From b9948fedc636daddd5851e71b634314fb0c34830 Mon Sep 17 00:00:00 2001 From: Robin Gloster Date: Thu, 30 Mar 2017 15:44:20 +0200 Subject: [PATCH] ncbi_tools: mark as broken and remove -fPIC PIC is used by default since 16.09 --- pkgs/applications/science/biology/ncbi-tools/default.nix | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/pkgs/applications/science/biology/ncbi-tools/default.nix b/pkgs/applications/science/biology/ncbi-tools/default.nix index 775e2ec3cc8c..e9d99aeb254c 100644 --- a/pkgs/applications/science/biology/ncbi-tools/default.nix +++ b/pkgs/applications/science/biology/ncbi-tools/default.nix @@ -9,16 +9,14 @@ stdenv.mkDerivation rec { name = "ncbi_tools"; - ncbi_version="Dec_31_2008"; + ncbi_version = "Dec_31_2008"; src = fetchurl { url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz"; sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr"; }; configureFlags = "--without-debug --with-bin-release --with-dll --without-static"; - # PIC flag (position independent code for shared libraries) - NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else ""; - buildInputs = [cpio]; + buildInputs = [ cpio ]; meta = { description = ''NCBI Bioinformatics toolbox (incl. BLAST)''; @@ -26,5 +24,6 @@ stdenv.mkDerivation rec { homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; license = "GPL"; priority = "5"; # zlib.so gives a conflict with zlib + broken = true; }; }