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Merge pull request #56913 from markuskowa/rm-julia06
julia: remove 0.6.4 (julia_06)
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markuskowa
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@ -1,25 +0,0 @@
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From e2b0ed6664fe4adfd0f9ce8fa14732d47b30ab5c Mon Sep 17 00:00:00 2001
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From: Thomas Tuegel <ttuegel@gmail.com>
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Date: Sat, 10 Oct 2015 16:18:53 -0500
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Subject: [PATCH 2/3] use system suitesparse
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---
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base/sparse/cholmod.jl | 2 +-
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1 file changed, 1 insertion(+), 1 deletion(-)
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diff --git a/base/sparse/cholmod.jl b/base/sparse/cholmod.jl
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index ec7e980..f834cc1 100644
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--- a/base/sparse/cholmod.jl
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+++ b/base/sparse/cholmod.jl
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@@ -151,7 +151,7 @@ function __init__()
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# Register gc tracked allocator if CHOLMOD is new enough
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if current_version >= v"3.0.0"
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- cnfg = cglobal((:SuiteSparse_config, :libsuitesparseconfig), Ptr{Void})
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+ cnfg = cglobal((:SuiteSparse_config, :libsuitesparse), Ptr{Void})
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unsafe_store!(cnfg, cglobal(:jl_malloc, Ptr{Void}), 1)
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unsafe_store!(cnfg, cglobal(:jl_calloc, Ptr{Void}), 2)
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unsafe_store!(cnfg, cglobal(:jl_realloc, Ptr{Void}), 3)
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--
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2.5.2
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@ -1,201 +0,0 @@
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{ stdenv, fetchurl, fetchzip
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# build tools
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, gfortran, m4, makeWrapper, patchelf, perl, which, python2
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# libjulia dependencies
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, libunwind, readline, utf8proc, zlib
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, llvm
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# standard library dependencies
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, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
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# linear algebra
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, openblas, arpack, suitesparse
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# Darwin frameworks
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, CoreServices, ApplicationServices
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}:
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with stdenv.lib;
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# All dependencies must use the same OpenBLAS.
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let
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arpack_ = arpack;
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suitesparse_ = suitesparse;
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in
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let
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arpack = arpack_.override { inherit openblas; };
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suitesparse = suitesparse_.override { inherit openblas; };
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in
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let
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dsfmtVersion = "2.2.3";
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dsfmt = fetchurl {
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url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmtVersion}.tar.gz";
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sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
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};
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libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
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libuv = fetchurl {
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url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
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sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
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};
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rmathVersion = "0.1";
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rmath-julia = fetchurl {
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url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
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sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
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};
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virtualenvVersion = "15.0.0";
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virtualenv = fetchurl {
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url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
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sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
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};
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majorVersion = "0";
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minorVersion = "6";
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maintenanceVersion = "4";
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version = "${majorVersion}.${minorVersion}.${maintenanceVersion}";
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in
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stdenv.mkDerivation rec {
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pname = "julia";
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inherit version;
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name = "${pname}-${version}";
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src = fetchzip {
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url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
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sha256 = "09axkkj914al7lzvcvhb33hz5wp083lk18llsvrn622fqhmyqabl";
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};
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prePatch = ''
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mkdir deps/srccache
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cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
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cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
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cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
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cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
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'';
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patches = [
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./0001.1-use-system-utf8proc.patch
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./0002-use-system-suitesparse.patch
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];
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postPatch = ''
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patchShebangs . contrib
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for i in backtrace replutil cmdlineargs compile; do
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mv test/$i.jl{,.off}
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touch test/$i.jl
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done
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sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
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sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
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'';
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buildInputs = [
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arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
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pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
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zlib llvm
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]
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++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
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;
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nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ];
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makeFlags =
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let
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arch = head (splitString "-" stdenv.hostPlatform.system);
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march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
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or (throw "unsupported architecture: ${arch}");
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# Julia requires Pentium 4 (SSE2) or better
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cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
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or (throw "unsupported architecture: ${arch}");
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in [
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"ARCH=${arch}"
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"MARCH=${march}"
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"JULIA_CPU_TARGET=${cpuTarget}"
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"PREFIX=$(out)"
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"prefix=$(out)"
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"SHELL=${stdenv.shell}"
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"USE_SYSTEM_BLAS=1"
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"USE_BLAS64=${if openblas.blas64 then "1" else "0"}"
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"LIBBLAS=-lopenblas"
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"LIBBLASNAME=libopenblas"
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"USE_SYSTEM_LAPACK=1"
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"LIBLAPACK=-lopenblas"
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"LIBLAPACKNAME=libopenblas"
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"USE_SYSTEM_SUITESPARSE=1"
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"SUITESPARSE_LIB=-lsuitesparse"
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"SUITESPARSE_INC=-I${suitesparse}/include"
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"USE_SYSTEM_ARPACK=1"
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"USE_SYSTEM_FFTW=1"
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"USE_SYSTEM_GMP=1"
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"USE_SYSTEM_LIBGIT2=1"
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"USE_SYSTEM_LIBUNWIND=1"
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"USE_SYSTEM_LLVM=1"
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"LLVM_VER=3.9.1"
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"USE_SYSTEM_MPFR=1"
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"USE_SYSTEM_OPENLIBM=1"
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"USE_SYSTEM_OPENSPECFUN=1"
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"USE_SYSTEM_PATCHELF=1"
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"USE_SYSTEM_PCRE=1"
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"PCRE_CONFIG=${pcre2.dev}/bin/pcre2-config"
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"PCRE_INCL_PATH=${pcre2.dev}/include/pcre2.h"
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"USE_SYSTEM_READLINE=1"
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"USE_SYSTEM_UTF8PROC=1"
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"USE_SYSTEM_ZLIB=1"
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];
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NIX_CFLAGS_COMPILE = [ "-fPIC" ];
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LD_LIBRARY_PATH = makeLibraryPath [
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arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
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openspecfun pcre2 suitesparse llvm
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];
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dontStrip = true;
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dontPatchELF = true;
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enableParallelBuilding = true;
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doCheck = !stdenv.isDarwin;
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checkTarget = "testall";
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# Julia's tests require read/write access to $HOME
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preCheck = ''
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export HOME="$NIX_BUILD_TOP"
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'';
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preBuild = ''
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sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
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sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
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export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
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'';
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postInstall = ''
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# Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
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# as using a wrapper with LD_LIBRARY_PATH causes segmentation
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# faults when program returns an error:
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# $ julia -e 'throw(Error())'
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find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
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if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
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ln -sv $lib $out/lib/julia/$(basename $lib)
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fi
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done
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'';
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passthru = {
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inherit majorVersion minorVersion maintenanceVersion;
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site = "share/julia/site/v${majorVersion}.${minorVersion}";
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};
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meta = {
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description = "High-level performance-oriented dynamical language for technical computing";
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homepage = https://julialang.org/;
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license = stdenv.lib.licenses.mit;
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maintainers = with stdenv.lib.maintainers; [ raskin ];
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platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
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broken = stdenv.isi686;
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};
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}
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@ -7269,13 +7269,6 @@ in
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jikes = callPackage ../development/compilers/jikes { };
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julia_06 = callPackage ../development/compilers/julia {
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gmp = gmp6;
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openblas = openblasCompat;
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inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
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llvm = llvm_39;
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};
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julia_07 = callPackage ../development/compilers/julia/0.7.nix {
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gmp = gmp6;
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openblas = openblasCompat;
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