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Merge branch 'master' into staging

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Vladimír Čunát 2017-07-03 09:48:58 +02:00
commit d1a89ae9d7
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124 changed files with 4698 additions and 3339 deletions
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1
lib/maintainers.nix
View File

@ -530,6 +530,7 @@
steveej = "Stefan Junker <mail@stefanjunker.de>";
SuprDewd = "Bjarki Ágúst Guðmundsson <suprdewd@gmail.com>";
swarren83 = "Shawn Warren <shawn.w.warren@gmail.com>";
swflint = "Samuel W. Flint <swflint@flintfam.org>";
swistak35 = "Rafał Łasocha <me@swistak35.com>";
szczyp = "Szczyp <qb@szczyp.com>";
sztupi = "Attila Sztupak <attila.sztupak@gmail.com>";

2
nixos/modules/misc/ids.nix
View File

@ -166,7 +166,7 @@
dnsmasq = 141;
uhub = 142;
yandexdisk = 143;
collectd = 144;
#collectd = 144; #unused
consul = 145;
mailpile = 146;
redmine = 147;

4
nixos/modules/module-list.nix
View File

@ -236,16 +236,17 @@
./services/hardware/udisks2.nix
./services/hardware/upower.nix
./services/hardware/thermald.nix
./services/logging/SystemdJournal2Gelf.nix
./services/logging/awstats.nix
./services/logging/fluentd.nix
./services/logging/graylog.nix
./services/logging/heartbeat.nix
./services/logging/journalbeat.nix
./services/logging/klogd.nix
./services/logging/logcheck.nix
./services/logging/logrotate.nix
./services/logging/logstash.nix
./services/logging/rsyslogd.nix
./services/logging/SystemdJournal2Gelf.nix
./services/logging/syslog-ng.nix
./services/logging/syslogd.nix
./services/mail/dovecot.nix
@ -587,6 +588,7 @@
./services/web-servers/fcgiwrap.nix
./services/web-servers/jboss/default.nix
./services/web-servers/lighttpd/cgit.nix
./services/web-servers/lighttpd/collectd.nix
./services/web-servers/lighttpd/default.nix
./services/web-servers/lighttpd/gitweb.nix
./services/web-servers/lighttpd/inginious.nix

18
nixos/modules/programs/browserpass.nix
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@ -6,21 +6,17 @@ with lib;
###### interface
options = {
programs.browserpass = {
enable = mkOption {
default = false;
type = types.bool;
description = ''
Whether to install the NativeMessaging configuration for installed browsers.
'';
};
};
programs.browserpass.enable = mkEnableOption "the NativeMessaging configuration for Chromium, Chrome, and Vivaldi.";
};
###### implementation
config = mkIf config.programs.browserpass.enable {
environment.systemPackages = [ pkgs.browserpass ];
environment.etc."chromium/native-messaging-hosts/com.dannyvankooten.browserpass.json".source = "${pkgs.browserpass}/etc/chrome-host.json";
environment.etc."opt/chrome/native-messaging-hosts/com.dannyvankooten.browserpass.json".source = "${pkgs.browserpass}/etc/chrome-host.json";
environment.etc = {
"chromium/native-messaging-hosts/com.dannyvankooten.browserpass.json".source = "${pkgs.browserpass}/etc/chrome-host.json";
"chromium/policies/managed/com.dannyvankooten.browserpass.json".source = "${pkgs.browserpass}/etc/chrome-policy.json";
"opt/chrome/native-messaging-hosts/com.dannyvankooten.browserpass.json".source = "${pkgs.browserpass}/etc/chrome-host.json";
"opt/chrome/policies/managed/com.dannyvankooten.browserpass.json".source = "${pkgs.browserpass}/etc/chrome-policy.json";
};
};
}

9
nixos/modules/services/audio/mpd.nix
View File

@ -10,9 +10,11 @@ let
gid = config.ids.gids.mpd;
cfg = config.services.mpd;
playlistDir = "${cfg.dataDir}/playlists";
mpdConf = pkgs.writeText "mpd.conf" ''
music_directory "${cfg.musicDirectory}"
playlist_directory "${cfg.dataDir}/playlists"
playlist_directory "${playlistDir}"
db_file "${cfg.dbFile}"
state_file "${cfg.dataDir}/state"
sticker_file "${cfg.dataDir}/sticker.sql"
@ -126,7 +128,10 @@ in {
description = "Music Player Daemon";
wantedBy = [ "multi-user.target" ];
preStart = "mkdir -p ${cfg.dataDir} && chown -R ${cfg.user}:${cfg.group} ${cfg.dataDir}";
preStart = ''
mkdir -p "${cfg.dataDir}" && chown -R ${cfg.user}:${cfg.group} "${cfg.dataDir}"
mkdir -p "${playlistDir}" && chown -R ${cfg.user}:${cfg.group} "${playlistDir}"
'';
serviceConfig = {
User = "${cfg.user}";
PermissionsStartOnly = true;

72
nixos/modules/services/logging/heartbeat.nix Normal file
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@ -0,0 +1,72 @@
{ config, lib, pkgs, ... }:
with lib;
let
cfg = config.services.heartbeat;
heartbeatYml = pkgs.writeText "heartbeat.yml" ''
name: ${cfg.name}
tags: ${builtins.toJSON cfg.tags}
${cfg.extraConfig}
'';
in
{
options = {
services.heartbeat = {
enable = mkEnableOption "heartbeat";
name = mkOption {
type = types.str;
default = "heartbeat";
description = "Name of the beat";
};
tags = mkOption {
type = types.listOf types.str;
default = [];
description = "Tags to place on the shipped log messages";
};
stateDir = mkOption {
type = types.str;
default = "/var/lib/heartbeat";
description = "The state directory. heartbeat's own logs and other data are stored here.";
};
extraConfig = mkOption {
type = types.lines;
default = ''
heartbeat.monitors:
- type: http
urls: ["http://localhost:9200"]
schedule: '@every 10s'
'';
description = "Any other configuration options you want to add";
};
};
};
config = mkIf cfg.enable {
systemd.services.heartbeat = with pkgs; {
description = "heartbeat log shipper";
wantedBy = [ "multi-user.target" ];
preStart = ''
mkdir -p "${cfg.stateDir}"/{data,logs}
chown nobody:nogroup "${cfg.stateDir}"/{data,logs}
'';
serviceConfig = {
User = "nobody";
PermissionsStartOnly = true;
AmbientCapabilities = "cap_net_raw";
ExecStart = "${pkgs.heartbeat}/bin/heartbeat -c \"${heartbeatYml}\" -path.data \"${cfg.stateDir}/data\" -path.logs \"${cfg.stateDir}/logs\"";
};
};
};
}

36
nixos/modules/services/monitoring/collectd.nix
View File

@ -7,7 +7,6 @@ let
conf = pkgs.writeText "collectd.conf" ''
BaseDir "${cfg.dataDir}"
PIDFile "${cfg.pidFile}"
AutoLoadPlugin ${boolToString cfg.autoLoadPlugin}
Hostname "${config.networking.hostName}"
@ -26,13 +25,7 @@ let
in {
options.services.collectd = with types; {
enable = mkOption {
default = false;
description = ''
Whether to enable collectd agent.
'';
type = bool;
};
enable = mkEnableOption "collectd agent";
package = mkOption {
default = pkgs.collectd;
@ -59,14 +52,6 @@ in {
type = path;
};
pidFile = mkOption {
default = "/var/run/collectd.pid";
description = ''
Location of collectd pid file.
'';
type = path;
};
autoLoadPlugin = mkOption {
default = false;
description = ''
@ -100,27 +85,20 @@ in {
wantedBy = [ "multi-user.target" ];
serviceConfig = {
ExecStart = "${cfg.package}/sbin/collectd -C ${conf} -P ${cfg.pidFile}";
Type = "forking";
PIDFile = cfg.pidFile;
User = optional (cfg.user!="root") cfg.user;
ExecStart = "${cfg.package}/sbin/collectd -C ${conf} -f";
User = cfg.user;
PermissionsStartOnly = true;
};
preStart = ''
mkdir -p ${cfg.dataDir}
chmod 755 ${cfg.dataDir}
install -D /dev/null ${cfg.pidFile}
if [ "$(id -u)" = 0 ]; then
chown -R ${cfg.user} ${cfg.dataDir};
chown ${cfg.user} ${cfg.pidFile}
fi
mkdir -p "${cfg.dataDir}"
chmod 755 "${cfg.dataDir}"
chown -R ${cfg.user} "${cfg.dataDir}"
'';
};
};
users.extraUsers = optional (cfg.user == "collectd") {
name = "collectd";
uid = config.ids.uids.collectd;
};
};
}

58
nixos/modules/services/web-servers/lighttpd/collectd.nix Normal file
View File

@ -0,0 +1,58 @@
{ config, lib, pkgs, ... }:
with lib;
let
cfg = config.services.lighttpd.collectd;
collectionConf = pkgs.writeText "collection.conf" ''
datadir: "${config.services.collectd.dataDir}"
libdir: "${config.services.collectd.package}/lib/collectd"
'';
defaultCollectionCgi = config.services.collectd.package.overrideDerivation(old: {
name = "collection.cgi";
configurePhase = "true";
buildPhase = "true";
installPhase = ''
substituteInPlace contrib/collection.cgi --replace '"/etc/collection.conf"' '$ENV{COLLECTION_CONF}'
cp contrib/collection.cgi $out
'';
});
in
{
options.services.lighttpd.collectd = {
enable = mkEnableOption "collectd subservice accessible at http://yourserver/collectd";
collectionCgi = mkOption {
type = types.path;
default = defaultCollectionCgi;
description = ''
Path to collection.cgi script from (collectd sources)/contrib/collection.cgi
This option allows to use a customized version
'';
};
};
config = mkIf cfg.enable {
services.lighttpd.enableModules = [ "mod_cgi" "mod_alias" "mod_setenv" ];
services.lighttpd.extraConfig = ''
$HTTP["url"] =~ "^/collectd" {
cgi.assign = (
".cgi" => "${pkgs.perl}/bin/perl"
)
alias.url = (
"/collectd" => "${cfg.collectionCgi}"
)
setenv.add-environment = (
"PERL5LIB" => "${with pkgs; lib.makePerlPath [ perlPackages.CGI perlPackages.HTMLParser perlPackages.URI rrdtool ]}",
"COLLECTION_CONF" => "${collectionConf}"
)
}
'';
};
}

1
nixos/modules/services/x11/desktop-managers/lumina.nix
View File

@ -33,7 +33,6 @@ in
environment.systemPackages = [
pkgs.fluxbox
pkgs.libsForQt5.kwindowsystem
pkgs.kdeFrameworks.oxygen-icons5
pkgs.lumina
pkgs.numlockx
pkgs.qt5.qtsvg

50
nixos/modules/services/x11/xserver.nix
View File

@ -651,25 +651,49 @@ in
system.extraDependencies = singleton (pkgs.runCommand "xkb-layouts-exist" {
inherit (cfg) layout xkbDir;
} ''
if sed -n -e ':i /^! \(layout\|variant\) *$/ {
# We can use the default IFS here, because the layouts won't contain
# spaces or tabs and are ruled out by the sed expression below.
availableLayouts="$(
sed -n -e ':i /^! \(layout\|variant\) *$/ {
# Loop through all of the layouts/variants until we hit another ! at
# the start of the line or the line is empty ('t' branches only if
# the last substitution was successful, so if the line is empty the
# substition will fail).
:l; n; /^!/bi; s/^ *\([^ ]\+\).*/\1/p; tl
}' "$xkbDir/rules/base.lst" | grep -qxF "$layout"
then
touch "$out"
exit 0
fi
}' "$xkbDir/rules/base.lst" | sort -u
)"
cat >&2 <<-EOF
layoutNotFound() {
echo >&2
echo "The following layouts and variants are available:" >&2
echo >&2
The selected keyboard layout definition does not exist:
# While an output width of 80 is more desirable for small terminals, we
# really don't know the amount of columns of the terminal from within
# the builder. The content in $availableLayouts however is pretty
# large, so let's opt for a larger width here, because it will print a
# smaller amount of lines on modern KMS/framebuffer terminals and won't
# lose information even in smaller terminals (it only will look a bit
# ugly).
echo "$availableLayouts" | ${pkgs.utillinux}/bin/column -c 150 >&2
$layout
echo >&2
echo "However, the keyboard layout definition in" \
"\`services.xserver.layout' contains the layout \`$1', which" \
"isn't a valid layout or variant." >&2
echo >&2
exit 1
}
Set \`services.xserver.layout' to the name of an existing keyboard
layout (check $xkbDir/rules/base.lst for options).
# Again, we don't need to take care of IFS, see the comment for
# $availableLayouts.
for l in ''${layout//,/ }; do
if ! echo "$availableLayouts" | grep -qxF "$l"; then
layoutNotFound "$l"
fi
done
EOF
exit 1
touch "$out"
'');
services.xserver.config =

2
nixos/modules/system/boot/luksroot.nix
View File

@ -241,7 +241,7 @@ in
description = ''
The encrypted disk that should be opened before the root
filesystem is mounted. Both LVM-over-LUKS and LUKS-over-LVM
setups are sypported. The unencrypted devices can be accessed as
setups are supported. The unencrypted devices can be accessed as
<filename>/dev/mapper/<replaceable>name</replaceable></filename>.
'';

55
nixos/modules/virtualisation/xen-dom0.nix
View File

@ -267,26 +267,36 @@ in
mkdir -p /var/lib/xen # so we create them here unconditionally.
grep -q control_d /proc/xen/capabilities
'';
serviceConfig.ExecStart = ''
${cfg.stored}${optionalString cfg.trace " -T /var/log/xen/xenstored-trace.log"} --no-fork
'';
serviceConfig = if cfg.package.version < "4.8" then
{ ExecStart = ''
${cfg.stored}${optionalString cfg.trace " -T /var/log/xen/xenstored-trace.log"} --no-fork
'';
} else {
ExecStart = ''
${cfg.package}/etc/xen/scripts/launch-xenstore
'';
Type = "notify";
RemainAfterExit = true;
NotifyAccess = "all";
};
postStart = ''
time=0
timeout=30
# Wait for xenstored to actually come up, timing out after 30 seconds
while [ $time -lt $timeout ] && ! `${cfg.package}/bin/xenstore-read -s / >/dev/null 2>&1` ; do
time=$(($time+1))
sleep 1
done
${optionalString (cfg.package.version < "4.8") ''
time=0
timeout=30
# Wait for xenstored to actually come up, timing out after 30 seconds
while [ $time -lt $timeout ] && ! `${cfg.package}/bin/xenstore-read -s / >/dev/null 2>&1` ; do
time=$(($time+1))
sleep 1
done
# Exit if we timed out
if ! [ $time -lt $timeout ] ; then
echo "Could not start Xenstore Daemon"
exit 1
fi
${cfg.package}/bin/xenstore-write "/local/domain/0/name" "Domain-0"
${cfg.package}/bin/xenstore-write "/local/domain/0/domid" 0
# Exit if we timed out
if ! [ $time -lt $timeout ] ; then
echo "Could not start Xenstore Daemon"
exit 1
fi
''}
echo "executing xen-init-dom0"
${cfg.package}/lib/xen/bin/xen-init-dom0
'';
};
@ -306,6 +316,7 @@ in
description = "Xen Console Daemon";
wantedBy = [ "multi-user.target" ];
after = [ "xen-store.service" ];
requires = [ "xen-store.service" ];
preStart = ''
mkdir -p /var/run/xen
${optionalString cfg.trace "mkdir -p /var/log/xen"}
@ -313,7 +324,9 @@ in
'';
serviceConfig = {
ExecStart = ''
${cfg.package}/bin/xenconsoled${optionalString cfg.trace " --log=all --log-dir=/var/log/xen"}
${cfg.package}/bin/xenconsoled\
${optionalString ((cfg.package.version >= "4.8")) " -i"}\
${optionalString cfg.trace " --log=all --log-dir=/var/log/xen"}
'';
};
};
@ -323,6 +336,7 @@ in
description = "Xen Qemu Daemon";
wantedBy = [ "multi-user.target" ];
after = [ "xen-console.service" ];
requires = [ "xen-store.service" ];
serviceConfig.ExecStart = ''
${cfg.qemu} -xen-attach -xen-domid 0 -name dom0 -M xenpv \
-nographic -monitor /dev/null -serial /dev/null -parallel /dev/null
@ -333,7 +347,7 @@ in
systemd.services.xen-watchdog = {
description = "Xen Watchdog Daemon";
wantedBy = [ "multi-user.target" ];
after = [ "xen-qemu.service" ];
after = [ "xen-qemu.service" "xen-domains.service" ];
serviceConfig.ExecStart = "${cfg.package}/bin/xenwatchdogd 30 15";
serviceConfig.Type = "forking";
serviceConfig.RestartSec = "1";
@ -426,6 +440,7 @@ in
description = "Xen domains - automatically starts, saves and restores Xen domains";
wantedBy = [ "multi-user.target" ];
after = [ "xen-bridge.service" "xen-qemu.service" ];
requires = [ "xen-bridge.service" "xen-qemu.service" ];
## To prevent a race between dhcpcd and xend's bridge setup script
## (which renames eth* to peth* and recreates eth* as a virtual
## device), start dhcpcd after xend.

2
nixos/release-combined.nix
View File

@ -52,7 +52,7 @@ in rec {
(all nixos.tests.firefox)
(all nixos.tests.firewall)
nixos.tests.gnome3.x86_64-linux # FIXME: i686-linux
(all nixos.tests.installer.zfsroot)
nixos.tests.installer.zfsroot.x86_64-linux # ZFS is 64bit only
(all nixos.tests.installer.lvm)
(all nixos.tests.installer.luksroot)
(all nixos.tests.installer.separateBoot)

18
pkgs/applications/audio/ncmpcpp/default.nix
View File

@ -1,39 +1,33 @@
{ stdenv, fetchurl, boost, mpd_clientlib, ncurses, pkgconfig, readline
, libiconv, icu
, libiconv, icu, curl
, outputsSupport ? false # outputs screen
, visualizerSupport ? false, fftw ? null # visualizer screen
, clockSupport ? false # clock screen
, unicodeSupport ? true # utf8 support
, curlSupport ? true, curl ? null # allow fetching lyrics from the internet
, taglibSupport ? true, taglib ? null # tag editor
}:
assert visualizerSupport -> (fftw != null);
assert curlSupport -> (curl != null);
assert taglibSupport -> (taglib != null);
with stdenv.lib;
stdenv.mkDerivation rec {
name = "ncmpcpp-${version}";
version = "0.7.7";
version = "0.8";
src = fetchurl {
url = "http://ncmpcpp.rybczak.net/stable/${name}.tar.bz2";
sha256 = "1vq19m36608pvw1g8nbcaqqb89wsw05v35pi45xwr20z7g4bxg5p";
sha256 = "0nj6ky805a55acj0w57sbn3vfmmkbqp97rhbi0q9848n10f2l3rg";
};
configureFlags = [ "BOOST_LIB_SUFFIX=" ]
++ optional outputsSupport "--enable-outputs"
++ optional visualizerSupport "--enable-visualizer --with-fftw"
++ optional clockSupport "--enable-clock"
++ optional unicodeSupport "--enable-unicode"
++ optional curlSupport "--with-curl"
++ optional taglibSupport "--with-taglib";
nativeBuildInputs = [ pkgconfig ];
buildInputs = [ boost mpd_clientlib ncurses readline libiconv icu ]
++ optional curlSupport curl
buildInputs = [ boost mpd_clientlib ncurses readline libiconv icu curl ]
++ optional visualizerSupport fftw
++ optional taglibSupport taglib;
@ -41,7 +35,7 @@ stdenv.mkDerivation rec {
description = "A featureful ncurses based MPD client inspired by ncmpc";
homepage = http://ncmpcpp.rybczak.net/;
license = licenses.gpl2Plus;
maintainers = with maintainers; [ lovek323 mornfall koral ];
platforms = platforms.linux;
maintainers = with maintainers; [ jfrankenau koral lovek323 mornfall ];
platforms = platforms.all;
};
}

29
pkgs/applications/graphics/guetzli/default.nix Normal file
View File

@ -0,0 +1,29 @@
{ stdenv, libpng, fetchFromGitHub, pkgconfig }:
let
version = "1.0.1";
in
stdenv.mkDerivation {
name = "guetzli-${version}";
src = fetchFromGitHub {
owner = "google";
repo = "guetzli";
rev = "v${version}";
sha256 = "1wy9wfvyradp0aigfv8yijvj0dgb5kpq2yf2xki15f605jc1r5dm";
};
nativeBuildInputs = [ pkgconfig ];
buildInputs = [ libpng ];
installPhase = ''
mkdir -p $out/bin
install bin/Release/guetzli $out/bin/
'';
meta = {
description = "Perceptual JPEG encoder";
longDescription = "Guetzli is a JPEG encoder that aims for excellent compression density at high visual quality.";
homepage = "https://github.com/google/guetzli";
license = stdenv.lib.licenses.asl20;
platforms = stdenv.lib.platforms.x86_64;
maintainers = [ stdenv.lib.maintainers.seppeljordan ];
};
}

5
pkgs/applications/misc/krename/default.nix
View File

@ -1,7 +1,8 @@
{
mkDerivation, fetchFromGitHub, lib,
extra-cmake-modules, kdoctools, wrapGAppsHook,
kconfig, kinit, kjsembed, taglib, exiv2, podofo
kconfig, kinit, kjsembed, taglib, exiv2, podofo,
kcrash
}:
let
@ -26,5 +27,5 @@ in mkDerivation rec {
buildInputs = [ taglib exiv2 podofo ];
nativeBuildInputs = [ extra-cmake-modules kdoctools wrapGAppsHook ];
propagatedBuildInputs = [ kconfig kinit kjsembed ];
propagatedBuildInputs = [ kconfig kcrash kinit kjsembed ];
}

3
pkgs/applications/misc/ranger/default.nix
View File

@ -28,6 +28,9 @@ pythonPackages.buildPythonApplication rec {
'';
preConfigure = ''
substituteInPlace ranger/data/scope.sh \
--replace "/bin/echo" "echo"
substituteInPlace ranger/__init__.py \
--replace "DEFAULT_PAGER = 'less'" "DEFAULT_PAGER = '${stdenv.lib.getBin less}/bin/less'"

13
pkgs/applications/misc/redshift-plasma-applet/default.nix
View File

@ -1,6 +1,6 @@
{ stdenv, cmake, plasma-framework, redshift, fetchFromGitHub, }:
{ stdenv, cmake, extra-cmake-modules, plasma-framework, redshift, fetchFromGitHub, }:
let version = "1.0.17"; in
let version = "1.0.18"; in
stdenv.mkDerivation {
name = "redshift-plasma-applet-${version}";
@ -9,7 +9,7 @@ stdenv.mkDerivation {
owner = "kotelnik";
repo = "plasma-applet-redshift-control";
rev = "v${version}";
sha256 = "1lp1rb7i6c18lrgqxsglbvyvzh71qbm591abrbhw675ii0ca9hgj";
sha256 = "122nnbafa596rxdxlfshxk45lzch8c9342bzj7kzrsjkjg0xr9pq";
};
patchPhase = ''
@ -24,17 +24,18 @@ stdenv.mkDerivation {
"'${redshift}/bin/redshift -V'"
'';
buildInputs = [
nativeBuildInputs = [
cmake
plasma-framework
extra-cmake-modules
];
buildInputs = [ plasma-framework ];
meta = with stdenv.lib; {
description = "KDE Plasma 5 widget for controlling Redshift";
homepage = https://github.com/kotelnik/plasma-applet-redshift-control;
license = licenses.gpl2Plus;
platforms = platforms.linux;
maintainers = with maintainers; [ benley ];
maintainers = with maintainers; [ benley zraexy ];
};
}

6
pkgs/applications/misc/vifm/default.nix
View File

@ -6,11 +6,11 @@
stdenv.mkDerivation rec {
name = "vifm-${version}";
version = "0.8.2";
version = "0.9";
src = fetchurl {
url = "mirror://sourceforge/project/vifm/vifm/${name}.tar.bz2";
sha256 = "07r15kq7kjl3a41sd11ncpsii866xxps4f90zh3lv8jqcrv6silb";
url = "https://github.com/vifm/vifm/releases/download/v${version}/vifm-${version}.tar.bz2";
sha256 = "1zd72vcgir3g9rhs2iyca13qf5fc0b1f22y20f5gy92c3sfwj45b";
};
nativeBuildInputs = [ pkgconfig ];

22
pkgs/applications/networking/cluster/terraform/default.nix
View File

@ -48,25 +48,9 @@ in {
sha256 = "0ibgpcpvz0bmn3cw60nzsabsrxrbmmym1hv7fx6zmjxiwd68w5gb";
};
terraform_0_9_4 = generic {
version = "0.9.4";
sha256 = "07vcmjyl0y48hm5lqqzdd51hmrxapvywzbdkg5f3rcqd7dn9c2xs";
postPatch = ''
rm builtin/providers/dns/data_dns_cname_record_set_test.go
rm builtin/providers/vsphere/resource_vsphere_file_test.go
'';
doCheck = true;
};
terraform_0_9_6 = generic {
version = "0.9.6";
sha256 = "1f6z1zkklzpqgc7akgdz1g306ccmhni5lmg7i6g762n3qai60bnv";
doCheck = true;
};
terraform_0_9_9 = generic {
version = "0.9.9";
sha256 = "1pa9dd87dcjnn7fm1qn63da5qx87l7xjqlwiczrswcjfbismvl1p";
terraform_0_9_10 = generic {
version = "0.9.10";
sha256 = "0sg8czfn4hh7cf7zcdqwkygsvm9p47f5bi6kbl37bx9rn6bi5m6s";
doCheck = true;
};
}

4
pkgs/applications/networking/instant-messengers/mcabber/default.nix
View File

@ -4,11 +4,11 @@
stdenv.mkDerivation rec {
name = "mcabber-${version}";
version = "1.0.5";
version = "1.1.0";
src = fetchurl {
url = "http://mcabber.com/files/mcabber-${version}.tar.bz2";
sha256 = "0ixdzk5b3s31a4bdfqgqrsiq7vbgdzhqr49p9pz9cq9bgn0h1wm0";
sha256 = "1ggh865p1rf10ffsnf4g6qv9i8bls36dxdb1nzs5r9vdqci2rz04";
};
buildInputs = [ openssl ncurses pkgconfig glib loudmouth libotr gpgme ];

8
pkgs/applications/networking/ipfs/default.nix
View File

@ -2,15 +2,15 @@
buildGoPackage rec {
name = "ipfs-${version}";
version = "0.4.9";
rev = "7ea34c6c6ed18e886f869a1fbe725a848d13695c";
version = "0.4.10";
rev = "4679f806bd00c0a5299c22c82d1fbfdbad928e6d";
goPackagePath = "github.com/ipfs/go-ipfs";
extraSrcPaths = [
(fetchgx {
inherit name src;
sha256 = "1xgk9gdnlcxkrpj98h2mrnlpr9b8084k4q926i4pbmxipwxkwl4b";
sha256 = "1khlsahv9vqx3h2smif5wdyb56jrza415hqid7883pqimfi66g3x";
})
];
@ -18,7 +18,7 @@ buildGoPackage rec {
owner = "ipfs";
repo = "go-ipfs";
inherit rev;
sha256 = "1n2m2yah54cx4i9nlcsmljrwqi3wqxih517y8jpyjij6wraa334j";
sha256 = "1j3az0nhjisb5dxp1a4g8w17y17xjikvcsy4qrg0fm43ybpkhhvw";
};
meta = with stdenv.lib; {

20
pkgs/applications/networking/mailreaders/neomutt/default.nix
View File

@ -1,20 +1,20 @@
{ stdenv, fetchFromGitHub, which, autoreconfHook, ncurses, perl
, cyrus_sasl, gdbm, gpgme, kerberos, libidn, notmuch, openssl, lmdb, libxslt, docbook_xsl }:
, cyrus_sasl, gss, gpgme, kerberos, libidn, notmuch, openssl, lmdb, libxslt, docbook_xsl }:
stdenv.mkDerivation rec {
version = "20170602";
version = "20170609";
name = "neomutt-${version}";
src = fetchFromGitHub {
owner = "neomutt";
repo = "neomutt";
rev = "neomutt-${version}";
sha256 = "0rpvxmv10ypl7la4nmp0s02ixmm9g5pn9g9ms8ygzsix9pa86w45";
sha256 = "015dd6rphvqdmnv477f1is22l7n5gvcvyblbyp0ggbp64650k0bz";
};
nativeBuildInputs = [ autoreconfHook docbook_xsl libxslt.bin which ];
buildInputs = [
cyrus_sasl gdbm gpgme kerberos libidn ncurses
cyrus_sasl gss gpgme kerberos libidn ncurses
notmuch openssl perl lmdb
];
@ -28,23 +28,13 @@ stdenv.mkDerivation rec {
configureFlags = [
"--enable-debug"
"--enable-gpgme"
"--enable-hcache"
"--enable-imap"
"--enable-notmuch"
"--enable-pgp"
"--enable-pop"
"--enable-sidebar"
"--enable-keywords"
"--enable-smtp"
"--enable-nntp"
"--enable-compressed"
"--with-homespool=mailbox"
"--with-gss"
"--with-mailpath="
"--with-ssl"
"--with-sasl"
"--with-curses"
"--with-regex"
"--with-idn"
"--with-lmdb"
@ -61,6 +51,6 @@ stdenv.mkDerivation rec {
homepage = http://www.neomutt.org;
license = stdenv.lib.licenses.gpl2Plus;
platforms = platforms.unix;
maintainers = with maintainers; [ cstrahan vrthra erikryb ];
maintainers = with maintainers; [ cstrahan erikryb jfrankenau vrthra ];
};
}

4
pkgs/applications/networking/syncthing/default.nix
View File

@ -1,4 +1,4 @@
{ stdenv, lib, fetchFromGitHub, go, pkgs, removeReferencesTo }:
{ stdenv, lib, fetchFromGitHub, go, procps, removeReferencesTo }:
stdenv.mkDerivation rec {
version = "0.14.30";
@ -31,7 +31,7 @@ stdenv.mkDerivation rec {
'' + lib.optionalString (stdenv.isLinux) ''
substitute etc/linux-systemd/system/syncthing-resume.service \
$out/lib/systemd/system/syncthing-resume.service \
--replace /usr/bin/pkill ${pkgs.procps}/bin/pkill
--replace /usr/bin/pkill ${procps}/bin/pkill
substitute etc/linux-systemd/system/syncthing@.service \
$out/lib/systemd/system/syncthing@.service \

2
pkgs/applications/office/libreoffice/default.nix
View File

@ -158,7 +158,7 @@ in stdenv.mkDerivation rec {
mkdir -p "$out/share/gsettings-schemas/collected-for-libreoffice/glib-2.0/schemas/"
for a in sbase scalc sdraw smath swriter spadmin simpress soffice; do
for a in sbase scalc sdraw smath swriter simpress soffice; do
ln -s $out/lib/libreoffice/program/$a $out/bin/$a
wrapProgram "$out/bin/$a" \
--prefix XDG_DATA_DIRS : \

6
pkgs/applications/video/makemkv/default.nix
View File

@ -4,17 +4,17 @@
stdenv.mkDerivation rec {
name = "makemkv-${ver}";
ver = "1.10.5";
ver = "1.10.6";
builder = ./builder.sh;
src_bin = fetchurl {
url = "http://www.makemkv.com/download/makemkv-bin-${ver}.tar.gz";
sha256 = "00jym62yga4m146lbz6dwdy6rgrwbc0kgmpcarri0prdwjsb8l6x";
sha256 = "99d68e4e0166c9a4e2dce6638e19cbe312b5981f6e1811ed0987578ceefac3e3";
};
src_oss = fetchurl {
url = "http://www.makemkv.com/download/makemkv-oss-${ver}.tar.gz";
sha256 = "0kanj0mh09sn5wlc4jl5ykbhdq1kpwjhmh1ck990dhkxb2m3rvaa";
sha256 = "ab028ba05364f2d899b76e6a7392c9ef555379de2ef4732e1de27c23fd78d235";
};
buildInputs = [openssl qt4 mesa zlib pkgconfig libav];

