12akgc5pqbg5hcgm8rqkm"; depends=[limma sigPathway anota DESeq edgeR RankProd topGO GOSemSim Heatplus]; };
ternarynet = derive { name="ternarynet"; version="1.10.0"; sha256="1n6dh3y2bpvcccbpglw788i236bh36n9npk6rc1j4n7pi0wimzcl"; depends=[]; };
tigre = derive { name="tigre"; version="1.20.0"; sha256="09298m4wg2f1ra45rhv8srsbzqz8cczy50aw2iiavzdrzibns31r"; depends=[BiocGenerics Biobase AnnotationDbi annotate]; };
tilingArray = derive { name="tilingArray"; version="1.44.0"; sha256="15bgljy9xd2sljklvmha361himkzaxkrjis9wcz9z6wjzfr14h1r"; depends=[Biobase affy vsn genefilter]; };
timecourse = derive { name="timecourse"; version="1.38.0"; sha256="14w87dqivhfp3xyxhlxvnka7v1rhyxxmmdygkjydag3yh4z6zfi4"; depends=[Biobase limma marray]; };
tkWidgets = derive { name="tkWidgets"; version="1.44.0"; sha256="0s23ajd61jbklkhp1cr7nq4ssw8nkvr77r4viv4z3gnkndrflnl3"; depends=[widgetTools DynDoc]; };
topGO = derive { name="topGO"; version="2.18.0"; sha256="1py4r0pq777r2xwvhyp80dyycfy072dsg1z0jd7vf7nn4x3xyjfl"; depends=[graph Biobase AnnotationDbi graph Biobase AnnotationDbi]; };
trackViewer = derive { name="trackViewer"; version="1.2.0"; sha256="00fc063zh9wk6dfp2haxrgk79nxcczf25jkkr1s22lh2rnr6q3r3"; depends=[GenomicRanges GenomicAlignments GenomicFeatures Gviz Rsamtools rtracklayer]; };
tracktables = derive { name="tracktables"; version="1.0.0"; sha256="116y9ghw40qvf10m6g8pbd29rr67jijk13a1k7a3w70jh96vin1q"; depends=[IRanges GenomicRanges XVector Rsamtools]; };
triform = derive { name="triform"; version="1.8.0"; sha256="0f02a7jc3l2scs6pimc6kvv5f7f67gvxk7y55im7jzhzwb39bv42"; depends=[IRanges IRanges BiocGenerics]; };
trigger = derive { name="trigger"; version="1.12.0"; sha256="0y8vzwh6a2ijf8g60sdnkhzq8pj0n9kxy60zb491n5pv9n84j5ws"; depends=[qvalue sva]; };
trio = derive { name="trio"; version="3.4.0"; sha256="0nc35ijljibzlxbfdps5z0snrgjwsx6hnwkg85m03mkmhgv6q513"; depends=[]; };
triplex = derive { name="triplex"; version="1.6.0"; sha256="1r4z9fb5xfmgvs22pc2ma0r9sxhknqa096wk9ff728jrmfdfnrzl"; depends=[S4Vectors IRanges XVector Biostrings GenomicRanges S4Vectors IRanges XVector Biostrings]; };
tspair = derive { name="tspair"; version="1.24.0"; sha256="1y48148ym5h493rvjvnf3kgw1gdi29m2l938lmig28c6xad3wjzi"; depends=[Biobase]; };
tweeDEseq = derive { name="tweeDEseq"; version="1.12.0"; sha256="1gymsalw3bh0j8mvnwvslim9nramdpcrm7xq2fyy6zmqnfmfkc6n"; depends=[limma edgeR cqn]; };
twilight = derive { name="twilight"; version="1.42.0"; sha256="0zwsbaqpya7rw012915l6q87xnqrz0pg0iqmrax7qfrv2ryv6ac2"; depends=[Biobase Biobase]; };
unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.2.0"; sha256="04r07537pnnnrby2lnrm8qiihz2530h3ah9jbrw5knwc2jpi83qy"; depends=[BiocGenerics HTqPCR]; };
vbmp = derive { name="vbmp"; version="1.34.0"; sha256="12x2kmjidpap9qbyppc8kka0z7ijsjhkipfs8kh91wfr6i4a89sm"; depends=[]; };
viper = derive { name="viper"; version="1.2.0"; sha256="1nx10mg6flll5ypg8bzx23703w27vf01xry1vbw211g7hhkb10hd"; depends=[Biobase]; };
vsn = derive { name="vsn"; version="3.34.0"; sha256="14kvfvpfc2dvkv4692vdkj39agd9l7fh77jynpi5c5c2wkgamm4w"; depends=[Biobase affy limma]; };
vtpnet = derive { name="vtpnet"; version="0.6.0"; sha256="1bs3nj4zairvf1hhwvrmckzj8w8q942kfrhphwv7gcyhgza1l01x"; depends=[graph GenomicRanges gwascat]; };
wateRmelon = derive { name="wateRmelon"; version="1.6.0"; sha256="0akw9a6d6y04icgcfwsd6f5icbiwckkgrj4d7j7wqs96yzyjm47i"; depends=[limma methylumi lumi ROC]; };
wavClusteR = derive { name="wavClusteR"; version="2.0.0"; sha256="0xnnmj5hqnf7zl6qfs4fc2srp1liq8xhjxphkaiqyk10h2442nbb"; depends=[GenomicRanges Rsamtools Biostrings GenomicFeatures IRanges rtracklayer]; };
waveTiling = derive { name="waveTiling"; version="1.8.1"; sha256="19rlyhzid11x8d56lj5c8w127ycs6maw4xs8qqia4dsc6jdii617"; depends=[oligo oligoClasses Biobase Biostrings GenomeGraphs affy preprocessCore GenomicRanges IRanges]; };
weaver = derive { name="weaver"; version="1.32.0"; sha256="16bqpq2p013m14rjzqh4r57skfj5k93xvl0s7cp8wyq6zhisp1lv"; depends=[]; };
webbioc = derive { name="webbioc"; version="1.38.0"; sha256="00rwccdbvv7vk8gspkqizjjshh9rccmxzzb95yhgg6qw2n10afgd"; depends=[Biobase affy multtest annaffy vsn gcrma qvalue multtest qvalue BiocInstaller]; };
widgetTools = derive { name="widgetTools"; version="1.44.0"; sha256="0lzf99s9jzhl98i6lr45n76jkaycjxrb0nrwi8hcc7rq30x0adjd"; depends=[]; };
xcms = derive { name="xcms"; version="1.42.0"; sha256="16icfyl3whvwgfzyz56wjl9ynrvd7bznghd6rczczkzcq2sgiqdf"; depends=[mzR BiocGenerics Biobase]; };
xmapbridge = derive { name="xmapbridge"; version="1.24.0"; sha256="01xdx7pda642479xg2kzy2bbxqwmwg4zlhigqpmycv13pmrpqa8c"; depends=[]; };
xps = derive { name="xps"; version="1.26.1"; sha256="1pqdkm8g9x74l0dfwyrcsqqmi0c8i9dkiq4sydg60zygdipmi65x"; depends=[]; };
yaqcaffy = derive { name="yaqcaffy"; version="1.26.0"; sha256="0n3pjvmx833yby6ip3cww42lsk3c4hl1csvd72480l28cwr4n4zz"; depends=[simpleaffy]; };
zlibbioc = derive { name="zlibbioc"; version="1.12.0"; sha256="05ps73iwf1s57nksla5mbbbf35447j131qnk27aw8hgkwbq3hrrs"; depends=[]; };
}

40
pkgs/development/r-modules/default.nix
View File

@ -7,11 +7,11 @@ let
buildRPackage = pkgs.callPackage ./generic-builder.nix { inherit R; };
