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plink-ng: init at 1.90b3

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This commit is contained in:
Justin Bedo 2016-11-14 10:49:40 +11:00
parent cad9212813
commit a6d6a3972f
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2 changed files with 36 additions and 0 deletions
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34
pkgs/applications/science/biology/plink-ng/default.nix Normal file
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@ -0,0 +1,34 @@
{ stdenv, fetchFromGitHub, zlib, openblas, darwin}:
stdenv.mkDerivation rec {
name = "plink-ng-${version}";
version = "1.90b3";
src = fetchFromGitHub {
owner = "chrchang";
repo = "plink-ng";
rev = "v${version}";
sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq";
};
buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ;
buildPhase = ''
sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h
${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""}
make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std
'';
installPhase = ''
mkdir -p $out/bin
cp plink $out/bin
'';
meta = {
description = "A comprehensive update to the PLINK association analysis toolset";
homepage = "https://www.cog-genomics.org/plink2";
license = stdenv.lib.licenses.gpl3;
platforms = stdenv.lib.platforms.all;
};
}

2
pkgs/top-level/all-packages.nix
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@ -16350,6 +16350,8 @@ in
paml = callPackage ../applications/science/biology/paml { };
plink = callPackage ../applications/science/biology/plink/default.nix { };
plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { };
samtools = callPackage ../applications/science/biology/samtools/default.nix { };