diff --git a/pkgs/applications/science/molecular-dynamics/lammps/default.nix b/pkgs/applications/science/molecular-dynamics/lammps/default.nix new file mode 100644 index 000000000000..35ab53483687 --- /dev/null +++ b/pkgs/applications/science/molecular-dynamics/lammps/default.nix @@ -0,0 +1,55 @@ +{ stdenv, writeText, fetchurl, + libpng, fftw, + mpiSupport ? false, mpi ? null +}: + +assert mpiSupport -> mpi != null; + +stdenv.mkDerivation rec { + # LAMMPS has weird versioning converted to ISO 8601 format + version = "2016-02-16"; + name = "lammps-${version}"; + + src = fetchurl { + url = "mirror://sourceforge/lammps/lammps-16Feb16.tar.gz"; + sha256 = "1yzfbkxma3xa1288rnn66h4w0smbmjkwq1fx1y60pjiw0prmk105"; + }; + + passthru = { + inherit mpi; + }; + + buildInputs = [ fftw libpng ] + ++ (stdenv.lib.optionals mpiSupport [ mpi ]); + + # Must do manual build due to LAMMPS requiring a seperate build for + # the libraries and executable + builder = writeText "builder.sh" '' + source $stdenv/setup + + tar xzf $src + cd lammps-*/src + make mode=exe ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="-DLAMMPS_GZIP -DLAMMPS_PNG" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng + make mode=shlib ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="-DLAMMPS_GZIP -DLAMMPS_PNG" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng + + mkdir -p $out/bin + cp -v lmp_* $out/bin/lammps + + mkdir -p $out/lib + cp -v liblammps* $out/lib/ + ''; + + meta = { + description = "Classical Molecular Dynamics simulation code"; + longDescription = '' + LAMMPS is a classical molecular dynamics simulation code designed to + run efficiently on parallel computers. It was developed at Sandia + National Laboratories, a US Department of Energy facility, with + funding from the DOE. It is an open-source code, distributed freely + under the terms of the GNU Public License (GPL). + ''; + homepage = "http://lammps.sandia.gov"; + license = stdenv.lib.licenses.gpl2; + platforms = stdenv.lib.platforms.linux; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index d70da4ebf411..2f583ac5cdec 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -15524,6 +15524,15 @@ in ### SCIENCE/MOLECULAR-DYNAMICS + lammps = callPackage ../applications/science/molecular-dynamics/lammps { + fftw = fftw; + }; + + lammps-mpi = appendToName "mpi" (lammps.override { + mpiSupport = true; + mpi = openmpi; + }); + gromacs = callPackage ../applications/science/molecular-dynamics/gromacs { singlePrec = true; mpiEnabled = false;