# Package template
# Generates package templates given per-repository settings
#
# some packages, e.g. cncaGUI, require X running while installation,
# so that we use xvfb-run if requireX is true.
derive = lib.makeOverridable ({
mkDerive = {mkHomepage, mkUrls}: lib.makeOverridable ({
name, version, sha256,
depends ? [],
doCheck ? true,
@ -21,21 +21,33 @@ let
}: buildRPackage {
name = "${name}-${version}";
src = fetchurl {
urls = [
"mirror://cran/src/contrib/${name}_${version}.tar.gz"
"mirror://cran/src/contrib/00Archive/${name}/${name}_${version}.tar.gz"
];
inherit sha256;
urls = mkUrls { inherit name version; };
};
inherit doCheck requireX;
propagatedBuildInputs = depends;
nativeBuildInputs = depends;
meta.homepage = "http://cran.r-project.org/web/packages/${name}/";
meta.homepage = mkHomepage name;
meta.platforms = R.meta.platforms;
meta.hydraPlatforms = hydraPlatforms;
meta.broken = broken;
});
# Templates for generating Bioconductor and CRAN packages
# from the name, version, sha256, and optional per-package arguments above
#
deriveBioc = mkDerive {
mkHomepage = name: "http://cran.r-project.org/web/packages/${name}/";
mkUrls = {name, version}: [ "mirror://bioc/src/contrib/${name}_${version}.tar.gz" ];
};
deriveCran = mkDerive {
mkHomepage = name: "http://bioconductor.org/packages/release/bioc/html/${name}.html";
mkUrls = {name, version}: [
"mirror://cran/src/contrib/${name}_${version}.tar.gz"
"mirror://cran/src/contrib/00Archive/${name}/${name}_${version}.tar.gz"
];
};
# Overrides package definitions with nativeBuildInputs.
# For example,
#
@ -193,7 +205,8 @@ let
# `self` is `_self` with overridden packages;
# packages in `_self` may depends on overridden packages.
self = (defaultOverrides _self self) // overrides;
_self = import ./cran-packages.nix { inherit self derive; };
_self = import ./cran-packages.nix { inherit self; derive = deriveCran; }
// import ./bioc-packages.nix { inherit self; derive = deriveBioc; };
# tweaks for the individual packages and "in self" follow
@ -738,13 +751,8 @@ let
"CosmoPhotoz" # Requires Nlopt
"cp4p" # build is broken
"cplexAPI" # requires CPLEX
"crmn" # requires pcaMethods, and Biobase
"Crossover" # fails self-test
"CrypticIBDcheck" # requires rJPSGCS
"cudaBayesreg" # requres Rmath
"curvHDR" # requires flowCore
"D2C" # requires gRbase
"DAAGbio" # requires limma
"daff" # requires V8 to build
"dagbag" # requires Rlapack
"DAMisc" # Requires Nlopt
@ -814,6 +822,7 @@ let
"fPortfolio" # requires rneos
"freqweights" # requires nlopt
"fscaret" # requires nlopt
"FunctionalNetworks" # requires breastCancerVDX
"FunctionalNetworks" # requires breastCancerVDX, and Biobase
"fxregime" # requires nlopt
"gamclass" # requires nlopt
@ -829,6 +838,7 @@ let
"gitter" # requires EBImage
"glmgraph" # test suite says: "undefined symbol: dgemv_"
"gmatrix" # depends on proprietary cudatoolkit
"gmatrix" # requires CUDA runtime
"gMCP" # fails self-test
"GOGANPA" # requires WGCNA
"gplm" # requires nlopt
@ -903,6 +913,7 @@ let
"longpower" # requires nlopt
"LOST" # requires pcaMethods
"ltsk" # requires Rlapack and Rblas
"magma" # requires MAGMA
"MAMA" # requires metaMA
"marked" # requires nlopt
"MaxPro" # Requires Nlopt
@ -1018,6 +1029,7 @@ let
"polytomous" # requires nlopt
"pomp" # requires nlopt
"ppiPre" # requires AnnotationDbi, GOSemSim, GO.db