4
pkgs/applications/video/mkvtoolnix/default.nix
View File

@ -10,13 +10,13 @@ with stdenv.lib;
stdenv.mkDerivation rec {
name = "mkvtoolnix-${version}";
version = "12.0.0";
version = "13.0.0";
src = fetchFromGitHub {
owner = "mbunkus";
repo = "mkvtoolnix";
rev = "release-${version}";
sha256 = "1xn24f9046q2lr1xbl02cpmqa4fhhxqjc14j14c9r6qfc4ix4n9w";
sha256 = "0dz86fzv19wknd8p31nnx2imj80v7m944ssapp8fmq9hkc36m777";
};
nativeBuildInputs = [ pkgconfig autoconf automake gettext drake ruby docbook_xsl libxslt ];

4
pkgs/applications/video/obs-studio/default.nix
View File

@ -26,13 +26,13 @@ let
optional = stdenv.lib.optional;
in stdenv.mkDerivation rec {
name = "obs-studio-${version}";
version = "19.0.2";
version = "19.0.3";
src = fetchFromGitHub {
owner = "jp9000";
repo = "obs-studio";
rev = "${version}";
sha256 = "0sawpk2yr52frdm4pkvahc11i1s1jlm7i07crhkxa8342sdc70ab";
sha256 = "1qh69bw848l61fmh6n5q86yl3djmvzh76ln044ngi2k69a9bl94b";
};
patches = [ ./find-xcb.patch ];

4
pkgs/applications/video/streamlink/default.nix
View File

@ -1,14 +1,14 @@
{ stdenv, pythonPackages, fetchFromGitHub, rtmpdump, ffmpeg }:
pythonPackages.buildPythonApplication rec {
version = "0.6.0";
version = "0.7.0";
name = "streamlink-${version}";
src = fetchFromGitHub {
owner = "streamlink";
repo = "streamlink";
rev = "${version}";
sha256 = "0602mybh9qrxbalnpg930prjfmfkfiwdyr6iz4byfzv0qrwa08yq";
sha256 = "0knh7lw6bv1vix3p40hjp5lc0z9pavvx6rncviw5h095rzcw5287";
};
buildInputs = with pythonPackages; [ pytest mock ];

217
pkgs/applications/virtualization/xen/4.8.nix Normal file
View File

@ -0,0 +1,217 @@
{ stdenv, callPackage, fetchurl, fetchpatch, fetchgit
, withInternalQemu ? true
, withInternalTraditionalQemu ? true
, withInternalSeabios ? true
, withSeabios ? !withInternalSeabios, seabios ? null
, withInternalOVMF ? false # FIXME: tricky to build
, withOVMF ? false, OVMF
, withLibHVM ? true
# qemu
, udev, pciutils, xorg, SDL, pixman, acl, glusterfs, spice_protocol, usbredir
, alsaLib
, ... } @ args:
assert withInternalSeabios -> !withSeabios;
assert withInternalOVMF -> !withOVMF;
with stdenv.lib;
# Patching XEN? Check the XSAs at
# https://xenbits.xen.org/xsa/
# and try applying all the ones we don't have yet.
let
xsaPatch = { name , sha256 }: (fetchpatch {
url = "https://xenbits.xen.org/xsa/xsa${name}.patch";
inherit sha256;
});
qemuDeps = [
udev pciutils xorg.libX11 SDL pixman acl glusterfs spice_protocol usbredir
alsaLib
];
in
callPackage (import ./generic.nix (rec {
version = "4.8.1";
src = fetchurl {
url = "http://bits.xensource.com/oss-xen/release/${version}/xen-${version}.tar.gz";
sha256 = "158kb1w61jmwxi3fc560s4269hhpxrin9xhm60ljj52njhxias8x";
};
# Sources needed to build tools and firmwares.
xenfiles = optionalAttrs withInternalQemu {
"qemu-xen" = {
src = fetchgit {
url = https://xenbits.xen.org/git-http/qemu-xen.git;
rev = "refs/tags/qemu-xen-${version}";
sha256 = "1v19pp86kcgwvsbkrdrn4rlaj02i4054avw8k70w1m0rnwgcsdbs";
};
buildInputs = qemuDeps;
patches = [
(xsaPatch {
name = "216-qemuu";
sha256 = "09gp980qdlfpfmxy0nk7ncyaa024jnrpzx9gpq2kah21xygy5ma1";
})
];
meta.description = "Xen's fork of upstream Qemu";
};
} // optionalAttrs withInternalTraditionalQemu {
"qemu-xen-traditional" = {
src = fetchgit {
url = https://xenbits.xen.org/git-http/qemu-xen-traditional.git;
rev = "refs/tags/xen-${version}";
sha256 = "0mryap5y53r09m7qc0b821f717ghwm654r8c3ik1w7adzxr0l5qk";
};
buildInputs = qemuDeps;
patches = [
];
postPatch = ''
substituteInPlace xen-hooks.mak \
--replace /usr/include/pci ${pciutils}/include/pci
'';
meta.description = "Xen's fork of upstream Qemu that uses old device model";
};
} // optionalAttrs withInternalSeabios {
"firmware/seabios-dir-remote" = {
src = fetchgit {
url = https://xenbits.xen.org/git-http/seabios.git;
rev = "f0cdc36d2f2424f6b40438f7ee7cc502c0eff4df";
sha256 = "1wq5pjkjrfzqnq3wyr15mcn1l4c563m65gdyf8jm97kgb13pwwfm";
};
patches = [ ./0000-qemu-seabios-enable-ATA_DMA.patch ];
meta.description = "Xen's fork of Seabios";
};
} // optionalAttrs withInternalOVMF {
"firmware/ovmf-dir-remote" = {
src = fetchgit {
url = https://xenbits.xen.org/git-http/ovmf.git;
rev = "173bf5c847e3ca8b42c11796ce048d8e2e916ff8";
sha256 = "07zmdj90zjrzip74fvd4ss8n8njk6cim85s58mc6snxmqqv7gmcr";
};
meta.description = "Xen's fork of OVMF";
};
} // {
# TODO: patch Xen to make this optional?
"firmware/etherboot/ipxe.git" = {
src = fetchgit {
url = https://git.ipxe.org/ipxe.git;
rev = "356f6c1b64d7a97746d1816cef8ca22bdd8d0b5d";
sha256 = "15n400vm3id5r8y3k6lrp9ab2911a9vh9856f5gvphkazfnmns09";
};
meta.description = "Xen's fork of iPXE";
};
} // optionalAttrs withLibHVM {
"xen-libhvm-dir-remote" = {
src = fetchgit {
name = "xen-libhvm";
url = https://github.com/michalpalka/xen-libhvm;
rev = "83065d36b36d6d527c2a4e0f5aaf0a09ee83122c";
sha256 = "1jzv479wvgjkazprqdzcdjy199azmx2xl3pnxli39kc5mvjz3lzd";
};
buildPhase = ''
make
cd biospt
cc -Wall -g -D_LINUX -Wstrict-prototypes biospt.c -o biospt -I../libhvm -L../libhvm -lxenhvm
'';
installPhase = ''
make install
cp biospt/biospt $out/bin/
'';
meta = {
description = ''
Helper library for reading ACPI and SMBIOS firmware values
from the host system for use with the HVM guest firmware
pass-through feature in Xen'';
license = licenses.bsd2;
};
};
};
configureFlags = []
++ optional (!withInternalQemu) "--with-system-qemu" # use qemu from PATH
++ optional (withInternalTraditionalQemu) "--enable-qemu-traditional"
++ optional (!withInternalTraditionalQemu) "--disable-qemu-traditional"
++ optional (withSeabios) "--with-system-seabios=${seabios}"
++ optional (!withInternalSeabios && !withSeabios) "--disable-seabios"
++ optional (withOVMF) "--with-system-ovmf=${OVMF.fd}/FV/OVMF.fd"
++ optional (withInternalOVMF) "--enable-ovmf";
patches =
[ (xsaPatch {
name = "213-4.8";
sha256 = "0ia3zr6r3bqy2h48fdy7p0iz423lniy3i0qkdvzgv5a8m80darr2";
})
(xsaPatch {
name = "214";
sha256 = "0qapzx63z0yl84phnpnglpkxp6b9sy1y7cilhwjhxyigpfnm2rrk";
})
(xsaPatch {
name = "217";
sha256 = "1khs5ilif14dzcm7lmikjzkwsrfzlmir1rgrgzkc411gf18ylzmj";
})
(xsaPatch {
name = "218-4.8/0001-gnttab-fix-unmap-pin-accounting-race";
sha256 = "0r363frai239r2wmwxi48kcr50gbk5l64nja0h9lppi3z2y3dkdd";
})
(xsaPatch {
name = "218-4.8/0002-gnttab-Avoid-potential-double-put-of-maptrack-entry";
sha256 = "07wm06i7frv7bsaykakx3g9h0hfqv96zcadvwf6wv194dggq1plc";
})
(xsaPatch {
name = "218-4.8/0003-gnttab-correct-maptrack-table-accesses";
sha256 = "0ad0irc3p4dmla8sp3frxbh2qciji1dipkslh0xqvy2hyf9p80y9";
})
(xsaPatch {
name = "219-4.8";
sha256 = "16q7kiamy86x8qdvls74wmq5j72kgzgdilryig4q1b21mp0ij1jq";
})
(xsaPatch {
name = "220-4.8";
sha256 = "0214qyqx7qap5y1pdi9fm0vz4y2fbyg71gaq36fisknj35dv2mh5";
})
(xsaPatch {
name = "221";
sha256 = "1mcr1nqgxyjrkywdg7qhlfwgz7vj2if1dhic425vgd41p9cdgl26";
})
(xsaPatch {
name = "222-1";
sha256 = "0x02x4kqwfw255638fh2zcxwig1dy6kadlmqim1jgnjgmrvvqas2";
})
(xsaPatch {
name = "222-2-4.8";
sha256 = "1xhyp6q3c5l8djh965g1i8201m2wvhms8k886h4sn30hks38giin";
})
(xsaPatch {
name = "224-4.8/0001-gnttab-Fix-handling-of-dev_bus_addr-during-unmap";
sha256 = "1k326yan5811qzyvpdfkv801a19nyd09nsqayi8gyh58xx9c21m4";
})
(xsaPatch {
name = "224-4.8/0002-gnttab-never-create-host-mapping-unless-asked-to";
sha256 = "06nj1x59bbx9hrj26xmvbw8z805lfqhld9hm0ld0fs6dmcpqzcck";
})
(xsaPatch {
name = "224-4.8/0003-gnttab-correct-logic-to-get-page-references-during-m";
sha256 = "0kmag6fdsskgplcvzqp341yfi6pgc14wvjj58bp7ydb9hdk53qx2";
})
(xsaPatch {
name = "224-4.8/0004-gnttab-__gnttab_unmap_common_complete-is-all-or-noth";
sha256 = "1ww80pi7jr4gjpymkcw8qxmr5as18b2asdqv35527nqprylsff9f";
})
];
# Fix build on Glibc 2.24.
NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
postPatch = ''
# Avoid a glibc >= 2.25 deprecation warnings that get fatal via -Werror.
sed 1i'#include <sys/sysmacros.h>' \
-i tools/blktap2/control/tap-ctl-allocate.c \
-i tools/libxl/libxl_device.c
'';
})) args

23
pkgs/applications/virtualization/xen/generic.nix
View File

@ -14,7 +14,7 @@ config:
# Scripts
, coreutils, gawk, gnused, gnugrep, diffutils, multipath-tools
, iproute, inetutils, iptables, bridge-utils, openvswitch, nbd, drbd
, lvm2, utillinux, procps
, lvm2, utillinux, procps, systemd
# Documentation
# python2Packages.markdown
@ -61,7 +61,7 @@ stdenv.mkDerivation (rec {
libiconv libuuid ncurses openssl perl python2Packages.python xz yajl zlib
# oxenstored
ocamlPackages.findlib ocamlPackages.ocaml
ocamlPackages.findlib ocamlPackages.ocaml systemd
# Python fixes
python2Packages.wrapPython
@ -153,12 +153,19 @@ stdenv.mkDerivation (rec {
substituteInPlace tools/xenstat/Makefile \
--replace /usr/include/curses.h ${ncurses.dev}/include/curses.h
# TODO: use this as a template and support our own if-up scripts instead?
substituteInPlace tools/hotplug/Linux/xen-backend.rules.in \
--replace "@XEN_SCRIPT_DIR@" $out/etc/xen/scripts
${optionalString (config.version >= "4.8") ''
substituteInPlace tools/hotplug/Linux/launch-xenstore.in \
--replace /bin/mkdir mkdir
''}
# blktap is not provided by xen, but by xapi
sed -i '/blktap/d' tools/hotplug/Linux/xen-backend.rules.in
${optionalString (config.version < "4.6") ''
# TODO: use this as a template and support our own if-up scripts instead?
substituteInPlace tools/hotplug/Linux/xen-backend.rules.in \
--replace "@XEN_SCRIPT_DIR@" $out/etc/xen/scripts
# blktap is not provided by xen, but by xapi
sed -i '/blktap/d' tools/hotplug/Linux/xen-backend.rules.in
''}
${withTools "patches" (name: x: ''
${concatMapStringsSep "\n" (p: ''
@ -191,7 +198,7 @@ stdenv.mkDerivation (rec {
'';
installPhase = ''
mkdir -p $out $out/share
mkdir -p $out $out/share $out/share/man
cp -prvd dist/install/nix/store/*/* $out/
cp -prvd dist/install/boot $out/boot
cp -prvd dist/install/etc $out

50
pkgs/applications/virtualization/xen/packages.nix
View File

@ -57,6 +57,56 @@ rec {
};
};
xen_4_8-vanilla = callPackage ./4.8.nix {
# At the very least included seabios and etherboot need gcc49,
# so we have to build all of it with gcc49.
stdenv = overrideCC stdenv gcc49;
meta = {
description = "vanilla";
longDescription = ''
Vanilla version of Xen. Uses forks of Qemu and Seabios bundled
with Xen. This gives vanilla experince, but wastes space and
build time: typical NixOS setup that runs lots of VMs will
build three different versions of Qemu when using this (two
forks and upstream).
'';
};
};
xen_4_8-slim = xen_4_8-vanilla.override {
withInternalQemu = false;
withInternalTraditionalQemu = true;
withInternalSeabios = false;
withSeabios = true;
meta = {
description = "slim";
longDescription = ''
Slimmed-down version of Xen that reuses nixpkgs packages as
much as possible. Different parts may get out of sync, but
this builds faster and uses less space than vanilla. Use with
`qemu_xen` from nixpkgs.
'';
};
};
xen_4_8-light = xen_4_8-vanilla.override {
withInternalQemu = false;
withInternalTraditionalQemu = false;
withInternalSeabios = false;
withSeabios = true;
meta = {
description = "light";
longDescription = ''
Slimmed-down version of Xen without `qemu-traditional` (you
don't need it if you don't know what it is). Use with
`qemu_xen-light` from nixpkgs.
'';
};
};
xen-vanilla = xen_4_5-vanilla;
xen-slim = xen_4_5-slim;
xen-light = xen_4_5-light;

127
pkgs/applications/window-managers/i3/default.nix
View File

@ -1,72 +1,85 @@
{ fetchurl, stdenv, which, pkgconfig, makeWrapper, libxcb, xcbutilkeysyms
, xcbutil, xcbutilwm, xcbutilxrm, libstartup_notification, libX11, pcre, libev
, yajl, xcb-util-cursor, coreutils, perl, pango, perlPackages, libxkbcommon
, xorgserver, xvfb_run }:
, xorgserver, xvfb_run, symlinkJoin, configFile ? null }:
stdenv.mkDerivation rec {
name = "i3-${version}";
let
version = "4.13";
src = fetchurl {
url = "http://i3wm.org/downloads/${name}.tar.bz2";
sha256 = "12ngz32swh9n85xy0cz1lq16aqi9ys5hq19v589q9a97wn1k3hcl";
};
i3 = stdenv.mkDerivation rec {
name = "i3-${version}";
nativeBuildInputs = [ which pkgconfig makeWrapper ];
src = fetchurl {
url = "http://i3wm.org/downloads/${name}.tar.bz2";
sha256 = "12ngz32swh9n85xy0cz1lq16aqi9ys5hq19v589q9a97wn1k3hcl";
};
buildInputs = [
libxcb xcbutilkeysyms xcbutil xcbutilwm xcbutilxrm libxkbcommon
libstartup_notification libX11 pcre libev yajl xcb-util-cursor perl pango
perlPackages.AnyEventI3 perlPackages.X11XCB perlPackages.IPCRun
perlPackages.ExtUtilsPkgConfig perlPackages.TestMore perlPackages.InlineC
xorgserver xvfb_run
];
nativeBuildInputs = [ which pkgconfig makeWrapper ];
configureFlags = [ "--disable-builddir" ];
buildInputs = [
libxcb xcbutilkeysyms xcbutil xcbutilwm xcbutilxrm libxkbcommon
libstartup_notification libX11 pcre libev yajl xcb-util-cursor perl pango
perlPackages.AnyEventI3 perlPackages.X11XCB perlPackages.IPCRun
perlPackages.ExtUtilsPkgConfig perlPackages.TestMore perlPackages.InlineC
xorgserver xvfb_run
];
enableParallelBuilding = true;
configureFlags = [ "--disable-builddir" ];
postPatch = ''
patchShebangs .
'';
enableParallelBuilding = true;
# Tests have been failing (at least for some people in some cases)
# and have been disabled until someone wants to fix them. Some
# initial digging uncovers that the tests call out to `git`, which
# they shouldn't, and then even once that's fixed have some
# perl-related errors later on. For more, see
# https://github.com/NixOS/nixpkgs/issues/7957
doCheck = false; # stdenv.system == "x86_64-linux";
checkPhase = stdenv.lib.optionalString (stdenv.system == "x86_64-linux")
''
(cd testcases && xvfb-run ./complete-run.pl -p 1 --keep-xserver-output)
! grep -q '^not ok' testcases/latest/complete-run.log
'';
postInstall = ''
wrapProgram "$out/bin/i3-save-tree" --prefix PERL5LIB ":" "$PERL5LIB"
for program in $out/bin/i3-sensible-*; do
sed -i 's/which/command -v/' $program
done
'';
separateDebugInfo = true;
meta = with stdenv.lib; {
description = "A tiling window manager";
homepage = "http://i3wm.org";
maintainers = with maintainers; [ garbas modulistic fpletz ];
license = licenses.bsd3;
platforms = platforms.all;
longDescription = ''
A tiling window manager primarily targeted at advanced users and
developers. Based on a tree as data structure, supports tiling,
stacking, and tabbing layouts, handled dynamically, as well as
floating windows. Configured via plain text file. Multi-monitor.
UTF-8 clean.
postPatch = ''
patchShebangs .
'';
};
# Tests have been failing (at least for some people in some cases)
# and have been disabled until someone wants to fix them. Some
# initial digging uncovers that the tests call out to `git`, which
# they shouldn't, and then even once that's fixed have some
# perl-related errors later on. For more, see
# https://github.com/NixOS/nixpkgs/issues/7957
doCheck = false; # stdenv.system == "x86_64-linux";
checkPhase = stdenv.lib.optionalString (stdenv.system == "x86_64-linux")
''
(cd testcases && xvfb-run ./complete-run.pl -p 1 --keep-xserver-output)
! grep -q '^not ok' testcases/latest/complete-run.log
'';
postInstall = ''
wrapProgram "$out/bin/i3-save-tree" --prefix PERL5LIB ":" "$PERL5LIB"
for program in $out/bin/i3-sensible-*; do
sed -i 's/which/command -v/' $program
done
'';
separateDebugInfo = true;
meta = with stdenv.lib; {
description = "A tiling window manager";
homepage = "http://i3wm.org";
maintainers = with maintainers; [ garbas modulistic fpletz ];
license = licenses.bsd3;
platforms = platforms.all;
longDescription = ''
A tiling window manager primarily targeted at advanced users and
developers. Based on a tree as data structure, supports tiling,
stacking, and tabbing layouts, handled dynamically, as well as
floating windows. Configured via plain text file. Multi-monitor.
UTF-8 clean.
'';
};
};
in if configFile == null then i3 else symlinkJoin {
name = "i3-with-config-${version}";
paths = [ i3 ];
buildInputs = [ makeWrapper ];
postBuild = ''
wrapProgram $out/bin/i3 \
--add-flags "-c ${configFile}"
'';
}

7
pkgs/applications/window-managers/i3/lock.nix
View File

@ -2,11 +2,12 @@
pam, libX11, libev, cairo, libxkbcommon, libxkbfile }:
stdenv.mkDerivation rec {
name = "i3lock-2.8";
name = "i3lock-${version}";
version = "2.9.1";
src = fetchurl {
url = "http://i3wm.org/i3lock/${name}.tar.bz2";
sha256 = "028fc0f74df10826514d5a4ed38f6895935d1f5d47ca9fcffc64b076aaf6e2f4";
url = "https://i3wm.org/i3lock/${name}.tar.bz2";
sha256 = "1467ha4ssbfjk1jh0ya2i5ljzm554ln18nyrppvsipg8shb1cshh";
};
buildInputs = [ which pkgconfig libxcb xcbutilkeysyms xcbutilimage pam libX11

52
pkgs/build-support/release/default.nix
View File

@ -73,4 +73,56 @@ rec {
done
'';
/* Create a channel job which success depends on the success of all of
its contituents. Channel jobs are a special type of jobs that are
listed in the channel tab of Hydra and that can be suscribed.
A tarball of the src attribute is distributed via the channel.
- constituents: a list of derivations on which the channel success depends.
- name: the channel name that will be used in the hydra interface.
- src: should point to the root folder of the nix-expressions used by the
channel, typically a folder containing a `default.nix`.
channel {
constituents = [ foo bar baz ];
name = "my-channel";
src = ./.;
};
*/
channel =
{ name, src, constituents ? [], meta ? {}, isNixOS ? true, ... }@args:
stdenv.mkDerivation ({
preferLocalBuild = true;
_hydraAggregate = true;
phases = [ "unpackPhase" "patchPhase" "installPhase" ];
patchPhase = stdenv.lib.optionalString isNixOS ''
touch .update-on-nixos-rebuild
'';
installPhase = ''
mkdir -p $out/{tarballs,nix-support}
tar cJf "$out/tarballs/nixexprs.tar.xz" \
--owner=0 --group=0 --mtime="1970-01-01 00:00:00 UTC" \
--transform='s!^\.!${name}!' .
echo "channel - $out/tarballs/nixexprs.tar.xz" > "$out/nix-support/hydra-build-products"
echo $constituents > "$out/nix-support/hydra-aggregate-constituents"
# Propagate build failures.
for i in $constituents; do
if [ -e "$i/nix-support/failed" ]; then
touch "$out/nix-support/failed"
fi
done
'';
meta = meta // {
isHydraChannel = true;
};
} // removeAttrs args [ "meta" ]);
}

6
pkgs/data/fonts/emacs-all-the-icons-fonts/default.nix
View File

@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
name = "emacs-all-the-icons-fonts-${version}";
version = "2.50";
version = "2.6.4";
src = fetchFromGitHub {
owner = "domtronn";
repo = "all-the-icons.el";
rev = "2.5.0";
sha256 = "125qw96rzbkv39skxk5511jrcx9hxm0fqcmny6213wzswgdn37z3";
rev = version;
sha256 = "0xwj8wyj0ywpy4rcqxz15hkr8jnffn7nrp5fnq56j360v8858q8x";
};
installPhase = ''

36
pkgs/desktops/gnome-3/extensions/caffeine/default.nix Normal file
View File

@ -0,0 +1,36 @@
{ stdenv, fetchFromGitHub, glib, gettext, bash }:
stdenv.mkDerivation rec {
name = "gnome-shell-extension-caffeine-${version}";
version = "unstable-2017-06-21";
src = fetchFromGitHub {
owner = "eonpatapon";
repo = "gnome-shell-extension-caffeine";
rev = "ce0d0d4d3a9fed4b35b82cf59609a00502862271";
sha256 = "01gf9c8nhhm78iakqf30900y6lywxks1pm5h2cs0jvp8d3ygd7sd";
};
uuid = "caffeine@patapon.info";
nativeBuildInputs = [
glib gettext
];
buildPhase = ''
${bash}/bin/bash ./update-locale.sh
${glib.dev}/bin/glib-compile-schemas --strict --targetdir=caffeine@patapon.info/schemas/ caffeine@patapon.info/schemas
'';
installPhase = ''
mkdir -p $out/share/gnome-shell/extensions
cp -r ${uuid} $out/share/gnome-shell/extensions
'';
meta = with stdenv.lib; {
description = "Fill the cup to inhibit auto suspend and screensaver";
license = licenses.gpl2;
maintainers = with maintainers; [ eperuffo ];
homepage = https://github.com/eonpatapon/gnome-shell-extension-caffeine;
};
}

7
pkgs/desktops/lumina/default.nix
View File

@ -1,16 +1,16 @@
{ stdenv, fetchFromGitHub, fluxbox, xscreensaver, desktop_file_utils, numlockx,
xorg, qtbase, qtsvg, qtmultimedia, qtx11extras, qmake, qttools, oxygen-icons5
xorg, qtbase, qtsvg, qtmultimedia, qtx11extras, qmake, qttools
}:
stdenv.mkDerivation rec {
name = "lumina-${version}";
version = "1.2.0-p1";
version = "1.3.0";
src = fetchFromGitHub {
owner = "trueos";
repo = "lumina";
rev = "v${version}";
sha256 = "0k16lcpxp9avwkadbbyqficd1wxsmwian5ji38wyax76v22yq7p6";
sha256 = "13kwlhv2qscrn52xvx0n1sqbl96fkcb5r1ixa0wazflx8dfl9ndn";
};
nativeBuildInputs = [
@ -26,7 +26,6 @@ stdenv.mkDerivation rec {
qtsvg
qtmultimedia
qtx11extras
oxygen-icons5
fluxbox
xscreensaver
desktop_file_utils

2
pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix
View File

@ -58,4 +58,6 @@ self: super: {
# https://github.com/nominolo/ghc-syb/issues/20
ghc-syb-utils = dontCheck super.ghc-syb-utils;
# Newer versions require ghc>=8.2
apply-refact = super.apply-refact_0_3_0_1;
}

32
pkgs/development/haskell-modules/configuration-hackage2nix.yaml
View File

@ -37,7 +37,7 @@ core-packages:
- ghcjs-base-0
default-package-overrides:
# LTS Haskell 8.20
# LTS Haskell 8.21
- abstract-deque ==0.3
- abstract-par ==0.3.3
- AC-Vector ==2.3.2
@ -548,7 +548,7 @@ default-package-overrides:
- distributed-process ==0.6.6
- distributed-process-simplelocalnet ==0.2.3.3
- distributed-static ==0.3.5.0
- distribution ==1.1.0.0
- distribution ==1.1.1.0
- distributive ==0.5.2
- diversity ==0.8.0.2
- djinn-ghc ==0.0.2.3
@ -605,14 +605,14 @@ default-package-overrides:
- elm-core-sources ==1.0.0
- elm-export ==0.6.0.1
- elm-export-persistent ==0.1.2
- email-validate ==2.2.0
- email-validate ==2.2.1.1
- emailaddress ==0.2.0.0
- enclosed-exceptions ==1.0.2
- encoding-io ==0.0.1
- engine-io ==1.2.16
- engine-io-wai ==1.0.6
- EntrezHTTP ==1.0.3
- entropy ==0.3.7
- entropy ==0.3.8
- enummapset ==0.5.2.1
- enummapset-th ==0.6.1.1
- enumset ==0.0.4
@ -918,7 +918,7 @@ default-package-overrides:
- hackage-security ==0.5.2.2
- hackernews ==1.1.2.0
- haddock-library ==1.4.3
- hailgun ==0.4.1.3
- hailgun ==0.4.1.4
- hailgun-simple ==0.1.0.0
- hakyll ==4.9.7.0
- half ==0.2.2.3
@ -936,7 +936,7 @@ default-package-overrides:
- happy ==1.19.5
- HaRe ==0.8.4.0
- harp ==0.4.2
- hasbolt ==0.1.1.3
- hasbolt ==0.1.2.1
- hashable ==1.2.6.1
- hashable-time ==0.2.0.1
- hashmap ==1.3.2
@ -1042,7 +1042,7 @@ default-package-overrides:
- hPDB ==1.2.0.9
- hPDB-examples ==1.2.0.7
- HPDF ==1.4.10
- hpio ==0.8.0.9
- hpio ==0.8.0.10
- hpp ==0.4.0
- hpqtypes ==1.5.1.1
- hquantlib ==0.0.4.0
@ -1233,7 +1233,7 @@ default-package-overrides:
- kan-extensions ==5.0.2
- kansas-comet ==0.4
- katip ==0.3.1.5
- katip-elasticsearch ==0.3.0.2
- katip-elasticsearch ==0.3.1.0
- kawhi ==0.2.3
- kdt ==0.2.4
- keter ==1.4.3.2
@ -1291,7 +1291,7 @@ default-package-overrides:
- LibZip ==1.0.1
- licensor ==0.2.0
- lift-generics ==0.1.1
- lifted-async ==0.9.1.1
- lifted-async ==0.9.3
- lifted-base ==0.2.3.11
- line ==2.2.0
- linear ==1.20.6
@ -1631,7 +1631,7 @@ default-package-overrides:
- post-mess-age ==0.2.1.0
- postgresql-binary ==0.9.3
- postgresql-libpq ==0.9.3.1
- postgresql-schema ==0.1.10
- postgresql-schema ==0.1.11
- postgresql-simple ==0.5.3.0
- postgresql-simple-migration ==0.1.9.0
- postgresql-simple-url ==0.2.0.0
@ -1668,7 +1668,7 @@ default-package-overrides:
- prometheus-metrics-ghc ==0.1.1
- prompt ==0.1.1.2
- proto-lens ==0.2.1.0
- proto-lens-arbitrary ==0.1.0.2
- proto-lens-arbitrary ==0.1.0.3
- proto-lens-combinators ==0.1.0.7
- proto-lens-descriptors ==0.2.1.0
- proto-lens-optparse ==0.1.0.3
@ -1699,7 +1699,7 @@ default-package-overrides:
- quickcheck-instances ==0.3.12
- quickcheck-io ==0.1.4
- quickcheck-simple ==0.1.0.1
- quickcheck-special ==0.1.0.4
- quickcheck-special ==0.1.0.5
- quickcheck-text ==0.1.2.1
- quickcheck-unicode ==1.0.1.0
- raaz ==0.1.1
@ -1731,7 +1731,7 @@ default-package-overrides:
- ReadArgs ==1.2.3
- readline ==1.0.3.0
- rebase ==1.0.8
- recursion-schemes ==5.0.1
- recursion-schemes ==5.0.2
- redis-io ==0.7.0
- redis-resp ==0.4.0
- reducers ==3.12.1
@ -2094,7 +2094,7 @@ default-package-overrides:
- textlocal ==0.1.0.5
- tf-random ==0.5
- tfp ==1.0.0.2
- th-abstraction ==0.2.2.0
- th-abstraction ==0.2.3.0
- th-data-compat ==0.0.2.2
- th-desugar ==1.6
- th-expand-syns ==0.4.3.0
@ -2130,7 +2130,7 @@ default-package-overrides:
- tinylog ==0.14.0
- tinytemplate ==0.1.2.0
- titlecase ==0.1.0.3
- tls ==1.3.10
- tls ==1.3.11
- tls-debug ==0.4.4
- token-bucket ==0.1.0.1
- tostring ==0.2.1.1
@ -2432,6 +2432,7 @@ extra-packages:
- aeson < 0.8 # newer versions don't work with GHC 7.6.x or earlier
- aeson < 1 # required by liquidhaskell-0.8.0.0
- aeson-pretty < 0.8 # required by elm compiler
- apply-refact < 0.4 # newer versions don't work with GHC 8.0.x
- binary > 0.7 && < 0.8 # keep a 7.x major release around for older compilers
- binary > 0.8 && < 0.9 # keep a 8.x major release around for older compilers
- Cabal == 1.18.* # required for cabal-install et al on old GHC versions
@ -2793,7 +2794,6 @@ dont-distribute-packages:
applicative-parsec: [ i686-linux, x86_64-linux, x86_64-darwin ]
applicative-quoters: [ i686-linux, x86_64-linux, x86_64-darwin ]
applicative-splice: [ i686-linux, x86_64-linux, x86_64-darwin ]
apply-refact: [ i686-linux, x86_64-linux, x86_64-darwin ]
ApproxFun-hs: [ i686-linux, x86_64-linux, x86_64-darwin ]
approximate: [ i686-linux, x86_64-linux, x86_64-darwin ]
approx-rand-test: [ i686-linux, x86_64-linux, x86_64-darwin ]

917
pkgs/development/haskell-modules/hackage-packages.nix
View File

File diff suppressed because it is too large Load Diff

3
pkgs/development/interpreters/perl/default.nix
View File

@ -36,7 +36,8 @@ let
./no-sys-dirs.patch
]
++ optional stdenv.isSunOS ./ld-shared.patch
++ optional stdenv.isDarwin [ ./cpp-precomp.patch ./sw_vers.patch ];
++ optional stdenv.isDarwin ./cpp-precomp.patch
++ optional (stdenv.isDarwin && versionAtLeast version "5.24") ./sw_vers.patch;
postPatch = ''
pwd="$(type -P pwd)"

7
pkgs/development/libraries/catch/default.nix
View File

@ -1,15 +1,14 @@
{ stdenv, cmake, fetchFromGitHub }:
{ stdenv, fetchFromGitHub, cmake }:
stdenv.mkDerivation rec {
name = "catch-${version}";
version = "1.9.5";
version = "1.9.6";
src = fetchFromGitHub {
owner = "philsquared";
repo = "Catch";
rev = "v${version}";
sha256 = "1in4f6w1pja8m1hvyiwx7s7gxnj6nlj1fgxw9blldffh09ikgpm2";
sha256 = "0nqnyw6haa2771748ycag4hhjb8ni32cv4f7w3h0pji212542xan";
};
nativeBuildInputs = [ cmake ];

14
pkgs/development/libraries/gdal/default.nix
View File

@ -1,6 +1,6 @@
{ stdenv, fetchurl, composableDerivation, unzip, libjpeg, libtiff, zlib
, postgresql, mysql, libgeotiff, pythonPackages, proj, geos, openssl
, libpng, sqlite, libspatialite, poppler
, libpng, sqlite, libspatialite, poppler, hdf4
, libiconv
, netcdfSupport ? true, netcdf, hdf5 , curl
}:
@ -17,15 +17,20 @@ composableDerivation.composableDerivation {} (fixed: rec {
};
buildInputs = [ unzip libjpeg libtiff libpng proj openssl sqlite
libspatialite poppler ]
libspatialite poppler hdf4 ]
++ (with pythonPackages; [ python numpy wrapPython ])
++ stdenv.lib.optional stdenv.isDarwin libiconv
++ stdenv.lib.optionals netcdfSupport [ netcdf hdf5 curl ];
hardeningDisable = [ "format" ];
# Unset CC and CXX as they confuse libtool.
preConfigure = "unset CC CXX";
# - Unset CC and CXX as they confuse libtool.
# - teach gdal that libdf is the legacy name for libhdf
preConfigure = ''
unset CC CXX
substituteInPlace configure \
--replace "-lmfhdf -ldf" "-lmfhdf -lhdf"
'';
configureFlags = [
"--with-jpeg=${libjpeg.dev}"
@ -41,6 +46,7 @@ composableDerivation.composableDerivation {} (fixed: rec {
"--with-python" # optional
"--with-static-proj4=${proj}" # optional
"--with-geos=${geos}/bin/geos-config"# optional
"--with-hdf4=${hdf4.dev}" # optional
(if netcdfSupport then "--with-netcdf=${netcdf}" else "")
];

4
pkgs/development/libraries/libutempter/default.nix
View File

@ -13,6 +13,10 @@ stdenv.mkDerivation rec {
buildInputs = [ glib ];
prePatch = ''
substituteInPlace Makefile --replace 2711 0711
'';
installFlags = [
"libdir=\${out}/lib"
"libexecdir=\${out}/lib"

6
pkgs/development/libraries/openslp/default.nix
View File

@ -11,13 +11,13 @@ stdenv.mkDerivation {
patches = [
(fetchpatch {
name = "openslp-2.0.0-null-pointer-deref.patch";
url = "https://svnweb.mageia.org/packages/cauldron/openslp/current/SOURCES/openslp-2.0.0-null-pointer-deref.patch?revision=1019712&view=co";
url = "https://src.fedoraproject.org/cgit/rpms/openslp.git/plain/openslp-2.0.0-null-pointer-deref.patch";
sha256 = "186f3rj3z2lf5h1lpbhqk0szj2a9far1p3mjqg6422f29yjfnz6a";
})
(fetchpatch {
name = "openslp-2.0.0-CVE-2016-7567.patch";
url = "https://svnweb.mageia.org/packages/cauldron/openslp/current/SOURCES/openslp-2.0.0-CVE-2016-7567.patch?revision=1057233&view=co";
sha256 = "1zrgql91vjjl2v7brlibc8jqndnjz9fclqbdn0b6fklkpwznprny";
url = "https://src.fedoraproject.org/cgit/rpms/openslp.git/plain/openslp-2.0.0-cve-2016-7567.patch";
sha256 = "0zp61axx93b7nrbsyhn2x4dnw7n9y6g4rys21hyqxk4khrnc2yr9";
})
];

5
pkgs/development/libraries/wcslib/default.nix
View File

@ -11,6 +11,11 @@ stdenv.mkDerivation rec {
sha256 ="1s2nig327g4bimd9xshlk11ww09a7mrjmsbpdcd8smsmn2kl1glb";
};
prePatch = ''
substituteInPlace GNUmakefile --replace 2775 0775
substituteInPlace C/GNUmakefile --replace 2775 0775
'';
enableParallelBuilding = true;
meta = {

30
pkgs/development/ocaml-modules/cohttp/0.19.3.nix Normal file
View File

@ -0,0 +1,30 @@
{ stdenv, buildOcaml, fetchurl, ocaml, cmdliner, re, uri_p4, fieldslib_p4
, sexplib_p4, conduit , stringext, base64, magic-mime, ounit, alcotest
, asyncSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02"
, lwt ? null, async_p4 ? null, async_ssl_p4 ? null
}:
buildOcaml rec {
name = "cohttp";
version = "0.19.3";
minimumSupportedOcamlVersion = "4.01";
src = fetchurl {
url = "https://github.com/mirage/ocaml-cohttp/archive/v${version}.tar.gz";
sha256 = "1nrzpd4h52c1hnzcgsz462676saj9zss708ng001h54dglk8i1iv";
};
buildInputs = [ alcotest cmdliner conduit magic-mime ounit lwt ]
++ stdenv.lib.optionals asyncSupport [ async_p4 async_ssl_p4 ];
propagatedBuildInputs = [ re stringext uri_p4 fieldslib_p4 sexplib_p4 base64 ];
buildFlags = "PREFIX=$(out)";
meta = with stdenv.lib; {
homepage = https://github.com/mirage/ocaml-cohttp;
description = "Very lightweight HTTP server using Lwt or Async";
license = licenses.mit;
maintainers = [ maintainers.ericbmerritt ];
};
}

49
pkgs/development/ocaml-modules/cohttp/default.nix
View File

@ -1,30 +1,35 @@
{ stdenv, buildOcaml, fetchurl, ocaml, cmdliner, re, uri_p4, fieldslib_p4
, sexplib_p4, conduit , stringext, base64, magic-mime, ounit, alcotest
, asyncSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02"
, lwt ? null, async_p4 ? null, async_ssl_p4 ? null
{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild
, ppx_fields_conv, ppx_sexp_conv
, base64, fieldslib, uri, conduit
# Optional for async and lwt support:
, async , async_ssl, cmdliner, fmt, magic-mime, ocaml_lwt, tls
}:
buildOcaml rec {
name = "cohttp";
version = "0.19.3";
stdenv.mkDerivation rec {
version = "0.22.0";
name = "ocaml${ocaml.version}-cohttp-${version}";
minimumSupportedOcamlVersion = "4.01";
src = fetchFromGitHub {
owner = "mirage";
repo = "ocaml-cohttp";
rev = "v${version}";
sha256 = "1iy4ynh0yrw8337nsa9zvgcf476im0bhccsbs0vki3c5yxw2x60d";
};
src = fetchurl {
url = "https://github.com/mirage/ocaml-cohttp/archive/v${version}.tar.gz";
sha256 = "1nrzpd4h52c1hnzcgsz462676saj9zss708ng001h54dglk8i1iv";
};
buildInputs = [ ocaml findlib ocamlbuild ppx_fields_conv ppx_sexp_conv conduit
async async_ssl cmdliner fmt magic-mime ocaml_lwt tls ];
buildInputs = [ alcotest cmdliner conduit magic-mime ounit lwt ]
++ stdenv.lib.optionals asyncSupport [ async_p4 async_ssl_p4 ];
propagatedBuildInputs = [ re stringext uri_p4 fieldslib_p4 sexplib_p4 base64 ];
propagatedBuildInputs = [ base64 fieldslib uri ];
buildFlags = "PREFIX=$(out)";
makeFlags = [ "PREFIX=$(out)" ];
meta = with stdenv.lib; {
homepage = https://github.com/mirage/ocaml-cohttp;
description = "Very lightweight HTTP server using Lwt or Async";
license = licenses.mit;
maintainers = [ maintainers.ericbmerritt ];
};
createFindlibDestdir = true;
meta = {
description = "HTTP(S) library for Lwt, Async and Mirage";
license = stdenv.lib.licenses.isc;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
inherit (ocaml.meta) platforms;
};
}

26
pkgs/development/ocaml-modules/conduit/0.10.0.nix Normal file
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@ -0,0 +1,26 @@
{ stdenv, buildOcaml, fetchurl, ocaml, sexplib_p4, stringext, uri_p4, cstruct, ipaddr_p4
, asyncSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02"
, async_p4 ? null, async_ssl_p4 ? null, lwt ? null
}:
buildOcaml rec {
name = "conduit";
version = "0.10.0";
src = fetchurl {
url = "https://github.com/mirage/ocaml-conduit/archive/v${version}.tar.gz";
sha256 = "1jz2skzsyg0axlkk9s6ahfblfrjx599wisyfs0cvn5dik9jqjadh";
};
propagatedBuildInputs = [ sexplib_p4 stringext uri_p4 cstruct ipaddr_p4 ];
buildInputs = stdenv.lib.optional (lwt != null) lwt
++ stdenv.lib.optional (asyncSupport && async_p4 != null) async_p4
++ stdenv.lib.optional (asyncSupport && async_ssl_p4 != null) async_ssl_p4;
meta = with stdenv.lib; {
homepage = https://github.com/mirage/ocaml-conduit;
description = "Resolve URIs into communication channels for Async or Lwt ";
license = licenses.mit;
maintainers = [ maintainers.ericbmerritt ];
};
}

47
pkgs/development/ocaml-modules/conduit/default.nix
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@ -1,26 +1,33 @@
{ stdenv, buildOcaml, fetchurl, ocaml, sexplib_p4, stringext, uri_p4, cstruct, ipaddr_p4
, asyncSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02"
, async_p4 ? null, async_ssl_p4 ? null, lwt ? null
{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild
, ppx_driver, ppx_sexp_conv
, ipaddr, uri, logs
, ocaml_lwt ? null
, async ? null, async_ssl ? null
, tls ? null
}:
buildOcaml rec {
name = "conduit";
version = "0.8.3";
stdenv.mkDerivation rec {
version = "0.15.4";
name = "ocaml${ocaml.version}-conduit-${version}";
src = fetchurl {
url = "https://github.com/mirage/ocaml-conduit/archive/v${version}.tar.gz";
sha256 = "5cf1a46aa0254345e5143feebe6b54bdef96314e9987f44e69f24618d620faa1";
};
src = fetchFromGitHub {
owner = "mirage";
repo = "ocaml-conduit";
rev = "v${version}";
sha256 = "1ya7jqvhl8hc22cid5myf31w5c473imdxjnl9785lavsqj3djjxq";
};
propagatedBuildInputs = [ sexplib_p4 stringext uri_p4 cstruct ipaddr_p4 ];
buildInputs = stdenv.lib.optional (lwt != null) lwt
++ stdenv.lib.optional (asyncSupport && async_p4 != null) async_p4
++ stdenv.lib.optional (asyncSupport && async_ssl_p4 != null) async_ssl_p4;
buildInputs = [ ocaml findlib ocamlbuild ppx_driver ppx_sexp_conv
ocaml_lwt async async_ssl tls ];
propagatedBuildInputs = [ ipaddr uri logs ];
meta = with stdenv.lib; {
homepage = https://github.com/mirage/ocaml-conduit;
description = "Resolve URIs into communication channels for Async or Lwt ";
license = licenses.mit;
maintainers = [ maintainers.ericbmerritt ];
};
createFindlibDestdir = true;
meta = {
description = "Network connection library for TCP and SSL";
license = stdenv.lib.licenses.isc;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
inherit (ocaml.meta) platforms;
};
}

30
pkgs/development/ocaml-modules/decompress/default.nix Normal file
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@ -0,0 +1,30 @@
{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild, topkg, opam
}:
if !stdenv.lib.versionAtLeast ocaml.version "4.03"
then throw "decompress is not available for OCaml ${ocaml.version}"
else
stdenv.mkDerivation rec {
version = "0.6";
name = "ocaml${ocaml.version}-decompress-${version}";
src = fetchFromGitHub {
owner = "mirage";
repo = "decompress";
rev = "v${version}";
sha256 = "0hfs5zrvimzvjwdg57vrxx9bb7irvlm07dk2yv3s5qhj30zimd08";
};
buildInputs = [ ocaml findlib ocamlbuild topkg opam ];
inherit (topkg) buildPhase installPhase;
meta = {
description = "Pure OCaml implementation of Zlib";
license = stdenv.lib.licenses.mit;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
inherit (ocaml.meta) platforms;
};
}

4
pkgs/development/ocaml-modules/eliom/default.nix
View File

@ -1,5 +1,5 @@
{ stdenv, fetchurl, which, ocsigen_server, ocsigen_deriving, ocaml,
js_of_ocaml, ocaml_react, ocaml_lwt, calendar, cryptokit, tyxml,
js_of_ocaml, ocaml_react, lwt, calendar, cryptokit, tyxml,
ipaddr, ocamlnet, ocaml_ssl, ocaml_pcre, ocaml_optcomp,
reactivedata, opam, ppx_tools, ppx_deriving, findlib
, ocamlbuild
@ -22,7 +22,7 @@ stdenv.mkDerivation rec
buildInputs = [ ocaml which findlib ocamlbuild ocaml_optcomp opam ppx_tools ];
propagatedBuildInputs = [ ocaml_lwt reactivedata tyxml ipaddr ocsigen_server ppx_deriving
propagatedBuildInputs = [ lwt reactivedata tyxml ipaddr ocsigen_server ppx_deriving
ocsigen_deriving js_of_ocaml
calendar cryptokit ocamlnet ocaml_react ocaml_ssl ocaml_pcre ];

19
pkgs/development/ocaml-modules/git-http/default.nix Normal file
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@ -0,0 +1,19 @@
{ stdenv, ocaml, findlib, jbuilder, git, cohttp }:
stdenv.mkDerivation rec {
name = "ocaml${ocaml.version}-git-http-${version}";
inherit (git) version src;
buildInputs = [ ocaml findlib jbuilder ];
propagatedBuildInputs = [ git cohttp ];
buildPhase = "jbuilder build -p git-http";
inherit (jbuilder) installPhase;
meta = {
description = "Client implementation of the “Smart” HTTP Git protocol in pure OCaml";
inherit (git.meta) homepage license maintainers platforms;
};
}

21
pkgs/development/ocaml-modules/git-unix/default.nix Normal file
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@ -0,0 +1,21 @@
{ stdenv, ocaml, findlib, jbuilder, git-http
, ocaml_lwt, tls, conduit, magic-mime, cmdliner, mtime
}:
stdenv.mkDerivation rec {
name = "ocaml${ocaml.version}-git-unix-${version}";
inherit (git-http) version src;
buildInputs = [ ocaml findlib jbuilder cmdliner mtime ];
propagatedBuildInputs = [ conduit git-http magic-mime ocaml_lwt tls ];
buildPhase = "jbuilder build -p git-unix";
inherit (jbuilder) installPhase;
meta = {
description = "Unix backend for the Git protocol(s)";
inherit (git-http.meta) homepage license maintainers platforms;
};
}

31
pkgs/development/ocaml-modules/git/default.nix Normal file
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@ -0,0 +1,31 @@
{ stdenv, fetchFromGitHub, ocaml, findlib, jbuilder, opam
, astring, decompress, fmt, hex, logs, mstruct, ocaml_lwt, ocamlgraph, uri
}:
stdenv.mkDerivation rec {
version = "1.11.0";
name = "ocaml${ocaml.version}-git-${version}";
src = fetchFromGitHub {
owner = "mirage";
repo = "ocaml-git";
rev = version;
sha256 = "1gsvp783g4jb54ccvvpyjpxjmp0pjvlq0cicygk4z4rxs0crd6kw";
};
buildInputs = [ ocaml findlib jbuilder ];
propagatedBuildInputs = [ astring decompress fmt hex logs mstruct ocaml_lwt ocamlgraph uri ];
buildPhase = "jbuilder build -p git";
inherit (jbuilder) installPhase;
meta = {
description = "Git format and protocol in pure OCaml";
license = stdenv.lib.licenses.isc;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
inherit (ocaml.meta) platforms;
};
}

36
pkgs/development/ocaml-modules/inotify/default.nix Normal file
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@ -0,0 +1,36 @@
{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild
, ocaml_lwt # optional lwt support
, doCheck ? stdenv.lib.versionAtLeast ocaml.version "4.03"
, ounit, fileutils # only for tests
}:
stdenv.mkDerivation rec {
version = "2.3";
name = "ocaml${ocaml.version}-inotify-${version}";
src = fetchFromGitHub {
owner = "whitequark";
repo = "ocaml-inotify";
rev = "v${version}";
sha256 = "1s6vmqpx19hxzsi30jvp3h7p56rqnxfhfddpcls4nz8sqca1cz5y";
};
buildInputs = [ ocaml findlib ocamlbuild ocaml_lwt ]
++ stdenv.lib.optionals doCheck [ ounit fileutils ];
configureFlags = [ "--enable-lwt"
(stdenv.lib.optionalString doCheck "--enable-tests") ];
inherit doCheck;
checkTarget = "test";
createFindlibDestdir = true;
meta = {
description = "Bindings for Linux’s filesystem monitoring interface, inotify";
license = stdenv.lib.licenses.lgpl21;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
platforms = stdenv.lib.platforms.linux;
};
}

12
pkgs/development/ocaml-modules/javalib/default.nix
View File

@ -1,16 +1,20 @@
{stdenv, fetchurl, which, ocaml, findlib, camlzip, extlib, camlp4}:
if !stdenv.lib.versionAtLeast ocaml.version "4"
then throw "javalib not supported for ocaml ${ocaml.version}"
else
let
pname = "javalib";
webpage = "http://sawja.inria.fr/";
in
stdenv.mkDerivation rec {
name = "ocaml-${pname}-${version}";
version = "2.3";
name = "ocaml${ocaml.version}-${pname}-${version}";
version = "2.3.3";
src = fetchurl {
url = "https://gforge.inria.fr/frs/download.php/33090/${pname}-${version}.tar.bz2";
sha256 = "1i8djcanzm250mwilm3jfy37cz0k0x7jbnrz8a5vvdi91kyzh52j";
url = https://gforge.inria.fr/frs/download.php/file/36307/javalib-2.3.3.tar.bz2;
sha256 = "0427n3vfb2h51gy2p4878gdwlp0mb03asn3g9kp9v4wfxmksjj11";
};
buildInputs = [ which ocaml findlib camlp4 ];

4
pkgs/development/ocaml-modules/jsonm/default.nix
View File

@ -1,13 +1,13 @@
{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, topkg, opam, uutf }:
let version = "1.0.0"; in
let version = "1.0.1"; in
stdenv.mkDerivation {
name = "ocaml${ocaml.version}-jsonm-${version}";
src = fetchurl {
url = "http://erratique.ch/software/jsonm/releases/jsonm-${version}.tbz";
sha256 = "1v3ln6d965lplj28snjdqdqablpp1kx8bw2cfx0m6i157mqyln62";
sha256 = "1176dcmxb11fnw49b7yysvkjh0kpzx4s48lmdn5psq9vshp5c29w";
};
buildInputs = [ ocaml findlib ocamlbuild topkg opam ];

1
pkgs/development/ocaml-modules/lablgl/default.nix
View File

@ -40,5 +40,6 @@ stdenv.mkDerivation rec {
description = "OpenGL bindings for ocaml";
license = licenses.gpl2;
maintainers = with maintainers; [ pSub vbgl ];
broken = stdenv.isDarwin;
};
}

4
pkgs/development/ocaml-modules/lambda-term/1.6.nix
View File

@ -1,4 +1,4 @@
{ stdenv, fetchurl, libev, ocaml, findlib, ocamlbuild, ocaml_lwt, ocaml_react, zed, camlp4 }:
{ stdenv, fetchurl, libev, ocaml, findlib, ocamlbuild, lwt, ocaml_react, zed, camlp4 }:
stdenv.mkDerivation rec {
version = "1.6";
@ -9,7 +9,7 @@ stdenv.mkDerivation rec {
sha256 = "1rhfixdgpylxznf6sa9wr31wb4pjzpfn5mxhxqpbchmpl2afwa09";
};
buildInputs = [ libev ocaml findlib ocamlbuild ocaml_lwt ocaml_react ];
buildInputs = [ libev ocaml findlib ocamlbuild lwt ocaml_react ];
propagatedBuildInputs = [ camlp4 zed ];

17
pkgs/development/ocaml-modules/lambda-term/default.nix
View File

@ -1,21 +1,24 @@
{ stdenv, buildOcaml, fetchurl, libev, ocaml, findlib, ocamlbuild, ocaml_lwt, ocaml_react, zed }:
{ stdenv, buildOcaml, fetchurl, libev, ocaml, findlib, jbuilder, opam, zed, lwt_react }:
assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01";
assert stdenv.lib.versionAtLeast ocaml.version "4.02";
buildOcaml rec {
version = "1.10";
version = "1.11";
name = "lambda-term";
src = fetchurl {
url = "https://github.com/diml/lambda-term/archive/${version}.tar.gz";
sha256 = "1kwpsqds51xmy3z3ddkam92hkl7arlzy9awhzsq62ysxcl91fb8m";
sha256 = "10lx1jqgmmfwwlv64di4a8nia9l53v7179z70n9fx6aq5l7r8nba";
};
buildInputs = [ libev ocaml findlib ocamlbuild ocaml_react ];
buildInputs = [ libev ocaml findlib jbuilder opam ];
propagatedBuildInputs = [ zed ocaml_lwt ];
propagatedBuildInputs = [ zed lwt_react ];
createFindlibDestdir = true;
installPhase = ''
${jbuilder.installPhase}
mv $out/lib/ocaml/${ocaml.version}/site-lib/{stubslibs,lambda-term}/dlllambda_term_stubs.so
'';
hasSharedObjects = true;

30
pkgs/development/ocaml-modules/lwt/default.nix
View File

@ -2,36 +2,38 @@
, ocaml_react, ocaml_ssl, libev, pkgconfig, ncurses, ocaml_oasis, glib
, ppx_tools, result, cppo
, ppxSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02"
, version ? if stdenv.lib.versionAtLeast ocaml.version "4.02" then "2.7.1" else "2.6.0"
}:
let param =
if stdenv.lib.versionAtLeast ocaml.version "4.02"
then {
version = "2.7.1";
sha256 = "0w7f59havrl2fsnvs84lm7wlqpsrldg80gy5afpnpr21zkw22g8w";
} else {
version = "2.6.0";
sha256 = "0f1h83zh60rspm4fxd96z9h5bkhq1n1q968hgq92sq4a6bfi1c2w";
};
in
let sha256 = {
"3.0.0" = "0wwhnl9hppixcsdisinj1wmffx0nv6hkpm01z9qvkngkrazi3i88";
"2.7.1" = "0w7f59havrl2fsnvs84lm7wlqpsrldg80gy5afpnpr21zkw22g8w";
"2.6.0" = "0f1h83zh60rspm4fxd96z9h5bkhq1n1q968hgq92sq4a6bfi1c2w";
}."${version}"; in
let optionals = stdenv.lib.optionals (!stdenv.lib.versionAtLeast version "3"); in
buildOcaml rec {
name = "lwt";
inherit (param) version;
inherit version;
src = fetchzip {
url = "https://github.com/ocsigen/lwt/archive/${version}.tar.gz";
inherit (param) sha256;
inherit sha256;
};
buildInputs = [ ocaml_oasis pkgconfig which cryptopp ocaml findlib ocamlbuild glib ncurses camlp4 cppo ]
++ stdenv.lib.optional ppxSupport ppx_tools;
propagatedBuildInputs = [ result ocaml_react ocaml_ssl libev ];
propagatedBuildInputs = [ result ]
++ optionals [ ocaml_react ocaml_ssl ]
++ [ libev ];
configureScript = "ocaml setup.ml -configure";
prefixKey = "--prefix ";
configureFlags = [ "--enable-glib" "--enable-ssl" "--enable-react" "--enable-camlp4" ]
configureFlags =
optionals [ "--enable-glib" "--enable-ssl" "--enable-react" ]
++ [ "--enable-camlp4" ]
++ [ (if ppxSupport then "--enable-ppx" else "--disable-ppx") ];
createFindlibDestdir = true;

21
pkgs/development/ocaml-modules/lwt_react/default.nix Normal file
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@ -0,0 +1,21 @@
{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, lwt, ocaml_react }:
stdenv.mkDerivation rec {
version = "1.0.1";
name = "ocaml${ocaml.version}-lwt_react-${version}";
src = fetchzip {
url = https://github.com/ocsigen/lwt/releases/download/3.0.0/lwt_react-1.0.1.tar.gz;
sha256 = "1bbz7brvdskf4angzn3q2s2s6qdnx7x8m8syayysh23gwv4c7v31";
};
buildInputs = [ ocaml findlib ocamlbuild ];
propagatedBuildInputs = [ lwt ocaml_react ];
createFindlibDestdir = true;
meta = {
description = "Helpers for using React with Lwt";
inherit (lwt.meta) homepage license maintainers platforms;
};
}

33
pkgs/development/ocaml-modules/mstruct/default.nix Normal file
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@ -0,0 +1,33 @@
{ stdenv, fetchFromGitHub, ocaml, findlib, jbuilder, opam
, cstruct
}:
if !stdenv.lib.versionAtLeast ocaml.version "4.02"
then throw "mstruct is not available for OCaml ${ocaml.version}"
else
stdenv.mkDerivation rec {
version = "1.3.3";
name = "ocaml${ocaml.version}-mstruct-${version}";
src = fetchFromGitHub {
owner = "mirage";
repo = "ocaml-mstruct";
rev = "v${version}";
sha256 = "1rxjzkg6156vl6yazbk1h0ndqj80wym5aliaapijf60apqqmsp4s";
};
buildInputs = [ ocaml findlib jbuilder opam ];
propagatedBuildInputs = [ cstruct ];
inherit (jbuilder) installPhase;
meta = {
description = "A thin mutable layer on top of cstruct";
license = stdenv.lib.licenses.isc;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
inherit (ocaml.meta) platforms;
};
}

26
pkgs/development/ocaml-modules/ocp-ocamlres/default.nix Normal file
View File

@ -0,0 +1,26 @@
{ stdenv, fetchFromGitHub, ocaml, findlib, pprint }:
stdenv.mkDerivation rec {
name = "ocaml${ocaml.version}-ocp-ocamlres-${version}";
version = "0.3";
src = fetchFromGitHub {
owner = "OCamlPro";
repo = "ocp-ocamlres";
rev = "v${version}";
sha256 = "0pm1g38f6pmch1x4pcc09ky587x5g7p7n9dfbbif8zkjqr603ixg";
};
buildInputs = [ ocaml findlib pprint ];
createFindlibDestdir = true;
installFlags = [ "BINDIR=$(out)/bin" ];
preInstall = "mkdir -p $out/bin";
meta = {
description = "A simple tool and library to embed files and directories inside OCaml executables";
license = stdenv.lib.licenses.lgpl3Plus;
homepage = https://www.typerex.org/ocp-ocamlres.html;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (ocaml.meta) platforms;
};
}

25
pkgs/development/ocaml-modules/ocplib-json-typed/default.nix Normal file
View File

@ -0,0 +1,25 @@
{ stdenv, fetchFromGitHub, ocaml, findlib, ocplib-endian, js_of_ocaml, uri }:
stdenv.mkDerivation rec {
name = "ocaml${ocaml.version}-ocplib-json-typed-${version}";
version = "0.5";
src = fetchFromGitHub {
owner = "OCamlPro";
repo = "ocplib-json-typed";
rev = "v${version}";
sha256 = "02c600wm2wdpzb66pivxzwjhqa2dm7dqyfvw3mbvkv1g2jj7kn2q";
};
buildInputs = [ ocaml findlib ocplib-endian js_of_ocaml ];
propagatedBuildInputs = [ uri ];
createFindlibDestdir = true;
meta = {
description = "A collection of type-aware JSON utilities for OCaml";
license = stdenv.lib.licenses.lgpl21;
maintainers = [ stdenv.lib.maintainers.vbgl ];
inherit (src.meta) homepage;
inherit (ocaml.meta) platforms;
};
}

6
pkgs/development/ocaml-modules/ocsigen-server/default.nix
View File

@ -1,5 +1,5 @@
{stdenv, fetchurl, ocaml, findlib, which, ocaml_react, ocaml_ssl,
ocaml_lwt, ocamlnet, ocaml_pcre, cryptokit, tyxml, ipaddr, zlib,
lwt, ocamlnet, ocaml_pcre, cryptokit, tyxml, ipaddr, zlib,
libev, openssl, ocaml_sqlite3, tree, uutf, makeWrapper, camlp4
, pgocaml
}:
@ -17,7 +17,7 @@ stdenv.mkDerivation {
sha256 = "1v44qv2ixd7i1qinyhlzzqiffawsdl7xhhh6ysd7lf93kh46d5sy";
};
buildInputs = [ocaml which findlib ocaml_react ocaml_ssl ocaml_lwt
buildInputs = [ocaml which findlib ocaml_react ocaml_ssl lwt
ocamlnet ocaml_pcre cryptokit tyxml ipaddr zlib libev openssl
ocaml_sqlite3 tree uutf makeWrapper camlp4 pgocaml ];
@ -31,7 +31,7 @@ stdenv.mkDerivation {
''
rm -rf $out/var/run
wrapProgram $out/bin/ocsigenserver \
--prefix CAML_LD_LIBRARY_PATH : "${mkpath ocaml_ssl "ssl"}:${mkpath ocaml_lwt "lwt"}:${mkpath ocamlnet "netsys"}:${mkpath ocamlnet "netstring"}:${mkpath ocaml_pcre "pcre"}:${mkpath cryptokit "cryptokit"}:${mkpath ocaml_sqlite3 "sqlite3"}"
--prefix CAML_LD_LIBRARY_PATH : "${mkpath ocaml_ssl "ssl"}:${mkpath lwt "lwt"}:${mkpath ocamlnet "netsys"}:${mkpath ocamlnet "netstring"}:${mkpath ocaml_pcre "pcre"}:${mkpath cryptokit "cryptokit"}:${mkpath ocaml_sqlite3 "sqlite3"}"
'';
dontPatchShebangs = true;