"ppiPre" # requires GO.db
"predictmeans" # requires nlopt
"pRF" # requires multtest
"prLogistic" # requires nlopt
@ -1103,7 +1115,6 @@ let
"rgbif" # requires V8 to build
"rgp" # fails self-test
"rgpui" # depends on broken rgp
"RImageJROI" # requires spatstat
"rjade" # requires V8 to build
"rJPSGCS" # requires chopsticks
"rLindo" # requires LINDO API
@ -1130,6 +1141,7 @@ let
"RSeed" # requires RBGL, and graph
"rsig" # requires survcomp
"RSNPset" # requires qvalue
"rsprng" # requres sprng
"Rsymphony" # FIXME: requires SYMPHONY
"rugarch" # requires nlopt
"RVAideMemoire" # Requires Nlopt

24
pkgs/development/r-modules/generate-cran-packages.R → pkgs/development/r-modules/generate-r-packages.R
View File

@ -3,16 +3,21 @@
library(data.table)
library(parallel)
cl <- makeCluster(10)
options(repos=structure(c(CRAN="http://cran.rstudio.com/")))
mirrorType <- commandArgs(trailingOnly=TRUE)[1]
packagesFile <- paste(mirrorType, 'packages.nix', sep='-')
mirrorUrls <- list(
bioc="http://bioconductor.statistik.tu-dortmund.de/packages/3.0/bioc",
cran="http://cran.r-project.org"
)
mirrorUrl <- paste(mirrorUrls[mirrorType], "/src/contrib/", sep="")
readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines('cran-packages.nix'), -1)))
readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines(packagesFile), -1)))
nixPrefetch <- function(name, version) {
prevV <- readFormatted$V2 == name & readFormatted$V4 == version
if (sum(prevV) == 1) as.character(readFormatted$V6[ prevV ]) else
system(paste0("nix-prefetch-url --type sha256 http://cran.rstudio.com/src/contrib/", name, "_", version, ".tar.gz"), intern=TRUE)
# system(paste0("nix-hash --flat --base32 --type sha256 /nix/store/*", name, "_", version, ".tar.gz", "| head -n 1"), intern=TRUE)
system(paste0("nix-prefetch-url --type sha256 ", mirrorUrl, name, "_", version, ".tar.gz"), intern=TRUE)
}
formatPackage <- function(name, version, sha256, depends, imports, linkingTo, knownPackages) {
@ -28,21 +33,20 @@ formatPackage <- function(name, version, sha256, depends, imports, linkingTo, kn
paste0(attr, " = derive { name=\"", name, "\"; version=\"", version, "\"; sha256=\"", sha256, "\"; depends=[", depends, "]; };")
}
clusterExport(cl, c("nixPrefetch","readFormatted"))
clusterExport(cl, c("nixPrefetch","readFormatted", "mirrorUrl"))
pkgs <- as.data.table(available.packages(filters=c("R_version", "OS_type", "CRAN", "duplicates")))
pkgs <- subset(pkgs, Repository=="http://cran.rstudio.com/src/contrib")
pkgs <- as.data.table(available.packages(mirrorUrl, filters=c("R_version", "OS_type", "duplicates")))
pkgs <- pkgs[order(Package)]
pkgs$sha256 <- parApply(cl, pkgs, 1, function(p) nixPrefetch(p[1], p[2]))
knownPackages <- unique(pkgs$Package)
nix <- apply(pkgs, 1, function(p) formatPackage(p[1], p[2], p[18], p[4], p[5], p[6], knownPackages))
cat("# This file is generated from generate-cran-packages.R. DO NOT EDIT.\n")
cat("# This file is generated from generate-r-packages.R. DO NOT EDIT.\n")
cat("# Execute the following command to update the file.\n")
cat("#\n")
cat("# Rscript generate-cran-packages.R > cran-packages.nix\n")
cat("\n")
cat(paste("# Rscript generate-r-packages.R", mirrorType, ">", packagesFile))
cat("\n\n")
cat("{ self, derive }: with self; {\n")
cat(paste(nix, collapse="\n"), "\n")
cat("}\n")