8
pkgs/development/ocaml-modules/sawja/default.nix
View File

@ -4,16 +4,16 @@ assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "3.12";
let
pname = "sawja";
version = "1.5";
version = "1.5.2";
webpage = "http://sawja.inria.fr/";
in
stdenv.mkDerivation rec {
name = "ocaml-${pname}-${version}";
name = "ocaml${ocaml.version}-${pname}-${version}";
src = fetchurl {
url = "https://gforge.inria.fr/frs/download.php/33091/${pname}-${version}.tar.bz2";
sha256 = "0i8qgqkw9vgj6k2g6npss268ivxdkzx5qj2a52jbd8ih59rn68cm";
url = https://gforge.inria.fr/frs/download.php/file/36093/sawja-1.5.2.tar.bz2;
sha256 = "12046arkxiy4gf1s17hyc0yzydjzpzwqxn13sbkbxl8xzvmankx4";
};
buildInputs = [ which perl ocaml findlib camlp4 ];

4
pkgs/development/qtcreator/default.nix
View File

@ -7,7 +7,7 @@ with stdenv.lib;
let
baseVersion = "4.3";
revision = "0";
revision = "1";
in
stdenv.mkDerivation rec {
@ -16,7 +16,7 @@ stdenv.mkDerivation rec {
src = fetchurl {
url = "http://download.qt-project.org/official_releases/qtcreator/${baseVersion}/${version}/qt-creator-opensource-src-${version}.tar.xz";
sha256 = "1n3ihky72p6q69n6c8s5hacq8rxdqmmr6msg89w5amwd17sam7p9";
sha256 = "1bd4wxvp8b5imsmrbnn8rkiln38g74g2545x07pmihc8z51qh2h6";
};
buildInputs = [ qtbase qtscript qtquickcontrols qtdeclarative ];

401
pkgs/development/r-modules/bioc-annotation-packages.nix
View File

@ -4,7 +4,7 @@
# Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix
{ self, derive }:
let derive2 = derive { rVersion = "3.3"; };
let derive2 = derive { rVersion = "3.4"; };
in with self; {
BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; };
BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; };
@ -46,6 +46,7 @@ in with self; {
BSgenome_Ggallus_UCSC_galGal3_masked = derive2 { name="BSgenome.Ggallus.UCSC.galGal3.masked"; version="1.3.99"; sha256="0igi02g46h1j87hv9bk45nbqahyjd0k75jkg0s6m9a62jsssg63l"; depends=[BSgenome BSgenome_Ggallus_UCSC_galGal3]; };
BSgenome_Ggallus_UCSC_galGal4 = derive2 { name="BSgenome.Ggallus.UCSC.galGal4"; version="1.4.0"; sha256="1qfl046akdf43azigprc13sssgbmxdz9dmlrvy13ag8fgfkjxign"; depends=[BSgenome]; };
BSgenome_Ggallus_UCSC_galGal4_masked = derive2 { name="BSgenome.Ggallus.UCSC.galGal4.masked"; version="1.3.99"; sha256="0fvqimjf1xvgka4nw66nd0rbyb7r93v8cyw33776lhfv68ny058v"; depends=[BSgenome BSgenome_Ggallus_UCSC_galGal4]; };
BSgenome_Ggallus_UCSC_galGal5 = derive2 { name="BSgenome.Ggallus.UCSC.galGal5"; version="1.4.2"; sha256="0gi82xr2b3fn3wi608nmqp3cgjx63rm82wy24p9l0s1qqh2z3jdb"; depends=[BSgenome]; };
BSgenome_Hsapiens_1000genomes_hs37d5 = derive2 { name="BSgenome.Hsapiens.1000genomes.hs37d5"; version="0.99.1"; sha256="1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"; depends=[BSgenome]; };
BSgenome_Hsapiens_NCBI_GRCh38 = derive2 { name="BSgenome.Hsapiens.NCBI.GRCh38"; version="1.3.1000"; sha256="0y75qdq578fh6420vbvsbwmdw8jvr3g06qli2h3vj3pxmjykh9c1"; depends=[BSgenome]; };
BSgenome_Hsapiens_UCSC_hg17 = derive2 { name="BSgenome.Hsapiens.UCSC.hg17"; version="1.3.1000"; sha256="1q8p0zp5xpp22znwnygl3jhc159db4q3kkpj5wfij5a6z19zs1w3"; depends=[BSgenome]; };
@ -74,6 +75,7 @@ in with self; {
BSgenome_Ptroglodytes_UCSC_panTro2_masked = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro2.masked"; version="1.3.99"; sha256="1dy1bf6rsmzv6qj9d2a1sz56w33pk63g3qxm8znfdw11hmdbq9m1"; depends=[BSgenome BSgenome_Ptroglodytes_UCSC_panTro2]; };
BSgenome_Ptroglodytes_UCSC_panTro3 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3"; version="1.4.0"; sha256="1vbfx0zrj4rcwcsm1q09xdiv0mmrycj8223lnxqb8nr5r017f7gm"; depends=[BSgenome]; };
BSgenome_Ptroglodytes_UCSC_panTro3_masked = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3.masked"; version="1.3.99"; sha256="18ga0whdcp5zpigrmh68wjmn99lzvfyvgxjm58y0jx66rmg94mir"; depends=[BSgenome BSgenome_Ptroglodytes_UCSC_panTro3]; };
BSgenome_Ptroglodytes_UCSC_panTro5 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro5"; version="1.4.2"; sha256="0wxciajcyf0hr6g6zcji125jm18nnspwvnv5x3jibjvxzx55gcds"; depends=[BSgenome]; };
BSgenome_Rnorvegicus_UCSC_rn4 = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn4"; version="1.4.0"; sha256="1aww2bxyqbb81iln3vgrb0659r82v9yv1z41k9r3zws8b7k7df6x"; depends=[BSgenome]; };
BSgenome_Rnorvegicus_UCSC_rn4_masked = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn4.masked"; version="1.3.99"; sha256="0jfv1873ab1nwwdr18vrjqcdl4rhv3xgqbf4jfnjk7sjx154pfi6"; depends=[BSgenome BSgenome_Rnorvegicus_UCSC_rn4]; };
BSgenome_Rnorvegicus_UCSC_rn5 = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn5"; version="1.4.0"; sha256="1s92983m73bi08ihvyd8c17yx29hz5xxrnrs2if8fda4asw1f3f0"; depends=[BSgenome]; };
@ -93,21 +95,21 @@ in with self; {
BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; };
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.0"; sha256="0h4jxcb6vkf9ijljas7yvcx6vmrd5rpjgj202cf2jb9hx8h9497i"; depends=[BiocGenerics ChemmineR RSQLite]; };
DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="0.99.12"; sha256="1yc912m6qvrqbmc9y4bxyr1l3vfq4pv751jagsqpvjlhgkdasn2p"; depends=[ensembldb GenomicFeatures]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="0.99.12"; sha256="1r09wksknhsa42aq2xdwnyd0agsw46fnxijb5nkx1avhp82zlpp2"; depends=[ensembldb GenomicFeatures]; };
EnsDb_Mmusculus_v75 = derive2 { name="EnsDb.Mmusculus.v75"; version="0.99.12"; sha256="1w3hby778gm1xcin2jyjn6f9l4h2na7lz99mqy28pl6g2b2fc74g"; depends=[ensembldb GenomicFeatures]; };
EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="0.99.12"; sha256="0zhjh0l26rsimg2qz9a7qgxcb7h4mrgp28wawh7993mym6apwbvq"; depends=[ensembldb GenomicFeatures]; };
EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="0.99.12"; sha256="11g24pbal3frfkfndcs80kmbp9igkf7l8hqfbz1ggdxyshgaf6z0"; depends=[ensembldb GenomicFeatures]; };
EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="0.99.12"; sha256="1s0mbrd3v104rxvnjrm7rq21ypy5vcjgbhnadwkj679spz84jnib"; depends=[ensembldb GenomicFeatures]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.1.0"; sha256="020vrkfjs7bwnz897l3x4fmc1bnzn3n1zpmv5mmnn8fm35qcrai8"; depends=[ensembldb]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.1.0"; sha256="1684sl2smmp2bdkfzv9v5f04100p4hqkfhn1m73pyppygkpak2hp"; depends=[ensembldb]; };
EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.1.0"; sha256="1xbvzl8abgcafzd3f8kaypq5b6lpa8j92m2skgsagn0mfpqwqk4s"; depends=[ensembldb]; };
EnsDb_Mmusculus_v75 = derive2 { name="EnsDb.Mmusculus.v75"; version="2.1.0"; sha256="0r6j0andx2mbrjk7wfhr4k8cwpll63i08m0073fik0cy08hy0f6l"; depends=[ensembldb]; };
EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.1.0"; sha256="12shvxcj8jjzn5mil6vfil4a9jnrfs41jlll4wypgs4iyb0m8f7g"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.1.0"; sha256="1bdr417m0dk2qdkz4ydfzhl3q728c9vl8k5w84x4g8cqv0bv58lv"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.1.0"; sha256="1nri32xkz764nnpxfh8hbp6c8f8xd565jl5hwhvn6ml2awjqxd83"; depends=[ensembldb]; };
FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; };
FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; };
FDb_UCSC_snp135common_hg19 = derive2 { name="FDb.UCSC.snp135common.hg19"; version="1.0.0"; sha256="1ykyixrbw86ajx65w1jwr068ma5cvzl4kypaw77kpggmf1qqgkxp"; depends=[AnnotationDbi GenomicFeatures]; };
FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; };
FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="0.99.1"; sha256="0sfnrcg5f99d65grlc7ds9i03yrgn8c0p87sp7cqnmr6f2h3y7i4"; depends=[minfi]; };
GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; };
GO_db = derive2 { name="GO.db"; version="3.3.0"; sha256="0x2hkbhg9d8waw32hdn05887vv3zbs5aqff3mf5vfyzvl7xhgxy0"; depends=[AnnotationDbi]; };
GO_db = derive2 { name="GO.db"; version="3.4.0"; sha256="02cj8kqi5w39jwcs8gp1dgj08sah262ppxnkz4h3qd0w191y8yyl"; depends=[AnnotationDbi]; };
Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; };
Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; };
HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; };
@ -117,113 +119,112 @@ in with self; {
HuExExonProbesetLocationHg19 = derive2 { name="HuExExonProbesetLocationHg19"; version="0.0.3"; sha256="0h240v2wc2c935bxws6xpha4c0hw89bm821w1c1digwhd04kbyxh"; depends=[AnnotationDbi]; };
HuO22_db = derive2 { name="HuO22.db"; version="3.2.3"; sha256="159ml83s9r8kcb0phh2zalcmzacn6d5z7vq6bg5ygy9l85vkcqsf"; depends=[AnnotationDbi org_Hs_eg_db]; };
IlluminaHumanMethylation27k_db = derive2 { name="IlluminaHumanMethylation27k.db"; version="1.4.8"; sha256="0zw0n4a9v42ifmvw2hfzzvl8jz1d7f00ia59ljhcvvw9aj12q4zs"; depends=[AnnotationDbi org_Hs_eg_db]; };
IlluminaHumanMethylation27kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation27kanno.ilmn12.hg19"; version="0.6.0"; sha256="0idy6xn3x5c640d47q52na03s29pj4l38dpxy8q9mh6hy8g29vp3"; depends=[minfi]; };
IlluminaHumanMethylation27kmanifest = derive2 { name="IlluminaHumanMethylation27kmanifest"; version="0.4.0"; sha256="1kvz6z7g61zdrc1i93wsk1zv5mwcswfkxkl114644q09djwbz1fx"; depends=[minfi]; };
IlluminaHumanMethylation450k_db = derive2 { name="IlluminaHumanMethylation450k.db"; version="2.0.9"; sha256="1zmm65qnm95w9c8z30c9vncca451npbhhnlkpkpp894svsakxziz"; depends=[AnnotationDbi org_Hs_eg_db]; };
IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.2.1"; sha256="1agvivsji3ppd9qwmf99kzyg5jrz1wnz3f0w07715xywc6pavvxl"; depends=[minfi]; };
IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.6.0"; sha256="059vlxsx3p3fcnywwirahsc6mlk813zpqnbv0jsrag6x5bb8z6r4"; depends=[minfi]; };
IlluminaHumanMethylation450kmanifest = derive2 { name="IlluminaHumanMethylation450kmanifest"; version="0.4.0"; sha256="0qx75xwifrbkqmbkd8dhf44c34ibmbivqh7y8rvgrsizmi5ybcj1"; depends=[minfi]; };
IlluminaHumanMethylation450kprobe = derive2 { name="IlluminaHumanMethylation450kprobe"; version="2.0.6"; sha256="1iah0rw7d8qvgwvn6n2l4cln39ky010gqpd9shml45m48m6whiia"; depends=[AnnotationDbi]; };
IlluminaHumanMethylationEPICanno_ilm10b2_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b2.hg19"; version="0.3.0"; sha256="1nz15bva44pag3c4l1z7d01r0jfgb9cirn3zard5i258v1ahg4q6"; depends=[minfi]; };
IlluminaHumanMethylationEPICanno_ilm10b2_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b2.hg19"; version="0.6.0"; sha256="0sfdx0lpiw3l4passx93pjfswd0iv3hxdc7ciazh53baib3xpv2d"; depends=[minfi]; };
IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; };
JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; };
KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; };
LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; };
LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; };
LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; };
MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.3.0"; sha256="0axbmmcqsy8hbxxn0q3q14whdjy8zvmd0xbqdlcb08nhs8j1jji0"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.3.0"; sha256="1g1hi6fvz87im8xafk2jmkms463i2jakjjq8xdmb4zhk1ij6ck2f"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_ALL_wgs_phase1_release_v3_20101123 = derive2 { name="MafDb.ALL.wgs.phase1.release.v3.20101123"; version="3.3.0"; sha256="1aj9w8kaymm9jmjani1nyw75akxprvm77rjddmrlkfdpfj4mnadn"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_ALL_wgs_phase3_release_v5b_20130502 = derive2 { name="MafDb.ALL.wgs.phase3.release.v5b.20130502"; version="3.3.0"; sha256="0rjsj5423nksnk3dn8zyxa7j62ihni1ni9m7hr0fqcm4jixqbjmp"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137 = derive2 { name="MafDb.ESP6500SI.V2.SSA137"; version="3.3.0"; sha256="1yicrqh40pjgg4g7dm7xf26dz3hwp01n25k3m46ds7dyg20g6vln"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_ExAC_r0_3_1_nonTCGA_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5"; version="3.3.0"; sha256="01l4ixcgpwi8prj91xag2r93dayprg6zi2w2pp0bhsw3cs8v9cfi"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ExAC_r0_3_1_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.snvs.hs37d5"; version="3.3.0"; sha256="0csnsa6s08yc1mgi32h7pbmdn4h9wja96l2zdfvfwapmh3wmzm1a"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ExAC_r0_3_sites = derive2 { name="MafDb.ExAC.r0.3.sites"; version="3.3.0"; sha256="07a859ipwbk1il6fvb7mlpvc05r7gkglchx2qlc3xlpl8i9fb9qr"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite SummarizedExperiment VariantAnnotation VariantFiltering]; };
MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.6.0"; sha256="0zia94rqj9kjf9cibppkhdb7qx086hkx6hd3dcn85x27di4ic12g"; depends=[MeSHDbi]; };
MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.6.0"; sha256="1lq2a7l855xb482x97p4mwvgzbizjb6m0avswhm9snvipbkfb42q"; depends=[MeSHDbi]; };
MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.6.0"; sha256="19nv4mpx15qgiixcvwlbq8v5plzpkzkikgpc5mp9mzf286nnh7vz"; depends=[MeSHDbi]; };
MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.6.0"; sha256="05xfrgyvyljh9jh38f8fj4x2l0i7h55yn08gd0r4riiibsgrfwvz"; depends=[MeSHDbi]; };
MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.6.0"; sha256="1fnz04qz5f8v20sr0zp9wd2dbqapww0lfb1c8lv099m5sanmwz35"; depends=[MeSHDbi]; };
MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.6.0"; sha256="0jbsz97wrbj70pypj9xgvhwy4cgjapirnhsdiix6b1l0lpqahvzq"; depends=[MeSHDbi]; };
MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.6.0"; sha256="13gdrcn4xmndly7ag15b7qnwl86aclqgi63fn682y12hdbd0r4d9"; depends=[MeSHDbi]; };
MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.6.0"; sha256="1k7faw7vspx5fg5qqnlq29r7i5b01fv2zhin2b3r497g25pg2yqf"; depends=[MeSHDbi]; };
MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.6.0"; sha256="1fs858m8hsipawrjm75nqsrcmkka5ynqxk0cw2vr8g7q9a3ash9s"; depends=[MeSHDbi]; };
MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.6.0"; sha256="1pwg5p82jsqmjl0rf3vv6nk9f4k2l5smn2ksx4d1q8dbnrl6dxdi"; depends=[MeSHDbi]; };
MeSH_Bsu_TUB10_eg_db = derive2 { name="MeSH.Bsu.TUB10.eg.db"; version="1.6.0"; sha256="1s3i1g5smbcal6sfdraqaybi6cmw3aagjr90dbgbw0dzf1i3vjf5"; depends=[MeSHDbi]; };
MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.6.0"; sha256="198l8ksvfnzz8cdzx0k6297zvms7m4a6v54c1j96p1brqyx3asc7"; depends=[MeSHDbi]; };
MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.6.0"; sha256="1lcsfax1w6jpyj6k33l4l4iw7n87gm88pljamn584622i7xgz65q"; depends=[MeSHDbi]; };
MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.6.0"; sha256="1m1wf195nipvy4ha3amdl1l8shya7308s087ixy8sgklzdfnrka7"; depends=[MeSHDbi]; };
MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.6.0"; sha256="1192anip5ib95cai84q0lxcj4q9j05m7p91zxnyqgwy8hda13fc4"; depends=[MeSHDbi]; };
MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.6.0"; sha256="1qis2wxmilv2yy6gi5318md57ybcl1jwd1ap2y6qpa8aa92jdmpn"; depends=[MeSHDbi]; };
MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.6.0"; sha256="1gs2dvrpdkis46m72sw7rxj5x3wsbyvxyn81npw6af4zvsp1150n"; depends=[MeSHDbi]; };
MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.6.0"; sha256="13zsdh0x572p06drb6jhmmr2flcsmdwndhpb844rwc9ycw5fxka5"; depends=[MeSHDbi]; };
MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.6.0"; sha256="0321fb35vmajhpp5fj8g0ha28psbbbk81076zvpx84kf4pbmy4z7"; depends=[MeSHDbi]; };
MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.6.0"; sha256="1k225nkxnlkrcjg44xb7f7f9h52hjy6b54zfmphkp8r06hqmmynz"; depends=[MeSHDbi]; };
MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.6.0"; sha256="0z67vcgk9mbjfab5hwd8n2dga02v01b62h51wbajanf5zv8yclb3"; depends=[MeSHDbi]; };
MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.6.0"; sha256="1xncfml5h36g5ldgvmrvdq1w3mb9b2d3zsw4935ybydw0239pm8f"; depends=[MeSHDbi]; };
MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.6.0"; sha256="0alw1az6iwk7xlbji5ibd22kp2hkj4s7cgssvkp7m880bbimfw49"; depends=[MeSHDbi]; };
MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.6.0"; sha256="02dhsprjfg1lb5kiwmflxsd6sdapkp5j9d42c59mgq5i8wp5fgxb"; depends=[MeSHDbi]; };
MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.6.0"; sha256="036n8rkn51fg1a5n4drx9gxqc6px895f7iqblbkjfyxxg4ljgxvq"; depends=[MeSHDbi]; };
MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.6.0"; sha256="14v6nm8ky41aq9vih24nyb2yvzx4g14zazc6f2g7ik8g027nvwdl"; depends=[MeSHDbi]; };
MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.6.0"; sha256="0zr4i89rk4jz20yrh8ag8mb5kdhcf4psb1pplr62idj1h38yn645"; depends=[MeSHDbi]; };
MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.6.0"; sha256="0yigpsc3j8d0fp390qyxlfm0lgqbbz0q0661nkpchqajfdd1hy7k"; depends=[MeSHDbi]; };
MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.6.0"; sha256="1rgc176cgd1ciwkiwma6q8vj53fa1an2k7ivqsxiwx8dpiznwp3z"; depends=[MeSHDbi]; };
MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.6.0"; sha256="12hznsnlpbgmwabli009vr57cqnk5w35r31zsvjfcs0qkmk87dq7"; depends=[MeSHDbi]; };
MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.6.0"; sha256="0khbqcxj2hvmiknb1ycryv91i2iw028lhhzfwma18spwmqybn8s0"; depends=[MeSHDbi]; };
MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.6.0"; sha256="0v5pkbzjyrvx8say1nx0aqak8hqpwl4g9hr57nnvbmj6akjqfg5f"; depends=[MeSHDbi]; };
MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.6.0"; sha256="0dfm8cdl5s83iia8jn4830vxc7lh9l8yf25pd4851zwdz4m34gj7"; depends=[MeSHDbi]; };
MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.4.0"; sha256="1r9q1vk8p9ah28k6gc2dlglwyi1i0y5zaxmzcrkxyw04pfzn41f7"; depends=[MeSHDbi]; };
MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.4.0"; sha256="180z52y03gdkf36ycr76vcs1mz9qdbwywzxrbcj6yb5vcj8i5hdx"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137 = derive2 { name="MafDb.ESP6500SI.V2.SSA137"; version="3.4.0"; sha256="1s5vqp3fnkswiv2slsh0wkd286psdhqcwvchcjq3gm4hq86h4pwh"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.4.0"; sha256="1qaqqkshvrf7y6lwnnh8n47zvb35vn23l8vmvm29przz8y2xz22v"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.4.0"; sha256="0gxj4nghd99r6ivgzvs86gl8j1frr8laira4gld0vmfp0a4iv5fy"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ExAC_r0_3_1_nonTCGA_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5"; version="3.4.0"; sha256="060750f8zz3gasgnq6smzq7f68nd9jh12wb8gpivc3xklx7gcrk9"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ExAC_r0_3_1_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.snvs.hs37d5"; version="3.4.0"; sha256="0kq7c2zqzm0g4mbdzqgxq5bklsr2n0cm8x97gn3cfbf61y96ngqw"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.7.0"; sha256="16h0yvjmrp8x5a0gqzpd9zc2f7q89pr1jsqqwxa44i8hqrgan0zp"; depends=[MeSHDbi]; };
MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.7.0"; sha256="04wqdv5z7r2lv49711k0z6vs408yyp96vnsmvyjh15m2bx3bbp3s"; depends=[MeSHDbi]; };
MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.7.0"; sha256="1k7kx59k9q6hd2svxi233bgq06h3wd6ahcm5lyy2i0br5crysbir"; depends=[MeSHDbi]; };
MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.7.0"; sha256="08wi41vxxb5ssbgz019dq5n4li0vfnv737iaavmy07hymh6js9v8"; depends=[MeSHDbi]; };
MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.7.0"; sha256="0l0a60mv7s08aflgra3ynkpr455953fr6lxv67xwkjag8k14gsi1"; depends=[MeSHDbi]; };
MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.7.0"; sha256="0ix24hj6g3n44g5g4f22dv84q3w6k588san83048x7w946774jf5"; depends=[MeSHDbi]; };
MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.7.0"; sha256="1dagpmrwmsgb8hylc69wic3qfl0cfs0qp9ib32w6qv9y71zg4i1c"; depends=[MeSHDbi]; };
MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.7.0"; sha256="02dhvpzacq6v785q4r5r5d6sm0wzqrgm1k7ajn7h3y8v3gjyymap"; depends=[MeSHDbi]; };
MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.7.0"; sha256="1sv8g45lay1fijlnryza8nz3hf1r2lvcclf3kd1x6iw6fi0yn4q2"; depends=[MeSHDbi]; };
MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.7.0"; sha256="16xkz7cbg64rcgv82baxvxnyy5gg16l9cl97xdlk4wvzkyp944hy"; depends=[MeSHDbi]; };
MeSH_Bsu_TUB10_eg_db = derive2 { name="MeSH.Bsu.TUB10.eg.db"; version="1.7.0"; sha256="1d7i7q78fdnr73a0qdpcwb28jk5gj77af4vyz708gw1803l35gb1"; depends=[MeSHDbi]; };
MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.7.0"; sha256="0lbq02vslnv1gj01ill14hf15mncqbwx7p872c8whvdkziwrvki8"; depends=[MeSHDbi]; };
MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.7.0"; sha256="12nfjk5qndfrg4p11nfy392nzsrgd196qrxiqx36vffbindpmykd"; depends=[MeSHDbi]; };
MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.7.0"; sha256="128hslq3vs4psp64vi6vj84za2kbh0jwlc20j2ivnjkrr30fsb2h"; depends=[MeSHDbi]; };
MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.7.0"; sha256="1x5l0p0iiwqg7ci7nirwcsarg33b43clrbvr2cf20rxhc1valmpz"; depends=[MeSHDbi]; };
MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.7.0"; sha256="1y87i8x6ismji8y6i6yibz5zacf4486dkzmmxggy6ly80lisklb2"; depends=[MeSHDbi]; };
MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.7.0"; sha256="05mn2a7fb3zcfzqwl60zp946xyp0kdr5ld7nxh79yxwglhb2r6v0"; depends=[MeSHDbi]; };
MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.7.0"; sha256="0hii578hva5aa388zkiarm07w437ccci3qpskd8nl0qyj1xmpb72"; depends=[MeSHDbi]; };
MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.7.0"; sha256="1nm83ydgfzb43agra99sp10a513fn69yzxg430f0qdwaw564c85y"; depends=[MeSHDbi]; };
MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.7.0"; sha256="1gnvf3qm17xa1q0szb4gqnslws6g026x79hmjg7fnkcyn6faxgy9"; depends=[MeSHDbi]; };
MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.7.0"; sha256="0qnj09hpnmpxwj448wl4vdpzzmdm1w9m4gq3r2pak30fp5l2mv9i"; depends=[MeSHDbi]; };
MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.7.0"; sha256="14z8gbnj6jjh2v76qqpikylaz781gfag6r199hkq20pfph10hld7"; depends=[MeSHDbi]; };
MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.7.0"; sha256="0114vi0k57nv6pxq74c4h38b4yavs74vzidm8gg0pws2pxk8grah"; depends=[MeSHDbi]; };
MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.7.0"; sha256="0ia2xp2bl6bb497gscqbxyd9kd33bynhyg5avvyfddkhpnljv5dx"; depends=[MeSHDbi]; };
MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.7.0"; sha256="0rgjng9g69kwhh01kww5mahwbikiyc8qgzh363j2m7piqmsc5siy"; depends=[MeSHDbi]; };
MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.7.0"; sha256="0m4n7wfxxgw5i9zpcss25x1n47bpshvca03cigfmxaqvh3lagf2n"; depends=[MeSHDbi]; };
MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.7.0"; sha256="1hchnrhgvk18cs8hzg7dvf2fqrpk7fqgarkp23h325clrrh243l0"; depends=[MeSHDbi]; };
MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.7.0"; sha256="19bpjyxja7clnyvhcwfv939z1xplxj5naz4vpchs555arzx0c2m4"; depends=[MeSHDbi]; };
MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.7.0"; sha256="1njf3r6dfcvs2734mdsb3zlpkqgip9nnmmaxfz7wy3fqhn2ddyqa"; depends=[MeSHDbi]; };
MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.7.0"; sha256="0i66f7g4zfz44gnrqgl7mw0k7kadj6pmsqkk62ik2af783y9cv0r"; depends=[MeSHDbi]; };
MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.7.0"; sha256="10ndr1g76d955gii8m91l5nfvxxim3k7b5fk9r7d8fnzwagjnpij"; depends=[MeSHDbi]; };
MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.7.0"; sha256="1nwig8czz65cfrq1mw62h85wh9wch69b5i12iry85x1567q7sfbv"; depends=[MeSHDbi]; };
MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.7.0"; sha256="1f93fnclsp6zmza6blwkfj5ncmxs8ihjqxr9dh8xjqciyb7wfmw5"; depends=[MeSHDbi]; };
MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.7.0"; sha256="0328rxhmhhmspylzx7sdmk3mlbx9hndmpfc3fkrdr2n9a8zirlwp"; depends=[MeSHDbi]; };
MeSH_Eco_CFT073_eg_db = derive2 { name="MeSH.Eco.CFT073.eg.db"; version="1.4.0"; sha256="0r7hlxd5k9n9shq3wj5ldqj00apvx4bv8h38v2i4adv29s5x7973"; depends=[MeSHDbi]; };
MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.6.0"; sha256="0wgc2c0ihn3qg2sbh3xs2x54igsf4w1pl71c9vcpx65n71xnzwwg"; depends=[MeSHDbi]; };
MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.7.0"; sha256="0x6sn0zhqm5gcd9is5ka5hg24kvlyk3qc4pnyjmc88cgfz90cqqq"; depends=[MeSHDbi]; };
MeSH_Eco_HS_eg_db = derive2 { name="MeSH.Eco.HS.eg.db"; version="1.4.0"; sha256="0gyrfjyp3k5jbcg92qzz4fjpmk9m4i0v7q2yvja73sni6976g9ca"; depends=[MeSHDbi]; };
MeSH_Eco_IAI1_eg_db = derive2 { name="MeSH.Eco.IAI1.eg.db"; version="1.4.0"; sha256="16mxh182ij25qgfk14dzzpvaac7fqcnzx58j5m6hfrz3wvgh9jrq"; depends=[MeSHDbi]; };
MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.6.0"; sha256="18m2grrbjp73ymb25iv3krb495b7y0rqy7bgq3ramig119hxcmqp"; depends=[MeSHDbi]; };
MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.7.0"; sha256="1ahln8fad45mvrg6scdaz1ilvj9wnb5mxww9jvzm33d1ik04j5sj"; depends=[MeSHDbi]; };
MeSH_Eco_K12_DH10B_eg_db = derive2 { name="MeSH.Eco.K12.DH10B.eg.db"; version="1.4.0"; sha256="00y5qlqrsjl941iaqln4m5jvskc2a6kildys881ml92f14cmgs07"; depends=[MeSHDbi]; };
MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.6.0"; sha256="1778f3bcll6zd4jing0nm8iydsyhbx68d78wh1dj68x9gky1rwd2"; depends=[MeSHDbi]; };
MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.7.0"; sha256="0vdb038i7pj7bcnnn3rf22bj3knnx4vj1dpwijivh6w9gxfkqd4p"; depends=[MeSHDbi]; };
MeSH_Eco_O127_H6_E2348_69_eg_db = derive2 { name="MeSH.Eco.O127.H6.E2348.69.eg.db"; version="1.4.0"; sha256="1as23bz0yylgf24sy84xm46bblvkacp84kjr2g8c9if1vll2x2dg"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_EDL933_eg_db = derive2 { name="MeSH.Eco.O157.H7.EDL933.eg.db"; version="1.4.0"; sha256="0qnnp2a2v3nv1br1lg2km0p96q1knwa1fx95cg4wp38nc5g0jcc9"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.6.0"; sha256="01lbrqjdyf8awzhypqmm5wja1ql08i4f8a6c9w5h9g4sziq24ck5"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.7.0"; sha256="02j5gi0199z9g6ghc4rsq7h9b5sigrq1a06hhl7rdm4bpa2sy8p1"; depends=[MeSHDbi]; };
MeSH_Eco_S88_eg_db = derive2 { name="MeSH.Eco.S88.eg.db"; version="1.4.0"; sha256="15k44ricv7vi7sbw5s2nckm6jwbfzrrjp8ck06ydjp9q70hfzmhy"; depends=[MeSHDbi]; };
MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.6.0"; sha256="0j9jrfi1fin7siaqn3q06s1aqh84f2x15sr5vkd28wzxxiv12c58"; depends=[MeSHDbi]; };
MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.6.0"; sha256="1ka55k5g7h8rzy6qab4q06k5h1mn5ryhhp28hvbb393yhslavgya"; depends=[MeSHDbi]; };
MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.6.0"; sha256="12fwr628gn4mmp876j9lli637p1452hwqm8sa383jyf3hvj5a0c2"; depends=[MeSHDbi]; };
MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.6.0"; sha256="1yznkpsdl9y560sh66q36ks5h1k0qzkc6crgrwfalpq6g4ik353w"; depends=[MeSHDbi]; };
MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.6.0"; sha256="0nxk5s2gqa2gswhzmg8isxsraf06plcwhwj8k6s1hvr2lhiq4dmd"; depends=[MeSHDbi]; };
MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.6.0"; sha256="1dqn7arsrrmwxznkal10cpzz2409i28b0n2jivkxnyfbkhvfpxrn"; depends=[MeSHDbi]; };
MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.6.0"; sha256="1xn14fwbs2g60b5v6jagq0yjlywziv9ds7djz9pjaagsxpk9clip"; depends=[MeSHDbi]; };
MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.6.0"; sha256="033q5j9q6nrkb8fingqhccg1qmka1j518pppz7lhgbjzskvlqkmj"; depends=[MeSHDbi]; };
MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.6.0"; sha256="18qypw8l98gk71lxkffvip00qqn1kdhr4k3bgmv9r9j3k00imdf2"; depends=[MeSHDbi]; };
MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.6.0"; sha256="02wx25mh7967ymqkapj4k4qh0f0xfxqkklmz8xyn1pkvk0mr1zr5"; depends=[MeSHDbi]; };
MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.6.0"; sha256="0w9m7pbayp967pcx34f7a1snk72ww093w445gf5maagifzlffwak"; depends=[MeSHDbi]; };
MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.6.0"; sha256="1s8vmdqnydla1psnbz0n1rrm9w987jy8j04a4av2cr4q5lciv551"; depends=[MeSHDbi]; };
MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.6.0"; sha256="1wn365f0j5x19mwzycgkr3r5c73vmm509622p5jrmx83ndx2gk94"; depends=[MeSHDbi]; };
MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.6.0"; sha256="1yinkkinzn9jhxmr1ri0cgcvlb08pvdrgz2fqnafxk55rihh5kg5"; depends=[MeSHDbi]; };
MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.6.0"; sha256="1jni4l7ha3asjpg9nvwh17kmbfgkg2gvmp79wjdd7b3mpw1lrm1z"; depends=[MeSHDbi]; };
MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.6.0"; sha256="1q46w0v4vni4b1qfx291xs0v5p7rgjsj5pwpfkrvkviy780c5nb9"; depends=[MeSHDbi]; };
MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.6.0"; sha256="1d8j6sbx4n98yg3fygznrcczwimga96w7ibm1rw4jwg4nxsscizn"; depends=[MeSHDbi]; };
MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.6.0"; sha256="1ycg7mh4pa7rb734x1swrfv8r0mxx6gxrlf5dnbwh0imdcxy1b5y"; depends=[MeSHDbi]; };
MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.6.0"; sha256="0qvqs3vwbwc0bah348bmmhglvqmj9q7y7kk6zkrwc4337nfrbd2i"; depends=[MeSHDbi]; };
MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.6.0"; sha256="0v84n2i71vdf71wj9yk7h89h1hvb5s0ixcdrzyhsi6a041bwq17m"; depends=[MeSHDbi]; };
MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.6.0"; sha256="0wrngzyncgsrnl1ai98vaqzs2rmx3sk6ic9xdxkfkf8xb8hgdzjy"; depends=[MeSHDbi]; };
MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.6.0"; sha256="0gvm30z9k7xnb98m3s3wk2f47kvb6h8318cjjhmbpniilfz0cl7g"; depends=[MeSHDbi]; };
MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.6.0"; sha256="137267ibpcr159br33mqrvbnbr98rxc54l2wfl0hhfrgv1k25ccp"; depends=[MeSHDbi]; };
MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.6.0"; sha256="01ghjn7fjhiy5pg27wl10kqcdlx5qnggzflrhs4kiyz5k8wa997h"; depends=[MeSHDbi]; };
MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.6.0"; sha256="08hi6csc8lnfryg6jsjv8z1qz9md6ss6vd0f2szhanrq3j198f0z"; depends=[MeSHDbi]; };
MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.6.0"; sha256="0wyrzfj5v1fgr7c61pdg0s3bpna24x50dzzvxv3bls0qzpn096hl"; depends=[MeSHDbi]; };
MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.7.0"; sha256="0nv4w38w9s53jqv3zin3m61skl2gr27iizhqvrp961wy5kqyqwmj"; depends=[MeSHDbi]; };
MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.7.0"; sha256="1kdv46yjw9dw1ksw1f59gn51gl1vkp8xgk1bwl7fjk9ap7pgc924"; depends=[MeSHDbi]; };
MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.7.0"; sha256="07ng6pri1666sv9hznxx8whk8wkj8mm969w3dlgi633fp9qsg507"; depends=[MeSHDbi]; };
MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.7.0"; sha256="0sb4nab0fibbhms8h8izwxzdwdg450klnlnczksjka5rccl8na7l"; depends=[MeSHDbi]; };
MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.7.0"; sha256="02mchzw2jc615g7xd9gb42vsjjyfpz8i6p36mrd0y4nr7mskxmr0"; depends=[MeSHDbi]; };
MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.7.0"; sha256="10sl8qisbf8m49j2fvwbwhhp2w964gfnm8j273sy6ma1rdcj1df0"; depends=[MeSHDbi]; };
MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.7.0"; sha256="195g835jsswc9v1c0ycp4s1rgcfnwbramgk9vfrlwwiqis7yw358"; depends=[MeSHDbi]; };
MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.7.0"; sha256="162rg0y1x1nr61vdzdv51ps4ilvybw6z2899xcchbvvpdgd2cxbz"; depends=[MeSHDbi]; };
MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.7.0"; sha256="1mj2p780nf8wnid2c2gkjrsbhrm8jyng03wa0wy83hs0gi38zp8k"; depends=[MeSHDbi]; };
MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.7.0"; sha256="076wrm9g3ppijpsq7ggcl3ld9nrm0vh87g5wspc760fjd0xy2pgn"; depends=[MeSHDbi]; };
MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.7.0"; sha256="0nzm1rl1qf2impsjns3cbp45kl4ld1a8icb3ip85r2hg2js85ifa"; depends=[MeSHDbi]; };
MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.7.0"; sha256="0v30ia3wdicx38a4qaqafz5xblvdhpwzlxxdxka941v364dqvjvi"; depends=[MeSHDbi]; };
MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.7.0"; sha256="0j7l3w697jbf8wx2shnvs5hirpck0cwa7ik298gsjm9d5hwmjkwa"; depends=[MeSHDbi]; };
MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.7.0"; sha256="0nssphb6qs81i0hay1lmyvvvsj055rxwr21p46x4zlrqy01m9qxq"; depends=[MeSHDbi]; };
MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.7.0"; sha256="0pn9hhs4h9i49kw64xc4rb25gfvrn72swncvhw33pbw5kdav3mmi"; depends=[MeSHDbi]; };
MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.7.0"; sha256="1mw04y6vdma7q8i456qbjga4ikswsrbg4r7l9k9dyq37rh53fqhj"; depends=[MeSHDbi]; };
MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.7.0"; sha256="16b5wgr5wfhrv64za39k9kkqg1drscvnf1s98jw7inrlk3hc7cx3"; depends=[MeSHDbi]; };
MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.7.0"; sha256="0g2czpb0d47yrq161fzvkmra5gmv7vqjllrhxd6v8vc65kmjkcjb"; depends=[MeSHDbi]; };
MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.7.0"; sha256="15k2ymcn65hwjmp47azf7wn7b8d1mb8g6b9wxrpv2jw7cazr14j2"; depends=[MeSHDbi]; };
MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.7.0"; sha256="04yw89mswnpi52hz1fa4y0ds5lykhwbwlgf52fyjhcbjw43ldais"; depends=[MeSHDbi]; };
MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.7.0"; sha256="09g0cgcbgyj59irvifqzbym9pyij3g4sqk95njd6xnlq57rw1awi"; depends=[MeSHDbi]; };
MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.7.0"; sha256="09yrm1skqvbs6jfn5a6s2ky7ij2b5nvs0p3vbjcv3pfh60n0zxdl"; depends=[MeSHDbi]; };
MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.7.0"; sha256="0h4g20ndpbrasaxml6in3wff6ckl5dy3h7wli9zamvrljzh0qdza"; depends=[MeSHDbi]; };
MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.7.0"; sha256="1ny0pqj05rz005fhi3nawixk0rj0jdnyd737359vbph79s82h4n5"; depends=[MeSHDbi]; };
MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.7.0"; sha256="0p62h8i0fx5vxac0xk54laibgsgmnpavpi5d6brjrddvxa4yqvx7"; depends=[MeSHDbi]; };
MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.7.0"; sha256="10f6kxzdgpidig3jc8wfgkan5yx1c8brxnf6w2y62ba3nq5nhj1j"; depends=[MeSHDbi]; };
MeSH_Sau_USA300TCH1516_eg_db = derive2 { name="MeSH.Sau.USA300TCH1516.eg.db"; version="1.4.0"; sha256="109kvsdqvra8x392l82djbd46l8z4hv4z92785ivgdcnchsdjq7p"; depends=[MeSHDbi]; };
MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.6.0"; sha256="1yxhywyzzak1h13vb7dqnqn016l8zjafq2y5dg7gyja1njwln4sr"; depends=[MeSHDbi]; };
MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.6.0"; sha256="137zvl1628jxrrn5n2pv4p9j00nrrqp3bxibxspx760hwrf72qah"; depends=[MeSHDbi]; };
MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.6.0"; sha256="0w5r34mkmfllrgqcvnv51yi9d9qpy88w2xnff388qf101n3pr8zd"; depends=[MeSHDbi]; };
MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.6.0"; sha256="1kqnms8zq7mspk1bp0in7c6rns0zp08jaji5a0dlryng6awirm2m"; depends=[MeSHDbi]; };
MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.6.0"; sha256="0s4dw4hkgw9qkbcwp1pd7kvkjpbsiwnzmbp3x9448ljphi5x3fya"; depends=[MeSHDbi]; };
MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.6.0"; sha256="1bb8cpb28amrxjdlq24vszg7nzp64crhsvckl9dgsw48mf4ijvlr"; depends=[MeSHDbi]; };
MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.6.0"; sha256="0g09xgh4kzrqbaq1aif93bbbazkxggf36jsr4w2m5l7pdmbr9307"; depends=[MeSHDbi]; };
MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.6.0"; sha256="11zcyybrwappblsbwylzmjvavmvr4p80q9308mgdc5wix9zzj1fy"; depends=[MeSHDbi]; };
MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.6.0"; sha256="022c14njscb5d5146z3y85m2x5jxhq2lanj0nvba5jl0apzjxbb3"; depends=[MeSHDbi]; };
MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.6.0"; sha256="123zq61pnb1fgm5w81ahdymb3fmyb3bassxqh3bzf592q5457sm0"; depends=[MeSHDbi]; };
MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.6.0"; sha256="068qigbld4s7jj8001d21vi2k0ddqw74csn8xqhm245h31w8sr1v"; depends=[MeSHDbi]; };
MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.6.0"; sha256="0is3w4snymmc8207lbwi8b1qi6kwm2v50k9aqd4x51acs292kyim"; depends=[MeSHDbi]; };
MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.6.0"; sha256="0qdpw4s0brlmp6dvxdngzmflhvvz85x56mr1z72v3wf4991l41r8"; depends=[MeSHDbi]; };
MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.6.0"; sha256="1al8lr6p7g0wpcjjkwl3sxwkgykc06mgmgm54y5bvrgdbqxydz1q"; depends=[MeSHDbi]; };
MeSH_db = derive2 { name="MeSH.db"; version="1.6.0"; sha256="0k366gpxn6kv9b8by516dqib3d5aclzf8475ci8vqrryaxh3ibsm"; depends=[MeSHDbi]; };
MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.7.0"; sha256="09df9issnh9adhwb5z6rxzll8d8gqpvg812p0xny7zx598hvjbyh"; depends=[MeSHDbi]; };
MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.7.0"; sha256="047v0h1jrxacw33hd2iclrwzi441s60aq107ynzh549066r44l26"; depends=[MeSHDbi]; };
MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.7.0"; sha256="19a6sq9yzc7q7515x7wxjdr74r3xxagfinzwgxvb13j2pcxl72qr"; depends=[MeSHDbi]; };
MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.7.0"; sha256="01m12jm4wwkdh9zkajl1fh9193pkys23m33q0zxahvqaknainv3b"; depends=[MeSHDbi]; };
MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.7.0"; sha256="08991vxjyqxybi91msicrxdxi60js6gynnhkxdybhcdn0rq3q03b"; depends=[MeSHDbi]; };
MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.7.0"; sha256="188jk2yx2xkyd9nr55jx0w2ki6fk5a10hc39zzs8c7ilb6azj973"; depends=[MeSHDbi]; };
MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.7.0"; sha256="0csch7hs1hvabrhpvm8hwv35iqhllisf3xr9j5b3lhysdxm9awha"; depends=[MeSHDbi]; };
MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.7.0"; sha256="1qr5d4zf6778bqrmxynjzl0hjvfgfbk42wldw6c40cqa51caav5x"; depends=[MeSHDbi]; };
MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.7.0"; sha256="1cwb68y7sn8gnhwcm05dry9aaq2jjphvwfnl5yh0fddw7x31nsc6"; depends=[MeSHDbi]; };
MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.7.0"; sha256="0dbpxc3syrw5s59cwl36skzi9d5j557aacq0j5kcwahy8abb1pk9"; depends=[MeSHDbi]; };
MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.7.0"; sha256="06fckdyfrwdh3ijz6bcikr4fsd69adlcjb54brwqqaak14lf06w4"; depends=[MeSHDbi]; };
MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.7.0"; sha256="1wxh3lhbc8cy040dhkwjckxc2q6laxb8wrvzd1lg72vijzsnyvlg"; depends=[MeSHDbi]; };
MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.7.0"; sha256="1fz9l962w0mi8a6ch54xa4qn5v7kkva21n7q68yd4d4irm51dcac"; depends=[MeSHDbi]; };
MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.7.0"; sha256="0pfx33qs6m5m5i85ib8agbdg58w8g0af188rl0jdyxrfkbfaj9v9"; depends=[MeSHDbi]; };
MeSH_db = derive2 { name="MeSH.db"; version="1.7.0"; sha256="0zinr1wbbw3q05zcaq5xaqn0gqx9z9rdhdc89g1pj6f13mhs7zz3"; depends=[MeSHDbi]; };
MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; };
MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; };
Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; };
@ -232,7 +233,7 @@ in with self; {
Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.3"; sha256="1vsfhradfhk087vzi0jzkd7qab72g0v0x9s1rr7wblw7wjz48299"; depends=[AnnotationDbi RSQLite]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.3.0"; sha256="11qd5mjqksvlsqsgljgaffrbzzbsnf8d1xx38a135fk3cgmk9vb4"; depends=[AnnotationDbi]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.4.0"; sha256="1s50z6g6azm9jbxbfq2qlciapm31pv5rsylgpy4p0wsc9dbxh723"; depends=[AnnotationDbi]; };
POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
@ -258,31 +259,32 @@ in with self; {
TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.3.0"; sha256="023n916nxmb1l42sbzlknfmg6y1ad2s27bfhhxpvwl2c8mbbi2ci"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.3.0"; sha256="06ax8wnqzi0jk0c4asxczvfcfg03b46vksfr3lfcnfij96ksb9mh"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.0"; sha256="1grg9vjsvlrcfdnn25q5rnr2d92ff73xfpv9fh215r23b552a5f5"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.0"; sha256="0sz0jd08kh604kq830h4k5g7f3dpqq0dypz0jyc1hp7mf367h16b"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.3.0"; sha256="0h0n3yqdzqip1ikqq396pziyn0l5651yg87bb0cgc3gy2ldsrl74"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.3.0"; sha256="1kgwb63z37zq5mspqzf2rb09vl8b71kn8aa3fsmyn8phmhay98zw"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.3.0"; sha256="1wjzhbc6kqxdwbl1g1nc3ljvphqd7d9qx9dgfr31x100ddjgpkc6"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.3.0"; sha256="0bmc3hi953dildf89in9njwpy32mddxynami04z903ijsm26nkvi"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.0"; sha256="0vgvjb6jqzqgmnnqjx9qdn2by01p1pfrqd1ks91q2db6wqcm5jjv"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.0"; sha256="07d21x4sw4gwszi32wjli9hczgr1g579pq0zyzndwvkibqawvdwh"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.1.3"; sha256="10250vgk5b9k7852n0ah47c4n535603mdm4swwlwbsh44438n544"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.3.0"; sha256="1gdmfi5v6cy22f7np2sn51l1vnq0v689iyg59sm7fhfggvlykndf"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.2.2"; sha256="15p0n8snfsc3lml2zsmrsn5w4nq3h0pgvw82z0y6i43g0wg8fzl6"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.2.2"; sha256="0cvqp1pv632br5bd84g2ymb67hm4ijwqk43pycvwb2fvhzgx089c"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.0"; sha256="0ap8qn2bza0j9ismnpv2l64wdbzc9i0q6sb1w195134hwq9cr51y"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.0"; sha256="1d61p9aj2wv4gdx2q5g33j7hipzfj1a4zi6apn058cffy1clyrn9"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.0"; sha256="08gava9wsvpcqz51k2sni3pj03n5155v32d9riqbf305nbirqbkb"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.3.0"; sha256="08qf0n15hm0wacvp70gr5pcwn1y64zk0z0ya3cx5h1w6ci7cpdlf"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.0"; sha256="08kihk3sl1hw32rf8122y03grbg1xdbc84z1b2ldnf752xr4zn9x"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.3.0"; sha256="13qhwb5x4813binp8grl41rd07j1h9agld8zmnkiqw7c1sdz3q7b"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.3.0"; sha256="0jpvrn8wq4wl4d2kh4n133nla43f94ym2rjh5f45d4kikqk6xl2i"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.0"; sha256="1p3m7g24x7pvavwix5r5kyqsklv7hxav23nz36cs7gsqh1ifizaq"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.0"; sha256="1f1b16ya35x7x5x2j7a62qlg2ka5wd3521kfbk2xp4dr8h5ah6mx"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.3.0"; sha256="18hbrp5agka35zhqh4d809yx16brri5hi08pcpw41v3q3pk1599c"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.0"; sha256="0jpvb3phw0967my7afk8scsjzpq1x0i2za534ndizzql3cp45yh7"; depends=[AnnotationDbi GenomicFeatures]; };
XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
@ -290,22 +292,23 @@ in with self; {
ag_db = derive2 { name="ag.db"; version="3.2.3"; sha256="1h0nb5z742pbh7hc8bwqkk9vh16kac8m3h3bh4v5flqfqw6rn8d0"; depends=[AnnotationDbi org_At_tair_db]; };
agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; };
agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.3.0"; sha256="1w8bylv1v1v4v51jwddvvq12j1gxm0p53s640w4h07p00d28szjv"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.3.0"; sha256="0jnkdy084zl3mpyhnxgfmc15sf6kb5hn47h3380s6w7chxz7c4as"; depends=[AnnotationDbi]; };
alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.0"; sha256="1bcqn20a963l49ah3j59nmd5qd15qad56p7k3880q4cp7qza2xsw"; depends=[AnnotationHub]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.4.1"; sha256="0pzd8yij4ixdp48sr0ksjdmx3mw9gaizgj1rx33375a7091580yf"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.4.1"; sha256="0rcpiaf0157c8v433a7khnam6g15siai1xbmf4gviw5vgw8l5a9l"; depends=[AnnotationDbi]; };
ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; };
ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; };
ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; };
barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; };
barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; };
bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.3.0"; sha256="18206lazpa4xn82wfz17l2n51rkw3jisqbk04msb8s39fj6zfnkq"; depends=[AnnotationDbi]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.4.1"; sha256="113pi0dr4jc0vr2gfm8pkavz72s16bw3l6ml3hmvzjy89yg9r0s0"; depends=[AnnotationDbi]; };
bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; };
bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; };
bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; };
bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; };
cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; };
canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine_db0 = derive2 { name="canine.db0"; version="3.3.0"; sha256="0d6vhp39i5f7mmv6n5hq4m9yk0yj3kdpgnbfdhnzi400apf53da1"; depends=[AnnotationDbi]; };
canine_db0 = derive2 { name="canine.db0"; version="3.4.1"; sha256="11imzg70ffkfnb1q6i9q3mj033ncl9pmzpkv2wp3nc3l5nz8z2sg"; depends=[AnnotationDbi]; };
canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; };
canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; };
@ -315,12 +318,20 @@ in with self; {
celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; };
celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; };
chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.3.0"; sha256="0zqaps2cf6c8zsra9x6z98dgpyp65hc7p1bx5qjn047v24swpgs5"; depends=[AnnotationDbi]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.4.1"; sha256="0gfd9nrkdnjymqdssijp5r9mdj2r6bmnkf6y4xh6ri90b02d1xpf"; depends=[AnnotationDbi]; };
chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; };
chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.3.0"; sha256="0n655psk47zvdgv4kfjr8ffqz78pimvqbhixlscfiwss01vaspa0"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.4.1"; sha256="06z4kmpnsj98mi5j0ahz57grlbdqb8ycl8rf592561lvmzzdfs8h"; depends=[AnnotationDbi]; };
citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; };
citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; };
clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.5.0"; sha256="0hb3bsdh79aajgb9vk34kpd61py6rxv4vm8ygzm531nrh44s7a33"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomdhumantranscriptcluster_db = derive2 { name="clariomdhumantranscriptcluster.db"; version="8.5.0"; sha256="1kfv4f0jbd4a63mk83jhpbhfhlyka9hwfik7i52kszkb8grgz48d"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomshumanhttranscriptcluster_db = derive2 { name="clariomshumanhttranscriptcluster.db"; version="8.5.0"; sha256="07x7gl4p9dyrk41hx6d5ddsj3raz7gqimc79irfia2ismazwvd95"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomshumantranscriptcluster_db = derive2 { name="clariomshumantranscriptcluster.db"; version="8.5.0"; sha256="0h4i35pglq6mwxxflg7l09f8a1xvhnrjygns54bnv8cyj97vq2a3"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomsmousehttranscriptcluster_db = derive2 { name="clariomsmousehttranscriptcluster.db"; version="8.5.0"; sha256="1qvn0dpakh7g43wrssg2wyy5zi5axs7bqfmc97d8jgk56rwyzh46"; depends=[AnnotationDbi org_Mm_eg_db]; };
clariomsmousetranscriptcluster_db = derive2 { name="clariomsmousetranscriptcluster.db"; version="8.5.0"; sha256="17y506pcfq8x9g4xl6wm9di545bgbzc54mjlybmz19c56456z5w9"; depends=[AnnotationDbi org_Mm_eg_db]; };
clariomsrathttranscriptcluster_db = derive2 { name="clariomsrathttranscriptcluster.db"; version="8.5.0"; sha256="18dxnpvck3qfw660mx70d8psa1grzv9h43zf36qa6m958ybmcq19"; depends=[AnnotationDbi org_Rn_eg_db]; };
clariomsrattranscriptcluster_db = derive2 { name="clariomsrattranscriptcluster.db"; version="8.5.0"; sha256="1ds9vssyg9zpp99zzd6110k1x9v2ji455k7xmk4nd699y1vfc67x"; depends=[AnnotationDbi org_Rn_eg_db]; };
cottoncdf = derive2 { name="cottoncdf"; version="2.18.0"; sha256="0xfwwla941fbxddykgizpar8dh8q459src7kc5wyrsd3swp3zyp5"; depends=[AnnotationDbi]; };
cottonprobe = derive2 { name="cottonprobe"; version="2.18.0"; sha256="04mfjd3a7ikif4pv46s6h9dj2s912w8ihg4yyiii7s3jlmvy62ah"; depends=[AnnotationDbi]; };
cyp450cdf = derive2 { name="cyp450cdf"; version="2.18.0"; sha256="1mbqn9940sxc0ksvykdk3i4jvnkv9q91igwn1rwmv2z18hz18qf0"; depends=[AnnotationDbi]; };
@ -333,13 +344,14 @@ in with self; {
ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; };
ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; };
ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.3.0"; sha256="00cjwrlkr2y6m4x30n39iykiwb4r36s7pp0qzg4v2xgq178n3jsv"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.3.0"; sha256="1p5br2s8wfrxa20kg800nn90qz29j8459wp90bkhprya2h8f2pf4"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.4.1"; sha256="1v9qa6pxwwc3ykh8nasi42vld07c9il0j72vfc8lpsxi9v56l5cs"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.4.1"; sha256="18shfvqbv925xi694zv8c1mfxndrnsmkxdncncld11ra17wqs6cp"; depends=[AnnotationDbi]; };
ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; };
ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; };
ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; };
ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; };
fly_db0 = derive2 { name="fly.db0"; version="3.3.0"; sha256="00nk8rwnrl8j2k3pafppzaiipfmclhgdlbk54zj41jakrqd5cmk2"; depends=[AnnotationDbi]; };
fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.4.0"; sha256="1nlbmzngg077p1bz462qsyvhc9k6pn2vzmvmsqs0hwrxsk2myvgq"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
fly_db0 = derive2 { name="fly.db0"; version="3.4.1"; sha256="10bh5mrl163w433fr8g8n5b190wqcldxvxdamw13gwn79hymbjr4"; depends=[AnnotationDbi]; };
gahgu133a_db = derive2 { name="gahgu133a.db"; version="2.2.0"; sha256="1ikyvj1gi39qbakpn5wl0823ljavng1k33zvpf2k24jdhdw927qb"; depends=[AnnotationDbi]; };
gahgu133acdf = derive2 { name="gahgu133acdf"; version="2.2.1"; sha256="0hvd4iwj2fjiqp1jzbz68i1w6jn77nrsih316jlj85bhb35f7cyv"; depends=[]; };
gahgu133aprobe = derive2 { name="gahgu133aprobe"; version="2.2.1"; sha256="108lki2bg55ysh485shxxsz1imm26g5a3grgcmxbfs4pgna3g4h0"; depends=[AnnotationDbi]; };
@ -439,8 +451,8 @@ in with self; {
hom_Sc_inp_db = derive2 { name="hom.Sc.inp.db"; version="3.1.2"; sha256="0l9nly3k7jnf6g1qnwyw22ga1hdyjdvn3hrlway8pb9rv7279bil"; depends=[AnnotationDbi]; };
hs25kresogen_db = derive2 { name="hs25kresogen.db"; version="2.5.0"; sha256="1yp25ifm3bwzkzm8vimlxw5slini7drhvmh5ggh0z80sfrjyndyf"; depends=[AnnotationDbi org_Hs_eg_db]; };
hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; };
hta20stprobeset_db = derive2 { name="hta20stprobeset.db"; version="8.3.0"; sha256="05blv54srnw7yrs8x32syzk1xdksrl8gswk837m7qjgciq8hazcn"; depends=[AnnotationDbi org_Hs_eg_db]; };
hta20sttranscriptcluster_db = derive2 { name="hta20sttranscriptcluster.db"; version="8.3.1"; sha256="0ana9fg3ms22m394w8qbfvfy663l0r163w0qfwh5ir59rs4bpalf"; depends=[AnnotationDbi org_Hs_eg_db]; };
hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.5.0"; sha256="0d1gydcxgcxgchg7imlbkc6acz6py894v6m2i7wl6mpm793az7r6"; depends=[AnnotationDbi org_Hs_eg_db]; };
hta20transcriptcluster_db = derive2 { name="hta20transcriptcluster.db"; version="8.5.0"; sha256="114l2jh1zg4jiirw2gp5djp7x4yf9l9x4hrxfflzzk2b0gc66fwk"; depends=[AnnotationDbi org_Hs_eg_db]; };
hthgu133a_db = derive2 { name="hthgu133a.db"; version="3.2.3"; sha256="0sgi7pbkndcpl775qn36rdlsm4j6ip2lfk0cmkh8zqryrj3yq6hh"; depends=[AnnotationDbi org_Hs_eg_db]; };
hthgu133acdf = derive2 { name="hthgu133acdf"; version="2.18.0"; sha256="1a5b421lx0nxy3mrrxjxifwjpnv289c5q2a89xhnkwlcfhqlzqrp"; depends=[AnnotationDbi]; };
hthgu133afrmavecs = derive2 { name="hthgu133afrmavecs"; version="1.3.0"; sha256="0466xgi67r5rpp7cs06ib0cr6vvx8d881g5l96b8sh9948pbn4ss"; depends=[]; };
@ -480,20 +492,20 @@ in with self; {
hu6800subccdf = derive2 { name="hu6800subccdf"; version="2.18.0"; sha256="1xir2k62whqf39g7g5rm646nz6hxq83nldrrc3cyzch85723a55p"; depends=[AnnotationDbi]; };
hu6800subdcdf = derive2 { name="hu6800subdcdf"; version="2.18.0"; sha256="1caiyyna5ffnnx85h9f62h2fwd42wwi187g9igspcy8mn2hakpfw"; depends=[AnnotationDbi]; };
huex_1_0_st_v2frmavecs = derive2 { name="huex.1.0.st.v2frmavecs"; version="1.1.0"; sha256="0fnadflyg615v7w071jilg42w8w5fvnac7rm0wg33klvzx9c9knx"; depends=[]; };
huex10stprobeset_db = derive2 { name="huex10stprobeset.db"; version="8.4.0"; sha256="1kppimky5d2qnl7sv4xnghb477lwizjy5zznrd9dkvxii5msyf2v"; depends=[AnnotationDbi org_Hs_eg_db]; };
huex10sttranscriptcluster_db = derive2 { name="huex10sttranscriptcluster.db"; version="8.4.0"; sha256="1m3s1bnwvr50jcpwqax4bnlcan9j01l4q01jg3yaf62ww9wlhdw2"; depends=[AnnotationDbi org_Hs_eg_db]; };
huex10stprobeset_db = derive2 { name="huex10stprobeset.db"; version="8.5.0"; sha256="0yrc5hf2yhxr33xr7mlrljbndbxl1mcv1ylnfak8wnhkzlbz5ir1"; depends=[AnnotationDbi org_Hs_eg_db]; };
huex10sttranscriptcluster_db = derive2 { name="huex10sttranscriptcluster.db"; version="8.5.0"; sha256="1ybxzqqpxfdjpw7mkyn1ydyghgsv5yfp27byi3yifpjz3ymm0lzi"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene_1_0_st_v1frmavecs = derive2 { name="hugene.1.0.st.v1frmavecs"; version="1.1.0"; sha256="0jwk5mm37fil3h9h1hrc4bm3sxfdzywbmsqm1blvrvb5q6jgl50a"; depends=[]; };
hugene10stprobeset_db = derive2 { name="hugene10stprobeset.db"; version="8.4.0"; sha256="1a6jsr65hcj5799iymrzhn2r8cnjp8916hixacjks01z5civzgfb"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10sttranscriptcluster_db = derive2 { name="hugene10sttranscriptcluster.db"; version="8.4.0"; sha256="03bvwawba9r8ayhzjiszn60h5v4qms64xk11q3qfj5d5kxc61374"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10stprobeset_db = derive2 { name="hugene10stprobeset.db"; version="8.5.0"; sha256="1sh6ca1abnd5a09rcpa99gfpcnl0vjk49v8hnkbrzlrm8b6z603a"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10sttranscriptcluster_db = derive2 { name="hugene10sttranscriptcluster.db"; version="8.5.0"; sha256="0ydqq477ms68q8g7k8zj5mz609cdyk5ly5mxvvkzpbfrw7r663jd"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10stv1cdf = derive2 { name="hugene10stv1cdf"; version="2.18.0"; sha256="1drsclrcf344z4m61qxd1a1lg2qrd2h7s3y6kk7xcy76s2mqjx2f"; depends=[AnnotationDbi]; };
hugene10stv1probe = derive2 { name="hugene10stv1probe"; version="2.18.0"; sha256="1cn6hdw1mj0i4f0syvx8g1r02bbki994y3s9hrdps3kvcbaw6brd"; depends=[AnnotationDbi]; };
hugene11stprobeset_db = derive2 { name="hugene11stprobeset.db"; version="8.4.0"; sha256="0sycgmzzmaf1aqi48f4nvh9y514n4f4v3cd3cdcq926grajv6l2v"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene11sttranscriptcluster_db = derive2 { name="hugene11sttranscriptcluster.db"; version="8.4.0"; sha256="19v0zkqz81v97np2azbnrxnmw19a5z1fh523d2y28hiyp0z62hlr"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20stprobeset_db = derive2 { name="hugene20stprobeset.db"; version="8.4.0"; sha256="1dh9115c1nd1a744adxcgjk2rxhj5ngvh6v4l1832a659z1q85lz"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.4.0"; sha256="16ynwlnl5qkf3in7b08lf8k5v1q0sr0zd2hl52pl8yvpqxsm7sdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.4.0"; sha256="07cza2h7r0ipc4c3z14gw2vca4zqx2l0s41hz5fj0g6ss2a7n2qj"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.4.0"; sha256="1xqwq17xvmfbhy89di2gwg8c7r52ihp50qckqiqi0qdv5w59vbfj"; depends=[AnnotationDbi org_Hs_eg_db]; };
human_db0 = derive2 { name="human.db0"; version="3.3.0"; sha256="18kfi5g4v2d15dkkn4nrm14cqaz47ihaj2w4c2bazq0qcyc4iy34"; depends=[AnnotationDbi]; };
hugene11stprobeset_db = derive2 { name="hugene11stprobeset.db"; version="8.5.0"; sha256="1akfj1z69s5kda10rybbpx0gl1ziwjq8nf0vr0sd24vzn3z0ml34"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene11sttranscriptcluster_db = derive2 { name="hugene11sttranscriptcluster.db"; version="8.5.0"; sha256="1shmhzqy5zjaj564j6gfhs5plg3rhiz46qk2mkm7xyysgkjwwq90"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20stprobeset_db = derive2 { name="hugene20stprobeset.db"; version="8.5.0"; sha256="1bxhlz983ar0m72rlv3vyqkl9gyqkndyv896yyim09ah8hpln24k"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.5.0"; sha256="1cz6080w523j1dvbrgslkw1qs9bspci7086azz0xn4pmqjrkr78i"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.5.0"; sha256="0wcjldj9vxf73c2j9wmkra4kfd3n34yhicj53svgkcb2s9ldj8mq"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.5.0"; sha256="0ndcpkkqa5bq8g70bf1119vs1pj0hzkqlmm1bxy3zw86by06gass"; depends=[AnnotationDbi org_Hs_eg_db]; };
human_db0 = derive2 { name="human.db0"; version="3.4.1"; sha256="0dpxa3ifmqsg63rzcz333iqkhg8hjipfyvl18899d11cxxcm9wh7"; depends=[AnnotationDbi]; };
human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; };
human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; };
human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; };
@ -531,7 +543,7 @@ in with self; {
m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; };
maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; };
maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.3.0"; sha256="17s27vzxlpzrz8hy9z91fl2azbg82519fy5j2mzrk3h6429v7289"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.4.1"; sha256="041qsj8dkpavjs444v5fyhfzl7p6s2fx6ny16m36ak3g0w528bnf"; depends=[AnnotationDbi]; };
medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; };
medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; };
mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; };
@ -559,7 +571,7 @@ in with self; {
mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; };
mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; };
miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="0.99.5"; sha256="0cxkxy42ybnls6396m4svm4iiw0x29fgg98dfwpgwfv5np85m0vh"; depends=[AnnotationDbi DBI gtools RSQLite]; };
miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.7"; sha256="0h7s83cqr8xwypizdhkgx4nl4pxbr3lhnjwgnwcdibrpq3mbq5cj"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; };
miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; };
mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; };
mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; };
mirna10cdf = derive2 { name="mirna10cdf"; version="2.18.0"; sha256="146gc1dx071vawn29k2m31zpi3wdwykss4qh8znpmbp5qcja4hyb"; depends=[AnnotationDbi]; };
@ -572,20 +584,20 @@ in with self; {
moe430b_db = derive2 { name="moe430b.db"; version="3.2.3"; sha256="0hb6pa07j5hdirpprcm9vdszbh5bkgf38gyp3g0gqvlc32nklv58"; depends=[AnnotationDbi org_Mm_eg_db]; };
moe430bcdf = derive2 { name="moe430bcdf"; version="2.18.0"; sha256="0yl5pkqj37188k2yvvsqhnhm2vx523r11sry976bwzcadlicfhvb"; depends=[AnnotationDbi]; };
moe430bprobe = derive2 { name="moe430bprobe"; version="2.18.0"; sha256="1nziw3pj4picz0aazblpqkbw82wq3vdajh9i78yfvlz1bwb2vpfi"; depends=[AnnotationDbi]; };
moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.4.0"; sha256="0f7xxq0n5c5cp9axaxjmi9dhqfznjiifj98yxz1cgzkihgw7fwry"; depends=[AnnotationDbi org_Mm_eg_db]; };
moex10sttranscriptcluster_db = derive2 { name="moex10sttranscriptcluster.db"; version="8.4.0"; sha256="0cg16g8i58a2dzkrpa39gjw4cz60ii9d8x4amgwk01j77lbmxwmh"; depends=[AnnotationDbi org_Mm_eg_db]; };
moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.5.0"; sha256="15i8fqp6r5q39pyhnpfqcwpqw4iar1yf9id391js0fbpz01n0hq1"; depends=[AnnotationDbi org_Mm_eg_db]; };
moex10sttranscriptcluster_db = derive2 { name="moex10sttranscriptcluster.db"; version="8.5.0"; sha256="0idxw02vyyspkbcd80al8h3l991v9n93d5cfag9f54hriz6ra5q8"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene_1_0_st_v1frmavecs = derive2 { name="mogene.1.0.st.v1frmavecs"; version="1.1.0"; sha256="00lyakg7dhsm3jkh011mfq1vy439mds64zpm6fgyq592x3k9w2ah"; depends=[]; };
mogene10stprobeset_db = derive2 { name="mogene10stprobeset.db"; version="8.4.0"; sha256="0z4szr7gxrfqdajzlz38z1l4i87lfwjsidhxa2kp4a5sm0kcpp2y"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10sttranscriptcluster_db = derive2 { name="mogene10sttranscriptcluster.db"; version="8.4.0"; sha256="1hv7ninsn834if8qwywa033ycf6sifvq3p38h6bkr83gdjzk1pfh"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10stprobeset_db = derive2 { name="mogene10stprobeset.db"; version="8.5.0"; sha256="08nc0qn8kn4nfsxv0nxyrs9d3rw4schgl1k9sfhav1a0zp9gak5a"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10sttranscriptcluster_db = derive2 { name="mogene10sttranscriptcluster.db"; version="8.5.0"; sha256="005ahfhnhdxfivhwk1qifph9civ4411clq9h7km9m4ldn0bsg23r"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10stv1cdf = derive2 { name="mogene10stv1cdf"; version="2.18.0"; sha256="1zhq08zsghck39ly7ymcjanzgw3xy1hqw435hwcrrlipv6i4lbmj"; depends=[AnnotationDbi]; };
mogene10stv1probe = derive2 { name="mogene10stv1probe"; version="2.18.0"; sha256="1qjnsf6cv23gnqdpcy1xqxy807y91fnaiyh95hg99v932pvika6a"; depends=[AnnotationDbi]; };
mogene11stprobeset_db = derive2 { name="mogene11stprobeset.db"; version="8.4.0"; sha256="1gvn50r1slchfczhf00ylflpgka11l98rfvi25w6jgm433l2dknq"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene11sttranscriptcluster_db = derive2 { name="mogene11sttranscriptcluster.db"; version="8.4.0"; sha256="0nw9k3wfgssfwrxhw9nnqwjz6vzgrljd1g5gs2bw4f2isa4dzfvn"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20stprobeset_db = derive2 { name="mogene20stprobeset.db"; version="8.4.0"; sha256="1pqf0dqd3apb64cfsmd1rs3vhx76ixf3hx01y4np2khl33spng3v"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.4.0"; sha256="0sbms5rld5x53cjk5yaxl9j37kni37j9drar4a1b94s6cxsh0ydf"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.4.0"; sha256="1nbvq5v114ziqjiijxjji703c30h8fv7f1qvzj1bgr5cssv60bbl"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.4.0"; sha256="111b5pvq4l25wghys2ba9f1g8n5d4y8dqvzi7iivdx17jy61jqm7"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.3.0"; sha256="13vm1zi33glpkc0sl166gni542825f1pnbj2qqh5yqlp6i00whxf"; depends=[AnnotationDbi]; };
mogene11stprobeset_db = derive2 { name="mogene11stprobeset.db"; version="8.5.0"; sha256="1zkhix305yn3s3a9bvngi62gcnmr516cr48i9mcfc4wm32vlvqwx"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene11sttranscriptcluster_db = derive2 { name="mogene11sttranscriptcluster.db"; version="8.5.0"; sha256="0ginnqn5p5gqha2w888i3v62qr1as4vfa3ffid3g6ylc7wr8q57c"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20stprobeset_db = derive2 { name="mogene20stprobeset.db"; version="8.5.0"; sha256="1wlnbz5lycwpcj152yf683gvidymr9clyrq3sknkskdqkk6m0k11"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.5.0"; sha256="1pk5z46pgj1fknknsl0cxpfmrnkss69c9apw5nxvg3kjm4m3zsyv"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.5.0"; sha256="04j1ga7jfgp72pwa99p5yd7g4vk0k5964srdrpr7p9xi5664ac4r"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.5.0"; sha256="175h9jaqjqhabxi3ydrmr8ykwyzw078frqj93p55b8gdwccbngzb"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.4.1"; sha256="1b03kqwpnwhnmv6x0cgn24qsl75hvcqmqpc1mlw8ms7hlbvaiijg"; depends=[AnnotationDbi]; };
mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; };
mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; };
@ -596,8 +608,8 @@ in with self; {
mouse430a2probe = derive2 { name="mouse430a2probe"; version="2.18.0"; sha256="1f7a6mvcpv57h7kfj1qzkcwh7mdl2w9z6ysmrgan9037rd0652sz"; depends=[AnnotationDbi]; };
mouseCHRLOC = derive2 { name="mouseCHRLOC"; version="2.1.6"; sha256="0xylgnz43xmjnqdwv7pn034wfs61va21lvcpn9igdik2s42ykpp2"; depends=[]; };
mpedbarray_db = derive2 { name="mpedbarray.db"; version="3.2.3"; sha256="04pwchivzb19awnnqr9an0nl49rgdva58ip1fkgbavp3vlirxv4i"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10stprobeset_db = derive2 { name="mta10stprobeset.db"; version="8.4.0"; sha256="1chc4ld5g8dmy33vrvprx08yp2vasmr4x6m8bswhfyigzf6n3d6w"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10sttranscriptcluster_db = derive2 { name="mta10sttranscriptcluster.db"; version="8.4.0"; sha256="0f890nbnc27hnfazdyyypb3k6sla1ipijb8fvfqfld40nm1is978"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10probeset_db = derive2 { name="mta10probeset.db"; version="8.5.0"; sha256="0k7mpqbd02hyc77kiacxzrq661bc27hdfj04lsdg2szm9ij14c11"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10transcriptcluster_db = derive2 { name="mta10transcriptcluster.db"; version="8.5.0"; sha256="1qbj0ac3xfbl0xw0xj4xix2spswgdp91qqqck8arlafpyacjc71b"; depends=[AnnotationDbi org_Mm_eg_db]; };
mu11ksuba_db = derive2 { name="mu11ksuba.db"; version="3.2.3"; sha256="188ld7awcgrbqxkwqyr98739x4ihmcawv3lv2ybrc0khqifylzj3"; depends=[AnnotationDbi org_Mm_eg_db]; };
mu11ksubacdf = derive2 { name="mu11ksubacdf"; version="2.18.0"; sha256="09xm3ah3zlssclblx663rlwrnmx3niabd5nf7zf7krhbpgcwhyim"; depends=[AnnotationDbi]; };
mu11ksubaprobe = derive2 { name="mu11ksubaprobe"; version="2.18.0"; sha256="1p3kc06h83ivh06a8qqcbpgbsbdfp9nnwvqfxr6d1gdn15qcp96k"; depends=[AnnotationDbi]; };
@ -622,28 +634,28 @@ in with self; {
nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; };
nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; };
oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.3.0"; sha256="0fsjivcmwdfhvq45dikfgpni7725snncrv33pbird09hwy6n10vc"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.3.0"; sha256="1fhv5kvwwjfgnrrynala7bnjv0sxzr9isp32vhgx0gazl5krzyh7"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.3.0"; sha256="0sl6kxkdisss5y0c50n9f3ccbbk4kdwj1afkkqr3aay75fzm78hs"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.3.0"; sha256="17mvb2ci2jgac3zi420cbf70n4zswqinzxlk1v2fjnp8vvydl2fw"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.3.0"; sha256="1d5ip9d0236kp6i7z2wy6xgfb1nf0sjc8qyggjfan6pb2lsx2m2y"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.3.0"; sha256="15kzvw78xwa54yk1d69l6pmgny4726ydpdkk8lic26vr0yiwicla"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.3.0"; sha256="1823101yjvyc8x4gbmz7bijm2s5bd0fz4nv62glmaczlfc4lcwp9"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.3.0"; sha256="0hjffgii1pxmri7razxpilsk7scbdm8ingfwbgn6g51lyd5ygbj3"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.3.0"; sha256="15pn6kdbx2pf07dfq4knxbx3s7hf8zyip1c8hfmnvs5ixajivgxz"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.3.0"; sha256="0my3kjhfvzv6zwdaina7qcl7riqy2rj2z2v6x477plwbscixb9p7"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.3.0"; sha256="09zb43yjd82ny210n5a0wsrji4w56l2r6ana6d9lx0nn9mzd7rzp"; depends=[AnnotationDbi]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.4.0"; sha256="1rp0pipdfwwacfnznj65di2xny8ccjdfll882jp73yrpk8x6g9w5"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.4.0"; sha256="0176yrpjxdn83nvqlp24ad65fwqdfwk010lmygl0anjgnskxb3y2"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.4.0"; sha256="1cazky0p9rj8islivfhrmqal4q39h9hiq48mpmycpkh8qrrl7nyy"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.4.0"; sha256="12llfzrrc09kj2wzbisdspv38qzkzgpsbn8kv7qkwg746k3pq436"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.4.0"; sha256="07h339h4vh9dwb6jdr7hczcc1bka5gibi5g7b97jlpykn5qzqjrx"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.4.0"; sha256="1vzbphbrh1cf7xi5cksia9xy9a9l42js2z2qsajvjxvddiphrb7j"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.4.0"; sha256="0c1q78gbqgv915daalsgmm58xxqw4zsd3xf99m9kzfv7qd11c0nk"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.4.0"; sha256="14bv6gbznmdf3yhz2r4pqfbxc5ql7h2wv6n5alyir1fyy1gdyf0m"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.4.0"; sha256="1cgb7fg0c7z3f7x17b0ir8zzgvi4k1d64ryqy9mmfk9bg5n1f9y1"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.4.0"; sha256="0swfc1krsfgjhxgkhdnhq4x5ikviixk0pyacvl7f20gbyqlgxpsf"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.4.0"; sha256="19mg64pw8zcvb9yxzzyf7caz1kvdrkfsj1hd84bzq7crrh8kc4y6"; depends=[AnnotationDbi]; };
org_Hs_ipi_db = derive2 { name="org.Hs.ipi.db"; version="1.3.0"; sha256="06nkcjcavzwgnxzmbj05i4dapszf2wq7m5s0g8d6hm7kxz5wxddy"; depends=[AnnotationDbi PAnnBuilder]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.3.0"; sha256="0r939vfmsqqdwfimix1nv0bkhnixawy9c6avbclrncfanw3kgjax"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.3.0"; sha256="0awqg374j99j5g8z2am3cy0p92y68rsxss5b9by7mblxra4sy7gm"; depends=[AnnotationDbi]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.3.0"; sha256="0xydp19vacycxwkfc1r5z1sbhhmmg5kzv25jqrnm47lbvdsbzbnq"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.3.0"; sha256="1d0rrcpq3md5lavl3c9ypcbrg19l69p8abcxlzbqyn4rims6hsbp"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.3.0"; sha256="1d89gafdk0hra7c0rmkkbydvp23ayam186ydjcwydvpms4lpjssb"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.3.0"; sha256="1n251ds1gikv9ksgzy9a0j1z21kf18zj8q5b19zc0lh2pvgghhfh"; depends=[AnnotationDbi]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.4.0"; sha256="1lykjqjaf01fmgg3cvfcvwd5xjq6zc5vbxnm5r4l32fzvl89q50c"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.4.0"; sha256="0ba5z4fvv69bsw62wcx4smsz9fdlk01sql7scgi799ij9qzzd13v"; depends=[AnnotationDbi]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.4.0"; sha256="0miw8n5lqijfxw2q7lyxkp2srdf1rdfxyx8k87r279x23wxqgz12"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.4.0"; sha256="1dqj2japcbdqkisdla6aca4cjf4hbigf4gb2gn8abx5n1di0h2pi"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.4.0"; sha256="04az0yf3ngrz7nlbmmy9k97i9i8gf4dxbmgvd03vrv59y0x47m11"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.4.0"; sha256="01zc0kx0jrmcwly4bb3cy69x3zm7mkrffzx720mwphn61gzngz3z"; depends=[AnnotationDbi]; };
org_Sco_eg_db = derive2 { name="org.Sco.eg.db"; version="2.4.2"; sha256="1ppjl55059gk9jbh8c8xbsn2jlqz1hm650vm9gxnbd8hpnk63vgz"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.3.0"; sha256="1fcskfrq0r4iq4nv2rnpl6sb5xi53qqihnm1cjnfi00mgc767xw1"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.4.0"; sha256="17j0lvwp212zaxw5dx8488884v6b7l4hhzn2d14wisf8s3w1djig"; depends=[AnnotationDbi]; };
org_Tgondii_eg_db = derive2 { name="org.Tgondii.eg.db"; version="1.0"; sha256="1vq3qbk6jswfffj5lfwsic71h8ga7a6gqf6wfa7qcda3gvfhnwlc"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.3.0"; sha256="16k3c5ym289hsrg7qvsdz8l7saisyrf096d5nrxd92jw1ilzj31q"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.4.0"; sha256="1sbzmnxi9gvq3x86w6jw49qgzd7g58ilh1xmnvr840pz50b3n8j6"; depends=[AnnotationDbi]; };
paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
@ -671,6 +683,13 @@ in with self; {
pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
@ -716,7 +735,7 @@ in with self; {
pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.1"; sha256="0564lbkyxs2lvj6pcz5p9p19p5jxlywk7iiva0qfmb7pbmairk7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
@ -788,7 +807,7 @@ in with self; {
pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.0"; sha256="0kchpv8j55k07gm42sbpsw5mpg47cfj4m0jw8i70wbrhj866bilp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
@ -810,10 +829,10 @@ in with self; {
pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; };
pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; };
phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.3.0"; sha256="1mdwkd75ljmshyprg5ns9880ck9hrq7015s413sp64d2fxj206z5"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.3.0"; sha256="1f5nq7chb5k5ahgwbjl0d67c382hvn50g0yz56l4ny1gwbgyamk7"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.3.0"; sha256="035zap0igcfvrncq7pc1y6f9whnik0izchqjidf6z0cdyhv3h088"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
pig_db0 = derive2 { name="pig.db0"; version="3.3.0"; sha256="00lk4i3cvq3z14fxkyj393aa8sq70c9icd2srwkpgxhw51w8l3wz"; depends=[AnnotationDbi]; };
phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.4.0"; sha256="1xkrm9s3x301g8kf0p60dcgx3irmsl8jfaayxbw3zgfyyr0nb1mw"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.4.0"; sha256="0d99mmih14s7mw0qsp2izdhi6fc59aamz160p0p9jpfbd8v4fz0g"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.4.0"; sha256="0r0wb1yj0ahkhql45n4jcqc2jgac5nshrjk3vn0w8sn80mxzialj"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
pig_db0 = derive2 { name="pig.db0"; version="3.4.1"; sha256="1rkkbxk33nj8n2cijsh109xa49dw3b8hj05h396z0g6k2rflkxhx"; depends=[AnnotationDbi]; };
plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; };
plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; };
poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; };
@ -830,26 +849,26 @@ in with self; {
rae230b_db = derive2 { name="rae230b.db"; version="3.2.3"; sha256="0rjs9lijabhxfrs6m9qri7a1c10zm1mxqx7bbip366cw069f5dx4"; depends=[AnnotationDbi org_Rn_eg_db]; };
rae230bcdf = derive2 { name="rae230bcdf"; version="2.18.0"; sha256="1j2i49cp042nk3rkf8q6gxcnwd5cihz1nyg8r6yndkja51r41pi8"; depends=[AnnotationDbi]; };
rae230bprobe = derive2 { name="rae230bprobe"; version="2.18.0"; sha256="1smqs93fks4rd5g9kk7cacnpsnj4rjr0d6fl2i01mdiihfi3csny"; depends=[AnnotationDbi]; };
raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.4.0"; sha256="004h4z10x84w9bk71y1a22r51hh52xhpvdr1flr6crgxvhh0icis"; depends=[AnnotationDbi org_Rn_eg_db]; };
raex10sttranscriptcluster_db = derive2 { name="raex10sttranscriptcluster.db"; version="8.4.0"; sha256="1ndjr34s6bbaa6bl6922asw90hnyzllm5w2bd7n0vxasgjl434fq"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10stprobeset_db = derive2 { name="ragene10stprobeset.db"; version="8.4.0"; sha256="1gqvgcgvnqhgibava8rp1izz2fgncpdyw2qm5hkxqkkw3gy7kf8p"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10sttranscriptcluster_db = derive2 { name="ragene10sttranscriptcluster.db"; version="8.4.0"; sha256="1sbda37zh5p7dx2rsgfa2mjc3yrrskzp2cpgdk5vi1m94lqs651w"; depends=[AnnotationDbi org_Rn_eg_db]; };
raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.5.0"; sha256="15i8inp73n8acjrs6z0hk88lgzjrcqd9vr5cv4vnsdzmzbnhrxdd"; depends=[AnnotationDbi org_Rn_eg_db]; };
raex10sttranscriptcluster_db = derive2 { name="raex10sttranscriptcluster.db"; version="8.5.0"; sha256="1r0rg2ifiswbf5a2zahm9823vnahii9s2vrhprbj87rbl7wm19xl"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10stprobeset_db = derive2 { name="ragene10stprobeset.db"; version="8.5.0"; sha256="0zywhbxajqcmfl90r95r2ghas4zrla92rjc5qa7vf57cas40pk1s"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10sttranscriptcluster_db = derive2 { name="ragene10sttranscriptcluster.db"; version="8.5.0"; sha256="1wiichdhfi20lav0vqi80jw0k8i6pbsrdlark8x397sn1acynn3q"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10stv1cdf = derive2 { name="ragene10stv1cdf"; version="2.18.0"; sha256="0fm2yj6nn3v1wiscjb53hm4ylh5cgxvs7qgc9sbsbpv7agr0bzng"; depends=[AnnotationDbi]; };
ragene10stv1probe = derive2 { name="ragene10stv1probe"; version="2.18.0"; sha256="0cb3a908hixcakl41ay4yyfm9r97ln8gjidn4rs1hr7qaplfj1mh"; depends=[AnnotationDbi]; };
ragene11stprobeset_db = derive2 { name="ragene11stprobeset.db"; version="8.4.0"; sha256="023md8y6wmfxa6cmj6ld1j22g48xc9clbibixm4zx73av9qjjm47"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene11sttranscriptcluster_db = derive2 { name="ragene11sttranscriptcluster.db"; version="8.4.0"; sha256="1lqypb7s4jifgga2fzk0q6662m28yn4qkw0axcbal2hqn37rsm30"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20stprobeset_db = derive2 { name="ragene20stprobeset.db"; version="8.4.0"; sha256="1hi6zq13l9vjimppmp3y6bznbwh08l0g1wcfva0ihgyw0mj5klwc"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.4.0"; sha256="18v7f7i6r9byq5sjr9pxshqmbr6p2iym3gv95lqqfg4qlgiri991"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.4.0"; sha256="0qfhb9fpydfh9n0d41pky46zsjabg7cpmyg6m59v529s22xw1mhw"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.4.0"; sha256="04cm1248iphl4n7avjr29ac44kgvhj8fkwxvb5wsyrjdfs15swmm"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat_db0 = derive2 { name="rat.db0"; version="3.3.0"; sha256="1dsb56lldvq8a75ryx7b1wvzaw9w8x0b1kjsnhd8jh2qj2rai2d5"; depends=[AnnotationDbi]; };
ragene11stprobeset_db = derive2 { name="ragene11stprobeset.db"; version="8.5.0"; sha256="1qsrj2r0j4819rx2m6ahxz8fhpwz5cv6srysl585igipjy1caq43"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene11sttranscriptcluster_db = derive2 { name="ragene11sttranscriptcluster.db"; version="8.5.0"; sha256="17np61fr5n545ilr4xlwsc559ni7rc38ns67x41lj6gnaz8cpmiy"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20stprobeset_db = derive2 { name="ragene20stprobeset.db"; version="8.5.0"; sha256="08g7wnfmxai9klscb7yywj6p8yfnid8px3qqwkn2s2r1iwi46azg"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.5.0"; sha256="09qcsbhl81j4wiz90fw6ldy97x821w72wywqik6rrsw1qhyaizkg"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.5.0"; sha256="15920i2wdyn5j0gn8nxdv1dvwhkmh1swzkazj5zqrg304xhrv1ki"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.5.0"; sha256="08gzlnbng7vhc3kw72lvrzp8f6799vr8b4c4vkdzwsrhd4hs60hf"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat_db0 = derive2 { name="rat.db0"; version="3.4.1"; sha256="0zzf91wbincgp75mwjx6q13xayb46giqv8vrz1wx8pmw2halqiy4"; depends=[AnnotationDbi]; };
rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; };
rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; };
ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; };
rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; };
rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.55.0"; sha256="1q3cikzvbywzcrihnw5hizb8fylf1mfbwyrlyxcnw5hb522f5x8n"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.58.0"; sha256="191bz92rr446g8w4m4wr9c51ykfqaj65vp7adb56wch7r8llawrl"; depends=[AnnotationDbi]; };
rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; };
rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; };
@ -863,7 +882,7 @@ in with self; {
rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.3.0"; sha256="0xq7bvargvwv06xzalshw7iz75incm6cz58w7h7hg66avyvrxyc9"; depends=[AnnotationDbi]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.4.1"; sha256="16p3zsx6sr466xzf0yd667an21br21n13agacsysf9g1vw4gc7cx"; depends=[AnnotationDbi]; };
rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; };
rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; };
ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; };
@ -872,6 +891,8 @@ in with self; {
rnu34_db = derive2 { name="rnu34.db"; version="3.2.3"; sha256="0ahridq75rmjyaivmlhn428wg712zv3003cbzzrajm9w6nibbfgk"; depends=[AnnotationDbi org_Rn_eg_db]; };
rnu34cdf = derive2 { name="rnu34cdf"; version="2.18.0"; sha256="1snb89530zxdbsfs1vgw30b1wdc5sdr1q46bmvz5m9g57gyficr0"; depends=[AnnotationDbi]; };
rnu34probe = derive2 { name="rnu34probe"; version="2.18.0"; sha256="1rzjha1v453fxiwqs2zgwcbrvz6w96biz2jny0hrh5s86d5f6xpb"; depends=[AnnotationDbi]; };
rta10probeset_db = derive2 { name="rta10probeset.db"; version="8.5.0"; sha256="039klpv3v3npb9i9pw4sjh2jwyv8ffk83360h41lxmmy17fdzlmh"; depends=[AnnotationDbi org_Rn_eg_db]; };
rta10transcriptcluster_db = derive2 { name="rta10transcriptcluster.db"; version="8.5.0"; sha256="0q0szasa6c1klhhzdp08sv598m7njf1xql9h710xajbyksq0accy"; depends=[AnnotationDbi org_Rn_eg_db]; };
rtu34_db = derive2 { name="rtu34.db"; version="3.2.3"; sha256="119l36gbzdi52na2lkjbpb5r2d9pp5rz2zpzfj7isw07an6h8wmh"; depends=[AnnotationDbi org_Rn_eg_db]; };
rtu34cdf = derive2 { name="rtu34cdf"; version="2.18.0"; sha256="10f5wnvk820c8brl2qqs7mv6jcn1v6pmz680kvlpyz9s2sz16936"; depends=[AnnotationDbi]; };
rtu34probe = derive2 { name="rtu34probe"; version="2.18.0"; sha256="0mcp9lmc65j3ds73gyak72pkshnx6km0d2cm324yaxlp9bqzfchw"; depends=[AnnotationDbi]; };
@ -898,8 +919,8 @@ in with self; {
vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; };
wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; };
wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.3.0"; sha256="00g3cq605zgzq11lrc8fyp5qyqds1rwq3qzbpg82ja29ggbnkr6f"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.3.0"; sha256="1bxz80rg1kf9hawmbrawiswz8r8yb29ck7l8wwivi4n5cg3mfbkw"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.4.1"; sha256="0r76ck6b2zkf38z59n9m3frc2d6v27frrbryvyk6lv4bnnwa1p2n"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.4.1"; sha256="0953cf597hxd2h28p7bqrv5xxs96y3bxr4x1hp8bm1v0l8l37d13"; depends=[AnnotationDbi]; };
xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; };
xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; };
xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; };
@ -911,7 +932,7 @@ in with self; {
ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; };
ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; };
ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.3.0"; sha256="0dpdqn22m5l78ck5shwpiw4qza63sddckzdq85fx4xskmnr0qhr2"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.4.1"; sha256="0d9p474891jshxynmwa63xg7kb01s6vb1dll3hns9ps0bpm6d8r3"; depends=[AnnotationDbi]; };
yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; };
yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; };
yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; };
@ -920,7 +941,7 @@ in with self; {
ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; };
ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; };
zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.3.0"; sha256="1x0pzppwlm2ad8b2amg3i4jcpkadr2x26nqdhjqyjag0kq5w72zl"; depends=[AnnotationDbi]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.4.1"; sha256="12a1qk7wjjsclrj2nbf02hwk9pakzkgzgy4l2893bnwyf0c30ffb"; depends=[AnnotationDbi]; };
zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; };
zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; };
}

595
pkgs/development/r-modules/bioc-experiment-packages.nix
View File

@ -4,299 +4,306 @@
# Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix
{ self, derive }:
let derive2 = derive { rVersion = "3.3"; };
let derive2 = derive { rVersion = "3.4"; };
in with self; {
ABAData = derive2 { name="ABAData"; version="1.2.2"; sha256="0wp44a5i8qdg2jnxg1fvc9i79m6zdcr0027cp4fha11l1syj6dh7"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.14.0"; sha256="07prs6q7qahv763ldwf9msyglbs0yrxpr0l95aykvflyyzlkdj04"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.12.0"; sha256="1h4747m67sc7d6hif42dv62y7ffzv92rili95ajp208i7j4451jp"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.8.0"; sha256="0jkzvn9kg2laxng4gkgpx7x30zx542y1z0ywvidy8w7xa99d1c6q"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.8.0"; sha256="08r8cr8gddbsl0xgbvm9vrdazzg874vkglvy3ji5y88nph9gli5x"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.6.0"; sha256="0wn61kslpxp50fih4hrciig5hf0ydafabf6lzn8nlpamkr54gcw8"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.10.0"; sha256="1qp649gli32h6xffw1sfjsfpxmm3wfn870sx6sgfnyxkyhr4fa4y"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.10.0"; sha256="1id05rc0q2nlazc4ndjmd8blwzd1xhk06rwc2sv755v0amprn4iy"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.10.0"; sha256="0pqm0v6frq0xjkdjbxgyrcipjkyp47r652gn20wc0y5kpkqs0pqq"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.12.0"; sha256="04ih81msr17zwl00n36xx2l180d6q6q4cbrr2mdwr6ppfxq60g3w"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.0.2"; sha256="0n28m8x6kdkgqrzx468zrssy3a5qla294xs6mqxi5ghsppdasxwh"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.2.2"; sha256="032f48jq7qm94g45lv1kabjc6362xfhr63dr0spsh17vhipbj06n"; depends=[]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.10.0"; sha256="026fgqgb5b7s09zjb93qpvn9lashvcmw4dabqi80vmcslw1qynrm"; depends=[beadarray GEOquery limma]; };
CCl4 = derive2 { name="CCl4"; version="1.9.0"; sha256="1byiayjf1jbqj1xfarblga5523gqnivr0m14pd1flrmx4d0z22kb"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.12.0"; sha256="1ni36n8cadlwybg9crnw1kq6xp7l0l8y6mwnjqlqzykxn5x16w08"; depends=[affy Biobase]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.8.0"; sha256="1wi4mg9q3kg0rglkz2i630y2w8p2hk35k013iav6r7k02n9pb4xz"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.0.0"; sha256="12q519wik54dyw2svviib04w0z5c884iiskk0v7qyhx9kydkmkfc"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.8.0"; sha256="00zhw6iyak3z38s1xgh3mdd1kb166r0vm0s5np4xkp93pg6bcj7i"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.8.2"; sha256="0x09csirjgsww38r339cpcg446xx4c5nfsifvfyvzdxxdfjq42xa"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="0.106.0"; sha256="1lfhb82hkv4ylgwdzpmlsk4rk66ingp3p2zd7c43w6rawald3s2y"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.4.0"; sha256="042456sy3bikv66i2j6zidk9s9bjgd2hl481jy2jzcjg9jqzkrvr"; depends=[Cardinal]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="1.10.0"; sha256="1i4ifwiim97ap0n7ccyy3w0yh8bf22bm1laif0vb1y8cibj5nwnc"; depends=[BiocGenerics GenomicRanges]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.10.0"; sha256="1v0h5k7z3hvwkf56xx42s8y1dx4bmwxcnl16q0pmfnakimvbm1bc"; depends=[bigmemory]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.10.0"; sha256="0vyvzdr6iznp82njz72vw7c5amw7pgiswv7a3yv4iiz6ilcp1lb2"; depends=[affy hexbin limma qvalue statmod]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.8.0"; sha256="1b8x7g8vzd6dmfpg5rih41bpz1srp0ykwkiz6fvwqxcic3wwjhyr"; depends=[]; };
CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.8.0"; sha256="1f7g07iks077b5wis4p960kf1smwwcqv8hbwqqkix5gan5hwy09g"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.4.0"; sha256="1z4bcakmi84jgiz1c46g2v6yqmxdzy9n02adhfzbh8jgzh2apq5h"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.0.1"; sha256="078dcj8cjj7iqjc5i6q1d7bi1frvix8f8hhmb4x20670fynda3pr"; depends=[knitr MSnbase]; };
DLBCL = derive2 { name="DLBCL"; version="1.12.0"; sha256="04rg3c1mh5kl0dkm3wyxv5izm6910j6zin8lw21dbgnvnf7v4fg3"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="1.8.2"; sha256="0pl3wj2nvjhp84cvvh2yqdqqsa4b61wyqmihw8xg4qkh78dnizqk"; depends=[GenomicRanges]; };
DREAM4 = derive2 { name="DREAM4"; version="1.8.0"; sha256="1qnq24lrpwrlcn3x1f54mb6j3qpa6rjcxn1r326dabryphg2j27d"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.8.0"; sha256="0x8is94i2svw9hlrhypkc0b9fa5jdpnr8vbk0iywdg8fp3a2yis0"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.4.2"; sha256="11v1f4nh2r1p29dszwgq451l5cfhppylggg578xfn0i20dmwfrry"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.10.0"; sha256="0j22cb94h0sz17jdvfcc6ifig738qkx8rhlhyps42vjinslzh317"; depends=[EBImage]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.8.0"; sha256="0qzm3zlsxhh3bq98wbwar1lmrdkjigxbw249l4l6fs6rkr89fjh7"; depends=[]; };
DvDdata = derive2 { name="DvDdata"; version="1.8.0"; sha256="0mfgcwjqmpbi0bqy0xav8bd6w5pasx10xmz3sk5qx17iw873n6j7"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.0.1"; sha256="12294jrirm23sch7b84ylvsxg7njw9gj5h9spjh0s3mzp0iak3ac"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="1.2.2"; sha256="1invnncdcqxv8iz0asj9nkgxrvjannqfhgmv23w2p7hpvnhfc18h"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.10.0"; sha256="1i9cm0way8g856h90rcgq6xh0w3qkv4cq8ac0k7b2gpnsa342m6w"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.8.0"; sha256="1yvk3px2dcnld9maizb9l5xd82pr7y9j652gknn20kl6d70rqz90"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.0.0"; sha256="0fd7yfzdyr7lrixaxji14012z2kqlyx5g9236r9hi5v1fcrxgi1v"; depends=[]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.8.0"; sha256="0yk4aqi5j94m1n2d0ablmcc5czk44nyimi5wfagyb51187hvad8s"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.8.0"; sha256="11lfcbbmz5yk12j5yvn4y8ylf62i98h6y3b0mkd63lyswfkzknq9"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.10.0"; sha256="1i3f459rd7fnkqqpdshzxkilcm3m2mivw8hva3y7gb6734gpllyy"; depends=[minfi]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.0.0"; sha256="0rq9b4xdvq6v1brjvn7qhin3s8jaakc4s5va87qnnr6hh41zlj2a"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.8.0"; sha256="13qr6a95vwbx3ilkbh2pbim6yb9hmz0f3gn2bkj3a3hgm1skbh5c"; depends=[minfi]; };
FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.8.0"; sha256="07pdy0fpprs8ri1vrg3z97zdrifrgh9js25g2imb7f84fnzcl1gj"; depends=[IRanges rtracklayer]; };
GGdata = derive2 { name="GGdata"; version="1.10.0"; sha256="14y0vmzhf3afz1q3ydrl2pwdn42x2j58rmyj2rbidcj1l2dqg4gd"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="0.106.0"; sha256="028f0xfnmq5rn8z1q12rmd4wmcg4r7vncxkjbb589d5v7d7p73b0"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.0.0"; sha256="1j9gh4glqw3ip442m4rp2i174l9ql9kbxd0slm7d9qgfkpggzyki"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.8.0"; sha256="17azis177nwq34pn55mvz4clq32w2qn9m9rfbd2j99y7m0gcc63h"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.10.0"; sha256="0xl7idhril2jfas34g7nr7b6qvnglkg6q7q9xh1damk166dpb49g"; depends=[GWASTools]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.0.2"; sha256="1rxkg8wxpkv0rlldyfa01f8fvph35gy7awpsnw58qfj92bcsmkgg"; depends=[]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.12.0"; sha256="0701nvh83q3r1mkzl6ywb91zhnmwshmsnl22zb2dhikbn1j4rzbc"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.10.0"; sha256="1rpvpgirbwmyc3ybh2z7h6z6a0bw4jfcm60c1kamnvj44nk9f32j"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.12.0"; sha256="073sb84gy804ipsdcrljxvizxp637zi9lxzc8zimxk91l35mcrnc"; depends=[]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.106.2"; sha256="1lc0q6q2601z53fyxzfjzl4yg14pl0rz8j8jqzjjvb3c29an7wbb"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.0.2"; sha256="1yd9np9diir65cndk2n8cdfilnxycl0fhd9kzdz8fh37inrfvli2"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.106.0"; sha256="1bh9ncz49gp25nj5cy4yr577lnzh6byrcps5aic71052xqw00a3a"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.8.0"; sha256="0mmvxi6ippljm2c1h7grhlr0qacyvq63w0mnm9n2g6bjkmwzmn0w"; depends=[]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.8.0"; sha256="0s0ynp1mc60ikhn20phw37happbdxi1gfgkikj51z0aryrf489wd"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
IHW = derive2 { name="IHW"; version="0.99.14"; sha256="1qh81nhvqg5pfxvd6ap7rlksbqk6wb041w1ba1s36gfrjr1ff1j0"; depends=[BiocGenerics fdrtool lpsymphony slam]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.0.2"; sha256="0whaa0gdqx5c5l8ra6yjl9dx9nkg32fs16w095djk7jn9f140211"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.10.0"; sha256="1l31w7fgaizdglp8khnlzzpz1gwxmhzmpgfbkpnvl7wsdkfa20pn"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.8.0"; sha256="1x8c897bj5bq9ifw4pyvq36rk6sqyqinr66hhxm0gcj0grhi8kpv"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.10.0"; sha256="191a6vyd35ia7dcx7x9vcgizapnpzdyhcqygw4yhsf0z3pr5iv9b"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.14.0"; sha256="13p736wxx77qc4dg2bxl2crf193yj5jxx9p6m5mblqbrgvnr4g5g"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.8.0"; sha256="1wspjfij2h0x5i2lff0j24rx9v3ivp6s9plv61zrj34sbwibwwws"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.0.0"; sha256="0i29a9qa68zxgvgmfx0wyhnbangvbqr2mbdgqh65a56mnjk2ay2q"; depends=[]; };
JctSeqData = derive2 { name="JctSeqData"; version="1.2.2"; sha256="17ld0vwk9dqyy6a6n386mzklx05azcwcfwbxrbm07z0d7f2fc73n"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.106.0"; sha256="07pffi3ajklina1w35dn1dgj522djymp07dyillxyhm21g64qcn5"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.10.0"; sha256="0c7gdlxnwxlcfvydq93p9zklggk3cgrspshhjzzsmavm1dk917kk"; depends=[Biobase BiocGenerics]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.10.0"; sha256="1fqhs3kmxf3hjld6hmi1grn8j0a4z3s4wxy8nhmwc36c7asmcyhk"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.4.2"; sha256="0kcwicjx327lpnxq1lcmxy061r6cxfz8q2csrxp74dddkyvljmr2"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.8.0"; sha256="0fwkqyh0zhihpp2wn98b0fk23cmh9q2xvxidskia618p69vkyvn3"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.10.0"; sha256="0svawwn2xzgsd8a9k5ml5g8yll70nwpryfsqd98azrmy5jmnpmb4"; depends=[Rsamtools]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.10.0"; sha256="1spiav4m5zfzkbbig0qf6clvzi6gin690gicl6pvfvnwxw9hvc3s"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.10.0"; sha256="07c6by6j3cc2pvj59vsaphnaccks6asgdy7rap05b18v3cv0d85x"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.10.0"; sha256="0z7n1pjrx2wglxpwv8h03knff5ddhcka9jxi7y14jpmjh7k9qsdc"; depends=[Biobase lumi]; };
MEALData = derive2 { name="MEALData"; version="1.2.0"; sha256="075b5pm1xz7xm35lcbqghlhrb1srfkbdkm3f5h24cbq3qjdlnyyf"; depends=[]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.8.0"; sha256="0yvrr3h57vfxiv2g1n6hiib15i6rl5zw73lic9aaihhz8vzq3hiq"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.10.0"; sha256="1r7cr1fn2x372d2vx9rxz5dd53zc6256ii2laq53i9g558c4368q"; depends=[]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.8.0"; sha256="04065hwj0ncczk4gv7zq9szp79xd90mp15a60rw8vayrh07cg563"; depends=[]; };
MSBdata = derive2 { name="MSBdata"; version="0.10.2"; sha256="1g4ai2vrbl3dvk53acwsdqy47lh2i6d9fmghclfb8jxnh20ab34j"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.106.0"; sha256="1hsky35vancvwlsqky0d5liz5kfq6fhyqkvw243gjz4rakw090mh"; depends=[]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.4.2"; sha256="1x42fhaaazcwzbx7s47ffzcpga0dg39wyy64956fm42ygbvykzm6"; depends=[MethylAid]; };
Mulder2012 = derive2 { name="Mulder2012"; version="0.12.0"; sha256="141ibn42qnv0dzzhbqgarzcvcbsqz4ckf0k4fpcgms23ky1js5s1"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.8.0"; sha256="0v4v0z09rh31si29sm8bwjmc3lcjpqnpsx07wyir6kqv5kils7mb"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="0.106.0"; sha256="0a9kx8d0aqv526kk26060afl5mydj8xdkh3vv1r1v820niqgyd32"; depends=[]; };
Neve2006 = derive2 { name="Neve2006"; version="0.10.0"; sha256="1z3hg18my8sv8q9x0k4kpcq75fm73id1ak30zq1rqrscdvysk2wn"; depends=[annotate Biobase hgu133a_db]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.0.2"; sha256="15pdm6y6gaia5yv4xg1yjmyqwhak49fzl5v9y0mb2gsn6nb2ajs0"; depends=[Chicago]; };
PGPC = derive2 { name="PGPC"; version="1.0.2"; sha256="0q6s3km9d8sjzhbz1yxyadcnfq3gc8aav9hgp886ri7jcm5ddh14"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.12.0"; sha256="0q4857a0i0a77ff139j57m6i5p71hg9gz24ln97hc4zrxcp3qbh6"; depends=[affy annotate Biobase gahgu133plus2_db gahgu133plus2cdf PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.6.0"; sha256="0has8xd86qh5042c5kx63py8b2bqsxy1xmn12gr7wv0r1wlkzylh"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.6.0"; sha256="1l0806ihhba3rl6ck1xrb2jqx77jsl4c2ksph5a0dc8zccsdln94"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.6.0"; sha256="1j55797xdw1bwy0z0md4swyn87lki5y1qcnp7mcxfdvvq4371vm4"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.0.2"; sha256="0h867v5vrcwaibybqf8przk4d2l286bwbc0rg1863kdq63qhxpls"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.8.0"; sha256="0wxixfjdskcqpy6nr2bfjggjd40jlzq31y50k5x0ccbhkkf60lrv"; depends=[]; };
ProData = derive2 { name="ProData"; version="1.10.0"; sha256="1fkh3arikrwzllqn83x5v71b5x0nm31fy1xr2sldln1qif583mcn"; depends=[Biobase]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.2.0"; sha256="13d8zwgwv22nhi96yypk87m35yhf256aslxhx682awi40lacljr1"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.2.0"; sha256="0v5j0nfy0k0jkgd2mxc7ya0bfagcrl7ck72crz3959bh70vglvdg"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.0.2"; sha256="1q99mhlk08x9y68pyjv9wjrdvg58qzvfsxg1alrilyh243zr2nsn"; depends=[]; };
RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.8.0"; sha256="1i5mwj837ppmildrbsq38iqbmhgphbz18vin7qj03axxg29lkwxm"; depends=[RIPSeeker]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.10.0"; sha256="113x5dq02krdv3i1vlziqiwvvpnwg7mmmarsysjnjad539gklfvy"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.10.0"; sha256="0b3gfhm5b4s044j78lq81jj3pq7w7ycxh466xnlxilaqyw7g0ydl"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.10.0"; sha256="016wrjr539an4hygb53schaypbsivnk6asrwywhjlxb0cjwszwvy"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="0.106.0"; sha256="08knas04hnhm54ya6nqhzv86q12gfjfynjqpy3d63s13r25pn4xk"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.0.2"; sha256="0yq6yig0xx0lzcqz1adb78swmy1jwb18hqp1x1xvnqf7c9jffv2a"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.0.2"; sha256="0mkwa1w6qzp1kzjg8y0vs09vq5yy0alf5v56cg64qg83yjb2153l"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.0.2"; sha256="0h95prind9ydyc2yj9m5ay6m7jx8fi3ay42j37px3gb0l4zmb1ph"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.2.2"; sha256="0dyr95s50cgw5xczczlaiba1hbc6x4gn03bq3zffcss3kwwzrhqy"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.0.2"; sha256="031g8pllcyyn7ayd2qy3yyq3ny39snnk86r6dy44n53a7wixvaap"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.0.2"; sha256="1nzyl6ny4vvgpxy891icy6smwi24li67k4nwzm7vwkbxq25lkgvy"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.0.2"; sha256="16yqlr2ml4hg6kz5740nxl10jkgs4d3mvm4gj2lb8qg3mji0xw77"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.2.2"; sha256="0mdj5aqxrhpwcxp2i6m9xxp808v73b3gr59ymnfsvh8pyf6929p8"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.2.2"; sha256="1wsvyrs738qz55x41byhsqrnxp3w18qibxwmmsymkgx065rlnn7p"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.106.0"; sha256="065vc1dhka15zzlpl84j4y619wifn7gh31i3yjqds0bgkzj5ppz8"; depends=[Biobase]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.10.2"; sha256="07snpj844hbr1g9ciq06s75w6pcjr4j70ssg85wr3igas1zmkz85"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.4.0"; sha256="0k3k116ncw3l8fjkilbgydpp3wwj9341f7zmm67wv3mr06s43hdl"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.4.0"; sha256="0jmyxbdw7jj16d9p2p5kf5bc1jgdcq4w7nfca2bdsmn7q3lyq0yp"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.4.0"; sha256="00rj7kab8n32hxbw5682xxzrwrc91hdq1068z9bcvb52z0bsiyb2"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.4.0"; sha256="1513z6xka9gx3gmykc40p0xh33i4jbpw8j4l6h0bs6h25fsarqhc"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.4.0"; sha256="1f16sb6mazcs184wrpwkgbz6zkbk6k79pawn7ip1rsjma9p1sgqp"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.4.2"; sha256="127hc0wkpjssmnwqj4zzlbv7glznsc5g3qfsmx4slzf983i3hdbi"; depends=[edgeR]; };
RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.10.0"; sha256="0ci771xdjyjxidkra0lcbpnnqghbk9ycvllpxla3lw5h608wgb4m"; depends=[easyRNASeq]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.4.0"; sha256="0jpx7m38gl38r54b0652rxvbma61gzmki28j373g3ns4f4xxf7ph"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.18.0"; sha256="11bvbzxcvg5s3f9cl44cpwnb2php8qkfmlvzpw829wb6k2pk5ha9"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.8.0"; sha256="0qy6rwsggd4cyvci9ng1l8kjpcv79hhqndvv6zpwnvh7ng9f0x5d"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.2.2"; sha256="0r4kanaq96xppyhjy2hnss42ckn8mac9gwpyak64ywwvq30wl12m"; depends=[]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.4.0"; sha256="0lwdr0zpq3m0fqwijfgnm4jky8wg5pakrlpfgdhff01i9x4dh8bb"; depends=[]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.0.2"; sha256="0vpa4a43h39hl8jx465kbypird4bh2ry5dyz3pyrf483j2wlmwjd"; depends=[]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.10.0"; sha256="1f2m9rdfczlsn4nvyj5m5qhy1zg08y5ajblqc4r2r6gh8y8vpqyi"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.8.2"; sha256="0kdngwd3b9vb698rpfmbirbi6wa70p3sp41z2q92fjlvv9lmv7b4"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.14.0"; sha256="1wrfz7sl1gdqpps54k8dy2r5444jajbkg66br6pjf78s4qh555sg"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.12.0"; sha256="0r9cknnazvp8rl7a0aynh5lpb1lq69d3s8jz84wafj2mdddr3m46"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.8.0"; sha256="1950l0fwf23p62v0sgh0mjyisa9cnf0wjplx4x368l30jxgx8ag8"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.8.0"; sha256="18hzf0sz089dpay1c4abp1wwi680gbp1cnz32rm40fgadaxv60ga"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.106.0"; sha256="0j87h53l2by6rx0r452s3vyf1987p23zgdybgyblwhdjgiddizc0"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.106.0"; sha256="1207h52ccs7rv4dpp87xmsdgyl841zxrnzg4wh55v8kcqnk08ly9"; depends=[Biobase]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.8.0"; sha256="1mb3b14qa4b0cbzxlkn4c5rihp1niz98qdd3kmmj9w3q0fllymxa"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.10.0"; sha256="1vyphhfz6lnyh19qid7m5d1j8lmwzda89bq58r5anz2dk2m7rg2s"; depends=[TargetSearch]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.2.2"; sha256="08i0qnp7fhpg1y5xdckrwxh2mzyxrv2s44z5vs1ldr2wlx4y244p"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.4.0"; sha256="07kh15dyqhb867y93g3ymcr346l69p30sikfm30dvhq16ckrg9jm"; depends=[]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.10.0"; sha256="08zhxkg5h1g13l3p17idzcyz34qbpr6yvvl8qzkfgnm0ipcd35dv"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
affycompData = derive2 { name="affycompData"; version="1.10.0"; sha256="12dmv99m7iy0wrzsk9h2j8ibby0shfxlyk02kk9312rlnyf7qb6g"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.20.0"; sha256="1wg3kxvlzqwf40wrkz69szrcyv4fr0fml42qqfcw7qy1m3skp1hi"; depends=[affy]; };
airway = derive2 { name="airway"; version="0.106.2"; sha256="1yidngcxv2sma29l5k9zpjhfbawk2wb62w7ik0gbjxw9sdacpk0v"; depends=[SummarizedExperiment]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.8.0"; sha256="07kccp1qhhmskpymvllz9l5a4r1ml8wzww0ik82653pibsjr5zy7"; depends=[Biobase]; };
bcellViper = derive2 { name="bcellViper"; version="1.8.0"; sha256="05bvnx7ji27r115ih4k00pqb2zvfg9cj6hsr03yszp7cmhdjw752"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.10.0"; sha256="1gvq1f95yy9x8nx5hj20c884xcl6zqhsmc39pdzhmdgclfr07p6i"; depends=[beadarray Biobase]; };
beta7 = derive2 { name="beta7"; version="1.10.0"; sha256="1vry0dbwjvzynb9bgxr8vnpaqby6kb8am2fc230hswqmwm6yjgkq"; depends=[marray]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.10.0"; sha256="06f8gx1gmkn520ca17z5a03j9f5f4bz00ggy51ygl9zlb7ib56si"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="0.106.0"; sha256="1d9x37wdnhcx6q5qipf4y74pr8585wwlz7xdq7dmfcrghsgd23qi"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.10.0"; sha256="1ry4issbkfk761sc1mjhg46hk7j5yb4kidvpgh9nnid807zyqrfp"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.10.0"; sha256="1wml4q5m83ak1zagpjlbwy7fzap7dli0rnpjanyk3dqrl79pp77c"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.10.0"; sha256="0iyb8dvz4l7rvaam2xnyvgmg4n5zak5w6jhzqyc1dy29hhy55rjv"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.10.0"; sha256="04av31c737ggq268rc84z89hhfv3pqrxkjlbbwhrl2qmcc0hh9fl"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.10.0"; sha256="1cdx855ai6qrzq49l57x9nl58jpixnpp97cmfzys8n7kb2dn963h"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.10.0"; sha256="0q1ann7mhgxlyikb4nprzhy2mm6g8fgfbb2kyczi7sshrh6h4qba"; depends=[]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.10.0"; sha256="1r6p4ysr6ahwlwi0hhla6fb8cmnmgbssbqhrizqsid1f7di77n6b"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.10.0"; sha256="196bbxl1p31g9kpm448642a0gx8dyng8r98gn53pxmdpp2hq5yxl"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.8.0"; sha256="0pnym9c0pipag2kr7j6b7c3dhhhav7z508avv4aj6f4wcagb4yrp"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.10.0"; sha256="0388634p3j33vz8dw5i2j2y3n9w9h2diw3qsnqcar4w7d97grd9v"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.10.0"; sha256="04h212d5j963xm5l1hpdb901njfrfkp1qdy12ndlrph010kpk6mv"; depends=[affy Biobase Ringo topGO]; };
ceu1kg = derive2 { name="ceu1kg"; version="0.10.0"; sha256="05dvfjpf93cl8g1caypzk84k73z6vmam91x3rh16r1fw4i3sj2i7"; depends=[Biobase GGBase GGtools]; };
ceu1kgv = derive2 { name="ceu1kgv"; version="0.14.0"; sha256="0ah88kr9rc6g4n7d800dxaarpliy443zpd7innbmrm02xq4yjn6g"; depends=[Biobase GGBase]; };
ceuhm3 = derive2 { name="ceuhm3"; version="0.10.0"; sha256="07pzhj9b4b4zpcfg8fjlzh53yr6pzwnfv7m7cks55x47l8bpv1d8"; depends=[Biobase GGBase GGtools]; };
cgdv17 = derive2 { name="cgdv17"; version="0.10.0"; sha256="0rjx8jn1m9h5p982c336bza9liyv5wymgigbr7dar91y89a0pmpg"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
charmData = derive2 { name="charmData"; version="1.8.0"; sha256="0b8ka779s0p0byjn8vxbygwbr2w11g5mflgzyi4qh4dvjh84sri7"; depends=[charm pd_charm_hg18_example]; };
cheung2010 = derive2 { name="cheung2010"; version="0.10.0"; sha256="1ibwajsyggi14vscb27kr3zg8vnqrswsiphv5cdsfnapna9n5r5k"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="1.8.0"; sha256="1nq7a4kf4nybwm9k2szccn5678agfc4zy38375f44ca8b40481x9"; depends=[BiocGenerics GenomicRanges IRanges]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.8.0"; sha256="17kfdidwvj02kcf4pvkypmx7zhyl1dafxw1j32vzvb1rm50m770b"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.14.0"; sha256="1zsk2p0q18l2nfbjgyp7h88ci3rqavnx18vkvgzp1sd4zfc2q7m4"; depends=[Biobase]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.8.0"; sha256="0dvr1qzjknjaq4wicihdzdlk2scj43bx89p5vshvnx5238pc0ya7"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="1.4.0"; sha256="0nm87q0x7jp2xzmw4lc3q4xa77nkjyfjzx7xnj72d9q1ph79rnyd"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.4.0"; sha256="0xw2fda03sfh9x8qdqvp0r5g06jawidjvw2139kgn3lkh000mffb"; depends=[BiocGenerics nlme]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.10.0"; sha256="1wgf366krp6zv950giw1s5am9wi54zyvh5qkyn5ff85s6nshx7xf"; depends=[affy BiocGenerics]; };
davidTiling = derive2 { name="davidTiling"; version="1.12.0"; sha256="0hw2im7in8h49w41k528lwzb1jvdj1q1pvdlsf5n3h4dm8j2yccv"; depends=[Biobase GO_db tilingArray]; };
derfinderData = derive2 { name="derfinderData"; version="0.106.2"; sha256="0drjk0gazg071z794d6hp88rgvl1913cchrbi23gkplrfvpqdka0"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.0.2"; sha256="06vc1mgyq9bzx0bkadzzmh9qjfjpwi1hz7cjnzh78afkyn6xsm25"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.4.0"; sha256="0rjjh8p58wcpvyliixnrjys4s6r6kriinrk3h0vjr1f7ljb2zci5"; depends=[Biobase viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.10.0"; sha256="05vsyp4xmpi3374xlama9bi720hns0c0lfl2094pn720mwlzm784"; depends=[Biobase]; };
dsQTL = derive2 { name="dsQTL"; version="0.10.0"; sha256="1jkg3j8gclm7c8dc2620dvy91z0j7p02nswb4v52p377g3v90pw1"; depends=[Biobase GGBase SummarizedExperiment]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.12.0"; sha256="1iqhbzx5dggch34h87g189ldppv3axjmi60vi5cmfl0ngwh7gkyv"; depends=[GEOquery marray]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.12.0"; sha256="1g0diwj1ihqw10rfgw2rp7vfnjrknkgmqm9l5snxcsszkqn11ipl"; depends=[affy ecolicdf]; };
encoDnaseI = derive2 { name="encoDnaseI"; version="0.10.0"; sha256="1ka2m4i6f6wccfrkjzcjgygxmpkf9xfyh1cykzh9zrjc3305pyjd"; depends=[Biobase GGBase GGtools lattice]; };
estrogen = derive2 { name="estrogen"; version="1.18.0"; sha256="0kimcb33jsanysl60dhmyhz4201f33ni8ap3wk4ikplf3s619l8j"; depends=[affy]; };
etec16s = derive2 { name="etec16s"; version="1.0.0"; sha256="07ngasmbqiipkxy23kdpjbi72n3mjfk4wkad52sli48s3hh2xssa"; depends=[Biobase metagenomeSeq]; };
faahKO = derive2 { name="faahKO"; version="1.12.0"; sha256="1sx6jdkv8i1d4lpl4kv2d3c0gk2cycs0gzykngyvz8yap911i82y"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.10.0"; sha256="0m51rnsgh4wrq69rpc1i4cn69jvab4y0ib4sr6kpdh8mqrb17n0k"; depends=[Biobase]; };
facopy_annot = derive2 { name="facopy.annot"; version="0.106.0"; sha256="1bfsnqlcb8lq351anaq1bc2hgzpdsavzpsh81sr7pq0kpinkn35i"; depends=[]; };
facsDorit = derive2 { name="facsDorit"; version="1.14.0"; sha256="0am46a770gvm0qjb0ah2gbm28yjazg2dfrdagywvyiaadj68krrk"; depends=[prada]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.10.0"; sha256="14mfsjgqxrmcf8y9n47yix9qgbi437636978nd2gxggahhvx45z8"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.14.0"; sha256="0h6dj4ypwvxi9137mzpzsymw0dkgral0d3fvh8via8l0vkzhxq81"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="0.106.2"; sha256="0x43py9445w5hw4z9s2br7k2lqlr988bchaw7qjll6qhm5xrbip0"; depends=[SummarizedExperiment]; };
flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.8.0"; sha256="02dlkyl9zxqy4cns9mrgf98zspzc5ks1qajbg8vy4fnrphykbp0v"; depends=[flowCore]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.8.0"; sha256="063wq1nv9f3z014qhcq8a060q5n1yxc99knh12vd1kl8blbanjvn"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.8.0"; sha256="1mwyx3xyz82xg9ymyqsiy2iqpcfgw471pmbfd489y15rb7jdl2rh"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.0.2"; sha256="0j1zvdm7g3f0m8y58izbrkmpsjxi0sx4h24qlbmglj2xhhh34b9i"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.10.0"; sha256="17nr1kfn2r5zhwd7sj01iv7wv3rw8bj3dpfm9x4bsg2pby93i2wl"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.10.0"; sha256="1aaxy1iayi10k7pj4s3jfx7dss929ll11zvps1xcbiz1wfhk9163"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.12.0"; sha256="14a2kvg95zvq4ij8adqihr7ajckgzg76y3r1c7bbyd4b46h96l1x"; depends=[]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.10.0"; sha256="139ig58xnds081q8azkkzpp1mb22xx9cz0m38lpw0xl69ny1h8mv"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.8.0"; sha256="10ynnx2r8snnffhwnj620z7blfy4af8rm1il6qy4g7dgs0cx7a4l"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.4.2"; sha256="1zl7gg144fs7zfycsmq5492sm1bqy7l527xbc2zj04schd9wsan2"; depends=[]; };
geuvPack = derive2 { name="geuvPack"; version="1.4.0"; sha256="1jplp7fgcjayvxzrzxxgdwdb89k5jw4xflbjb71mrai11p8za546"; depends=[SummarizedExperiment]; };
geuvStore = derive2 { name="geuvStore"; version="1.4.2"; sha256="0svfj6axbfyyhwx1v8dpmla9a8f31pq3psqd72zkpgqh25q7zyrn"; depends=[BatchJobs BiocGenerics GenomicRanges gQTLBase]; };
geuvStore2 = derive2 { name="geuvStore2"; version="1.2.2"; sha256="0dhdf2a10la9vm5vcvdxrzh50va4343h57vvc8711wbris0hqfcr"; depends=[BatchJobs GenomicRanges gQTLBase]; };
golubEsets = derive2 { name="golubEsets"; version="1.14.0"; sha256="1a1ccsx7jfcgpjmhrdpnysrsa3b7r807vkgsrkri11pidf79kbc2"; depends=[Biobase]; };
grndata = derive2 { name="grndata"; version="1.4.2"; sha256="0ivddlxc2xd6ncwignrxkp2cy81k17wav42g8m0pjb7ck6qaak6l"; depends=[]; };
gskb = derive2 { name="gskb"; version="1.3.0"; sha256="16yisw86zhvanigcq9zlxk3wsqdln8cwslija5s8mq68srffc3q4"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="1.106.0"; sha256="00m3l1wwvff3w3nxdbk7sn22i7p2ikdr1mrd5x6f7jbihzii5zdq"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.14.0"; sha256="1rpglhfy3q1m5l54wjir1nsyzqxpp1h1112gyvdxkxdv4jsxfmd2"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.14.0"; sha256="1lq1na4v1v2pd96nn59kppiaga9w8ib85qndbv5id0q8fh11xmsf"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.14.0"; sha256="1b7pyp4nqp7qkjv5zjvn8q3ha7jn8fk410y50j9vhl147jwfir98"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.14.0"; sha256="1cnkvc2miv4gw3gqg0avjdi19vhrpa7b24wm9fdz7ynasi164qqa"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.14.0"; sha256="0yylk76s1n9n9yj04726pzs9fx10gng146s4zpbpb2qk14kj0zfr"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.14.0"; sha256="0d06wzcrawssamh48ncvys1v0r1iqfg88vf8nx9hbjlyi8a8lw33"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.10.0"; sha256="0rpbv423fp7scgkdws6s467a97mv2g4ami3zx0x8p5786ywiv42y"; depends=[Biobase Biostrings IRanges]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.10.0"; sha256="1hmpvgapf75wiwvc4c68k1wglhg04zka51m3fyzsbqqg23g8a8zv"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.10.0"; sha256="1zckhwi7wjns9plp3r7w5v0lv3syydlf0akzgarl5fz28nbjxy42"; depends=[]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.10.0"; sha256="02kacr0qkvvh6bx69pmkp6n1y1q6jvizf8dqcdp72bxzav9m2pgc"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.12.0"; sha256="056p5lmqmady3yaif7flvd266i3a6b1z8vycjfq44zxd4dccdm8m"; depends=[]; };
hmyriB36 = derive2 { name="hmyriB36"; version="1.8.0"; sha256="1v1gbfg9sqpxlkk4qjrdh09yggqcq0xl32f845iiaxfizsj3xlh0"; depends=[Biobase GGBase]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.12.0"; sha256="1l2q09i3pl49dp2wksmj8dh81lvly09ldm8ixzz89wz5f39d2bff"; depends=[Biobase hgu133plus2_db]; };
ind1KG = derive2 { name="ind1KG"; version="0.9.0"; sha256="02f25djy7zxh7d88v00jhpr1f5wa2ijskg5w9i90r2llwssjxx97"; depends=[chopsticks]; };
iontreeData = derive2 { name="iontreeData"; version="1.8.0"; sha256="1xmbs8vicz7p01bk4xh8lvgdflzhybwfblpx8pdsvbkv5vz3rhkb"; depends=[]; };
kidpack = derive2 { name="kidpack"; version="1.14.0"; sha256="0lxbi4sn4g68s23kcyaxpxdi6dpz7w3cz7i5n6x9ywa12mbnxzgs"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.8.0"; sha256="0bkah146rpvw1kh1r9j8rqjwh07bv5vhy3pc8gca4ssvn1l77js4"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.8.0"; sha256="1kvbk2j385c9jajdvgbpaq0rv8p9nid76fvjpkk2a4babbvbk5f0"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.12.0"; sha256="07vbrzyd3ihc2b3s5rs538pbq3gm1mqm2xywclx2agm4n318dbbi"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.10.0"; sha256="1nhph1ljbj0z22rh9c0dcljrddgnydhhghpah9fp8qv0hbjlzl1x"; depends=[Biobase]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.4.2"; sha256="0qn6j547i2d3rndpxb0rwvk9q5i0qkc3nm4gmmpipd34hz9g7yh1"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.8.0"; sha256="1ybc3zrylvwlbzyl5nrzgsfrzfqx5yqhair3x5sansdhrsmc383d"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.16.0"; sha256="12v51x33dmj591yhnrgbpvp1v55gkkwmi1r12niprkkzdy5q3jn6"; depends=[]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.8.0"; sha256="0d79080kmna8zckadbgjgfc4hyxnqsb6pirhjyf015z3qq3w7h3l"; depends=[]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.10.0"; sha256="0hycvsh3m96aqr888vq14y38r9dj1gdn3nhmvl77rsn19bn7lryp"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.2.0"; sha256="1zl65i127p04vlbx9wy7jmrvbdh679j8sz7qxlvmcbsmbxx43dm2"; depends=[]; };
minfiData = derive2 { name="minfiData"; version="0.14.0"; sha256="0w4gwk70ka6kic7dy7qfsb9nd791mf5gwr35x3cw7jqi6gdlh29q"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.2.2"; sha256="0j0jygm9nnw6zjh99l21yncddnqp93pfjsikjv80vlap8bhdndcy"; depends=[]; };
mitoODEdata = derive2 { name="mitoODEdata"; version="1.8.0"; sha256="1ffjvsw4rj76fa39r51fvhh7xx12zsjxww9p5spg5b8alxd40f6h"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.10.0"; sha256="1r99ig2w8006zzmckcwl9b1831qya1a33z3k1vw88nwakjib5had"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.10.0"; sha256="0c8zzbqd4d70fw6xfmnmcs8wfxffy4q5jdibbv58wxyszvvs2215"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="0.106.0"; sha256="0mii809mrh4h8whas47x32xn5xbslirhf28bi641k7c4yfay4bha"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.10.0"; sha256="1m8mg19qqv5pmqchjgqk6vbljimg6iw8caz44vj6095pxzjs78cl"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.0.2"; sha256="1s27aasqy93iscdqla7jdfg12i8fwwq4gb30pnv8g9amrx3ag7a7"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.2.2"; sha256="12l6f7k48ga1kq51svjgz1xw888bpqigm2ry774yv22pi01kq038"; depends=[]; };
mvoutData = derive2 { name="mvoutData"; version="1.8.0"; sha256="1d6kj8fjh401z0bbqbyy7r509aim63srh0xihhnf8k0v4hnxb2y4"; depends=[affy Biobase lumi]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.10.0"; sha256="1v0chfpji5pjaq5pfca6d80nqq4rzfm4078i9jmcwzlbsdkpwh63"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.10.0"; sha256="1ynmw06cj2jy61vy6pfjxx2yfmbqh5ks449zg2an02algc7cmhk6"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="0.12.0"; sha256="128bq3gk8af8c6lyxbzisyqmal0s1vd73rzsf0w1cj46riwb81ya"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.10.0"; sha256="071zjb0w6fqwaijkkj6g56wbf7xq2d1a7am4lzmfx1s4rrqlpxk3"; depends=[]; };
pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.8.1"; sha256="1q1wq5zff2qcqw5i86rrdvlf2y7n87xlcpf6grrahnh3dc8nf42z"; depends=[]; };
pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.8.1"; sha256="1ln4nnb92wvg84m3haczc390c7d1xm7qbiklvv1yp5f7saqglix9"; depends=[]; };
pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.8.1"; sha256="1d9sv8m4yi15zyjb3j3iva2530nzfwfb180qqm0v9zj3xqxfarnv"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.10.0"; sha256="11gj7mxx5k28ymdsf13132xy1bwablhp98wk5rx32833gx2cfafc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="0.106.2"; sha256="0gipg8j40966wvqyk77xldfqlcs891g1m47vym63s878lzz87ifm"; depends=[GenomicRanges]; };
ppiData = derive2 { name="ppiData"; version="0.10.0"; sha256="1v6cgbdlp6dhb4vajp8ck7gpz2hbdzs8qc621xmiyslv7v03w5p8"; depends=[AnnotationDbi graph]; };
prebsdata = derive2 { name="prebsdata"; version="1.8.0"; sha256="1cx3f99z886c7z83w35pvcw98lq2zkw27qrd4mgsi95qh1z8yz5w"; depends=[]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.0.0"; sha256="1d91m8mgq70s26lh3q9jdsa0fgv3p84wvbrvz2vd8r5z5vpph8jv"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.0.0"; sha256="0kiy78nyk420055m81zdiv5m9iwrw1s7bpn4mwdkjfd45klzv9vh"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.0.0"; sha256="13vcfyrl3958wkra6mp2w18q1d3yjcgb0ml8xasqnbicwiv3193y"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.0.0"; sha256="0q0n2blq1d7x20d08621gvcc2s96n0a1h0nwl7lcdb3alk0a3vmd"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.0.0"; sha256="0a94q06vfwmkq687gc4y3h974psq18f9rrpphldv7sscgx7dfniq"; depends=[Biobase]; };
pumadata = derive2 { name="pumadata"; version="2.8.0"; sha256="1gkfchlr4s8rlfqi6cc3l1n7ppzihlifc7jqvk15vhz6lsrsv0sx"; depends=[affy Biobase oligo puma]; };
rRDPData = derive2 { name="rRDPData"; version="0.106.0"; sha256="0pbn1aklw2x8yagj65436601drd81fklsgc7kwg8wrr519nb8mjq"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="1.4.2"; sha256="1bsh3i6cfyvg6drl7jz3k53g3bqcr6iz3gc5wb9kcbnvfxa6rzg5"; depends=[Biobase]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.10.0"; sha256="1c77rz7bir6rfsmry7f6bn4pzaqpwy178v8hkbkf9l6jskf29yy2"; depends=[]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.4.0"; sha256="0ysc83rcciq8isb834wfvz3iwvwa7xky28b4nvyhskblgb7d0ahp"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.8.0"; sha256="08d9by2grfpyl6xc137hax10nk8mjdpakg49richcr3g0yql719a"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.6.0"; sha256="1715vwd5y4pbll271ka0vszj7b4sb0z6xpv2vpkqilw71axwsj7n"; depends=[]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.8.1"; sha256="0h34yqcazpzh9scp0xpyil33fr10zx67slpn3c3m3vvi8g9aw2n1"; depends=[]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.8.0"; sha256="16ymh2r6g0kficrg2dnlf5hlixbzmi83vz2djxn4w7ws0bm67dfa"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="0.106.0"; sha256="18r8syb5glkaj6xdwqg1yqwg6lmz4w8z72394zkx58zcirpbdvnw"; depends=[]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.8.0"; sha256="0l52c7ps0yi7wmjbnl5hf5blm5wizgk0j9qfsz5dli7xp88fhjq5"; depends=[]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.8.0"; sha256="0llcpgp325hzjjhk05l9yhmfsksr6i4sxqvik7b80jd1978wklxm"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.12.0"; sha256="1fya1ma1yi5426l6m4hgisyg54y1pa7j86q5kn0dzibhijn7is4d"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.10.0"; sha256="0pnvl1bhfxa6s94csgzbnkfgbryd8yk4x8619794cdgvbxkfy11l"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.2.4"; sha256="00difbsafgzxw2n7k5d5rf50sjahrxxdqv65a1vl7ij5vkv1fg6f"; depends=[BiocGenerics]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.10.0"; sha256="1ang51lcj9vm1jx2hxm1dmgpl9gii9gkjzcvy0kik5ljkzwp5m6b"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.10.0"; sha256="018xp85f8k1m59vf6yymba5nx1cgq2v3jg029gj2i2k63d59iwx1"; depends=[AnnotationDbi]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.0.2"; sha256="1kkl337qpipxbq99k2s84398pdfi1mmzddvwj5g3ni95ibgppipz"; depends=[]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.10.0"; sha256="0hcg3d55lklfkqbrbir3q9qsbb3r9nqk3g2qmipjfa1s16vdbmvj"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.0.2"; sha256="1my9afgaazmh8rif298iym9hw0ld9iy18fbz78p5qxxr016j1vqz"; depends=[]; };
waveTilingData = derive2 { name="waveTilingData"; version="1.8.0"; sha256="0qc512xw3mpmx3dchwlpp8wsapk9jghnfgpq7f6332592r9dsr5k"; depends=[]; };
yeastCC = derive2 { name="yeastCC"; version="1.12.0"; sha256="0j90r5mhx44x85n42a5ljyhk5xs7mpjjckrqgc5y5rlbas3922jm"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.18.0"; sha256="1cpn0jwxlpzyv3fjg72z87wfc6l3l39yzdkyyaqkwk55fqgzgg24"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.10.0"; sha256="1dfdi86qdpcx62hpmdrkhw4qcs9nnsyn3pf8535ky9g9x9004p2m"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.8.0"; sha256="15cmh17lzmbby3z028wrd90aycd64r70i9r15lffvkbp7f443q63"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.10.0"; sha256="1xj2bszfyzm440nf0w4gbskh1j0lbzqdhr0c88ilppmmbfmgv9nq"; depends=[]; };
yri1kgv = derive2 { name="yri1kgv"; version="0.14.0"; sha256="1a0811vzim9cv3p37s6hbd4pqvzf4xnzi53w0kc5wrc8mz1634aa"; depends=[Biobase GGBase]; };
yriMulti = derive2 { name="yriMulti"; version="0.0.9"; sha256="0v984z7bvqzpsj0d0zw1dqi6zavv3s5mgx7p2sbm433wfk1jjs0a"; depends=[dsQTL GenomicRanges geuvPack gQTLBase Homo_sapiens SummarizedExperiment]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.106.2"; sha256="0v3j968815jwcxpj11hml5z6a06kcgvmh8lz539c2nryixr5dj53"; depends=[]; };
ABAData = derive2 { name="ABAData"; version="1.4.0"; sha256="1xlr9ps6s6xy95wh4c0m09rl2hkp9rms2gbfgsf0y46j1jak4ick"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.16.0"; sha256="01b0ksakw06l8q9a1ihb56sm0p8v78d2n4aji8yj1nnfi2kcgr3m"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.14.0"; sha256="1hza3ckxlc9k6mrdxc94r8yrsnj51ywcpinslrfyhanibrjvi8yc"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.10.0"; sha256="0f5my7jbp0x8r7hcj5rvnfa3swxh39apfby7rlqmkznr175jmsa8"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.10.0"; sha256="038yspp7l837i8lqv99alj1jsb51b27c84m4nvglpy3pzwvbqda7"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.8.0"; sha256="070iv3jschvz36fa6q8d4s6prlbmwj4m07f69yhfv4mlb30nz6gk"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.12.0"; sha256="1z6bn6sqdqd152gn2bzppy6g57n281mwmp5vvv901mb3w1i3yvgl"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.12.0"; sha256="0dqbf9rvha6cq0ipf9rjwx6akmcapsrh1k2p5kws3i0i2nw2kr3v"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.12.0"; sha256="1yx8pri6zdvv4hr4w43axb10d1y2bmqfp5mhhn9j286wxal7qgh0"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.14.0"; sha256="0prmpqyklxl47wna3kdh27bnrw9saa0s48xidmybs1nzgvizs5s4"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.2.0"; sha256="1bcr57mpvvxlryrhcpwzagv9gdirhfdmyc4rsv6giixqsj2d2m9v"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.4.0"; sha256="0hc5zqdajra3qy76z65qccllksz268vpnrn35232zp6w3i1zljx6"; depends=[]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.12.0"; sha256="1dvy6bg0949cx12smpzkndh1mq32jy0hfq7aaiixziqbxb32gggm"; depends=[beadarray GEOquery limma]; };
CCl4 = derive2 { name="CCl4"; version="1.12.0"; sha256="19f1zmicl6i90l11sq6ly9913v2913s37c5jz5341p822shf8knz"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.14.0"; sha256="078avwbs42nnaqxa1k4769rgxign1xmwv2s1irjgd9dkxqq2ha0n"; depends=[affy Biobase]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.10.0"; sha256="1jf4wrbwbzbn4rwjkn936zg1cddd1s96a8m8r9bx2z2zm49vc5bp"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.2.0"; sha256="0p8v2qxg2hj1q3r8pwpp46zfbwjyiilq85kmzxl8v2flcw9n3brv"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.10.0"; sha256="1yd8k5pacs37yvb1bbpb46h9s3h1r8kb01r1hiwr73m1rbsg3qdl"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.10.0"; sha256="0mw0q9s2dsqvc5qb5p57624raki7dgs0qc1anr2vaw1pi1gvfgib"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="0.108.0"; sha256="12m13kv1f1cxynlar59m5s0ihz92ff52j80dqz5m8dzsynbjckbz"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.6.0"; sha256="0zjc5h348h94h2vm926z592f1zibv000nvx039662ydhsxn58mp2"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.0.0"; sha256="12nkc500mqzfrg5yksfwf4f4kv2flk4l7lxx6ws0kw2hgrnm9yz1"; depends=[CellMapper ExperimentHub]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.12.0"; sha256="1hb4ay5a9z2c5zmjhlbbkcbycvmk27qimrpb6rvxkh3lprap2lv2"; depends=[bigmemory]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.12.0"; sha256="0wg9bsb1264wif23rqv2c863rr72crxb4n640q37ayf5zw7p6jgh"; depends=[affy hexbin limma qvalue statmod]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.10.0"; sha256="0v34kfkdpw8zmg1hkxbdjvk58m18ldxvsirz7s3i2vaf8k1g4r53"; depends=[]; };
CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.10.0"; sha256="1rblm57ljkq1dmzsbcmwm6p9gp0mgpgm2bbjczy0dppbhhr34m2c"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.6.0"; sha256="0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.2.0"; sha256="1pc26xa2hx6vsl0xpfwhrgvnnrbxgr5cnzpygayrzh3hs4ryi987"; depends=[knitr MSnbase]; };
DLBCL = derive2 { name="DLBCL"; version="1.14.0"; sha256="0baxgyvy07k502ndf81p2v51wrlb1p9fy0zxlx6faf0g80kghx7l"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="1.10.1"; sha256="10z534ffv975x08hxdfv871lm1ngg9qmgakfhamqcdlbc02y1j93"; depends=[GenomicRanges]; };
DREAM4 = derive2 { name="DREAM4"; version="1.10.0"; sha256="0swyywaja7cfvn370wx6cbh5pda724v3rd5iy4rhvm7i1pg3m4l7"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.10.0"; sha256="0hx68nzhjb7sqrc2zzn37n0aby388bvbxr6ads7k9rckz50lha19"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.6.0"; sha256="0n3ald8rg5yp5a27bwdfhdrl0rns50bmn7yi3z38qcvk6iiq9v70"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.12.0"; sha256="0944p9gk4vazb2gqn5s2mij0b2vyvgs050h61d1g2iv11156wc6v"; depends=[EBImage]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.10.0"; sha256="0vvzvxkvg6l0q143jjh74mx4xam3q4xc9wlxbl693aipz0kpicql"; depends=[]; };
DvDdata = derive2 { name="DvDdata"; version="1.10.0"; sha256="0rz5yhfcammg17rx15dnkcg43cwqbwi8ipkkqmlfkr3kb4km731v"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.2.0"; sha256="1rm3yjsngjrn86l2rdx0cz1kz9ki8h16znhag854l9yfahh9sr35"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="1.4.0"; sha256="0l12m881b5j0i7dw2wz868p0mqlfgfz3y5yyhj6kyzvwaj677p0a"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.12.0"; sha256="16q9f1p21xdh00mzb3vc2zpmyry9cfb884y2vp60gpq930vs3fsj"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.10.0"; sha256="0k0wajjj340wpc3zlcd9kylllfa3ly5cbfg8i38dc5g88hz5nvkr"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.2.0"; sha256="0hw83rnb5bl4a390h2x413zlss52bkbmfyq0md69zx1rlvxpdprp"; depends=[]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.10.0"; sha256="14ph3ll6xli84bpg9s43hmigwbnyprzfgmr4yifw77ssqkj0r3wx"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.10.0"; sha256="1wilz0mwizar8491wkym5x3xwxfxmyd9r1djh3xnc9gnq88df0dy"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.12.0"; sha256="0q06szq9vs46frgax6896wkrxw5rb89854vnib68kaxkmyqrs4rp"; depends=[minfi]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.2.0"; sha256="1d4caj4zrjlwkpbiclqxjyzzz3vg97p61hkmrxa18hbq8v9c67z1"; depends=[minfi]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.0.0"; sha256="0z966py4bgxnifly56mlyqvi5v4mh1ay5nhfb7fd9qciq42jclzf"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.10.0"; sha256="1dgaylgx19cbvvcrdr3wwr9rp3jdx89mlxzc4fivnzllmf1dyyqa"; depends=[minfi]; };
FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.10.0"; sha256="0r0iv8hp25ld9vpyij9lrk0xphaxcz4j4panyc83i18d6s9jw51s"; depends=[IRanges rtracklayer]; };
GGdata = derive2 { name="GGdata"; version="1.12.0"; sha256="0h564577s3aklgg2a34026nacfzq3mpfmwmsl19dcmk7all5i100"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="0.108.0"; sha256="13lc52xdv0mk4mr54i33k8rwb19496f8g8dj7xhh9vvx3dkcrl5k"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.2.0"; sha256="0y8f1cq8bwkjr79vias3snclqcddd8bmh3rl041s4pv5adxgddgn"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.10.0"; sha256="0lbh07ygyns6db3g0208691q7ry0mjg2lhis4pqw6rr122mvhh4l"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.12.0"; sha256="0ygkrm7gybfj4wb8rc56zrwyfbpgl1kz50dyrz5glwkgzxqn00dq"; depends=[GWASTools]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.2.0"; sha256="0jlmkqkjrffspny20w6yci319ry63sjnsychz6z9gwacy72fz14y"; depends=[]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.12.0"; sha256="1j79sxx3ig61ny8r0j40m4fba5rf61k8rq23b5w6rcq6zwysymh6"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.14.0"; sha256="0h42jvnmfdr14glnlspgiznxx5qh19pn6abw4qyf2q24yps5hrpd"; depends=[]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.108.0"; sha256="0i48h84qpcwraj8rhmisk6g7l6m9wf5a4p5pl6kr0ipfpr6fnh2b"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.2.0"; sha256="0xlqp2fx8glhykdnc38mjsxjc78bb3q72jx168djq2r0z3gxivai"; depends=[]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.0.0"; sha256="0lcmww0pyx3pjqnhvkdz9zv5s0cbrgxd7hvf0fz7hkcqn3sdw2p6"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.108.0"; sha256="1sw1i7i5hi1kx7h9nqbnxb6h4wl97yfirsfw4m9sb879ycbwq58p"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.10.0"; sha256="1mka0is34lxg7cyrsdahkm11xnvlz17qk7bs8bwlkxc7gz90aj3j"; depends=[]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.10.0"; sha256="0lirsd1875v3qkmszj2pbaj8r552ndlvxhfhbl62rwsia5g5i356"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.0.0"; sha256="03cxc5bs8q27n8jrclnndgw02mjqf9wn4gc8z39x2bd4gwhjjvpv"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.2.0"; sha256="0d0rns36wb57vizgmjwsjmgb3qgp8ng31d81n1z0wzhdwrdir9vv"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.12.0"; sha256="1l3xvgav4k3d5xn0wa0046dx2i395gndvwh8ni1452dx98wj8xlw"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.10.0"; sha256="17mcl8850pzfr5lmdis8659kfbfy63qgp61h3wrd1nbqn0skk5q8"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.12.0"; sha256="1d4ycz9di7nqqpf2kcjaldg49s8jfvyfgb5q5i1ni68grzfi6p4k"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.16.0"; sha256="0gs7793q5zbgiynpvkq46l0yc862sfy87090jkvw1m6mlci89qkk"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.10.0"; sha256="1cbqrn54fb7jqfaswlvq4ljshfwg08ra07sh1g4dpv0nb2kkgv18"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.2.0"; sha256="0j0ilzml2i0j7bql2qly14h1xnrvdar65fkaxkvv2ncbyxgisiky"; depends=[]; };
JctSeqData = derive2 { name="JctSeqData"; version="1.4.0"; sha256="0gw78wm9s8mz87zidfm49ly79gws8xfd7y4my4k39l1caqhlzbdd"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.108.0"; sha256="1q209v42ncczqwfmc71i0s3x6axlzqi3k474xccnhpsxcaz3s0a6"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.12.0"; sha256="05mplbzvwfqnn8ffdha1s99bhkq537vsmk46zq217cn0cl4csqrl"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.0.0"; sha256="1ggr9ayhz3h2x7g4n3l3pnnhdznw1iyp45n8sixp90ha9133hv9b"; depends=[]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.12.0"; sha256="101xq53ra360fhifn274nmdsbbj7pralhhgzzy0pr00a48x68lwc"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.6.0"; sha256="05g6qn1zkbk6daps9nnzqnn748qxda0avi2mbzsrcfqp231dkhs8"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.10.0"; sha256="13x5hj6503aavyv4bygf26krvj8ppwaalrhizwylkdn4zglv4nv1"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.12.0"; sha256="1xsas3d0n6h5xy03ybqy82cfh1gq97lim33mi163j598yhd1c6zs"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.0.0"; sha256="07awll0dmi7wnr5w7nc89g1mqf6b9r2mw858x0vzwkwf58qixqh0"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.12.0"; sha256="1gngz2a17n4lmcy59wcxywlgarp9h985wzmxz59vymx9n3in5lj5"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.12.0"; sha256="1ic7xdlfw0mikgmq961dc58sqfiyq2464q9w49hblcl25gf2pxi0"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.12.0"; sha256="1jiydpacyvdvlynlhcqrnc9xysbvn755lzrcz8pm2h79wanpcpsp"; depends=[Biobase lumi]; };
MEALData = derive2 { name="MEALData"; version="1.4.0"; sha256="01pn75kkvk6w1xim9hwqqpjv9gb1g7a4f4110hhllabhih3ygjlv"; depends=[]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.10.0"; sha256="1vdmh5rlygjmrkzy599rcr90anci3dzzz666b87b2w3z04vvyyqp"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.12.0"; sha256="0c4b69dhpkxarbna63dzacm81kizfdm425xmcb4xs0zs6jv6kj4j"; depends=[]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.10.0"; sha256="0yilicgglvb22gl5zv7rdjc5yczfz7kvzysnajb0qgpw94ha1wjx"; depends=[]; };
MSBdata = derive2 { name="MSBdata"; version="0.12.0"; sha256="1g0piddp8qpqf8nncsv73zymad5qmf2hxam44sn1m6227m4r8xdc"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.108.0"; sha256="0hw4f6syk1m4zxr423cx7asahq1lkbi7pnhspda7m5127fs5ikxa"; depends=[]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.6.0"; sha256="1ws6vn9pg1hmcyajrvyg645glj2khg43v75ppn72ylfysx8h86yl"; depends=[MethylAid]; };
Mulder2012 = derive2 { name="Mulder2012"; version="0.14.0"; sha256="0ah5digpg8j3dwhqx0gqf0r46vwpqmglk89k4h504vn18ff99vbi"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.10.0"; sha256="1pdm201xvhhbdd2blrg2yxjhm00pqvkxk0x1saykb6rrdq2zl16w"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="0.108.0"; sha256="0bk50jfmbq8p8c81jmcy85xqnqrw2amsa3f7hdnkj36k2gmqzzyf"; depends=[]; };
Neve2006 = derive2 { name="Neve2006"; version="0.12.0"; sha256="0s0brv5k92bhls8flbq8qbxs53gnsgibr9mqb3jkhjz039ir749s"; depends=[annotate Biobase hgu133a_db]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.2.0"; sha256="1bksxvax6j9wxjszkq0cx7jx84i14qb9dqlgjahjr559slkqbzmh"; depends=[Chicago]; };
PGPC = derive2 { name="PGPC"; version="1.2.0"; sha256="0im1s07l3rbcwmglm1vw5yq8qp307bbbkij851cbs639wlq7s22w"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.14.1"; sha256="0p898qdp5fnfads1n6rlwi6c2zp332m0jqdw21fsr3lx59d3s8jv"; depends=[affy annotate Biobase gahgu133plus2_db gahgu133plus2cdf PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.8.0"; sha256="19b2q9p76cyjl8dgmjagdr9zxr2xfinpp4qr26772s7bsxwq0rll"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.8.0"; sha256="0g2mjiyv415n0cl0nrj5va61f5pf9wdv27q92xsbzp0fgybjd4hy"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.8.0"; sha256="0zhrvynj3my4pdd57nybw62jkaqm039i7vm9v253qzdaf8h0xs3w"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.2.0"; sha256="1i2qa0rd0ncx77cr1d3f4wb939na5ycpli3q3d8k2l027nl4rjks"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.10.0"; sha256="16k9nvxhs80vfcvjhr3dssxjq53zlm1802dkr24icngpnfmlwnj2"; depends=[]; };
ProData = derive2 { name="ProData"; version="1.12.0"; sha256="14mrgfxk3jrzy3ghdcrh8flfkm4b6xi42sjb8sws57jfcda0zd2v"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.0.0"; sha256="1gsz60vg8h0w13v29bkj3pczivn7cpkg515rl5rj42vjxbw4mnsh"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.4.0"; sha256="1l0m384swvnxz4jrcgzc0a4fr03g12by1b5y9ncwdkwrz8imr52q"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.4.0"; sha256="1sp8jsjy0gji38sx44qdrp9v0s0inw0r7hrgwbjvr6vn6xmifg6i"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.2.0"; sha256="148rgjgj1fkvc4nw7mszhc2dagljhx672vpyvldjr4cnkwwd9vwz"; depends=[]; };
RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.10.0"; sha256="0bfpr197gjhwszpmvdfkmfa92yrc9jp567h5whzl0mb687k6ax3n"; depends=[RIPSeeker]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.12.0"; sha256="1fzylbwhqn5al98c1jmdj7bzn7np233h617hbzcxblknaglafv0m"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.12.0"; sha256="0dv23vr84xr3rjk0syx9d1x9zj2d42rl3yfsbh2aaf1rcrjafc14"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.12.0"; sha256="13pb2ljr4mq741vc443r573ynbynjsrhmas5gf2qnyn4j4wj5bra"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="0.108.0"; sha256="0sjw006kzikck8kdfvpqyx8bkhmfcbz363imgm72avzdqn7z5430"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.2.0"; sha256="0gf5l0mzihhl4rhfqd81g4ql8pvwm2lgj9qjybfp94pr3h9kkfvx"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.2.0"; sha256="0kkg0ds8p5rrjcdzq81g1bplxl685k5iki9w11kwpkmnnxslf5f8"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.2.0"; sha256="0088cm640mzbzbyj1pmvi35l0s2zpl5x2pmhj2lz2zjp4dis2g3p"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.4.0"; sha256="0qhg1dx77xarjzb41dpvhlvl9aqwsyscavk3n3w33zpn1r087v33"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.2.0"; sha256="1grrcrd8lsjfk056r018y2rkn2zr31k4jc854mllh7sgpg0jr6br"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.2.0"; sha256="1mfbq20s2zp234arkqy0g5km7y8jnymwnm4vl13vxqqcv12f3kr8"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.4.0"; sha256="0jxr2g8x5z4vyhs9n3ciiis45bs3jg3vg1v4mwxl4v4gys8p3i9b"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.4.0"; sha256="0ag3kmh2zfg9rqpmiih686klpcqd05l2cf5zfvg0vjwcim30xph2"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.108.0"; sha256="134ixgi809nmp54p7h94878pl61w3djrizvb32cb228a6djc1aj4"; depends=[Biobase]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.12.0"; sha256="1hzgq16mhrd0n7myav91ykmbvi3r71g625x52lvi61shjism5jp7"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.6.0"; sha256="1dssr1d9md7xl7fm1b537wxsa1bqqwjvb8mnrmqwl3ish0asy525"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.6.0"; sha256="172rbvi4gqsygb7fhdymzm0a2r4wyikgzfaxgjj4bwkl24lss6ac"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.6.0"; sha256="100dzzmmvmb5s43hckn286waja0qkd5rhba0cas3ifg5n21inbyc"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.6.0"; sha256="1jdr4vz4dp4q1ifjz38s5i6lwdvaws29176679m0xsckmvw8rlf8"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.6.0"; sha256="0bfcs51lmrm5ydd5zbkpkaw69ziq3yg00hi0kkcjrhk7nn1kjp66"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.6.0"; sha256="01vwk652hhh6rc6l0q0ylnzh0ng5ck91kki37qib7c714fy6f1fa"; depends=[edgeR]; };
RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.12.0"; sha256="07jkzxavpyg54ddh4xmzxsilcrr8x8w7lj6c4s02s8j23rxzxi2h"; depends=[easyRNASeq]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.6.0"; sha256="1lhc5c6icys4qnsbc2ixck3h63fsa8pnypam5k6wbvw79afr4xnm"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.20.0"; sha256="1ny0fdgx2kv6hs0rqnc70aixsa2cs7i2r17dklv529iks49i3n2n"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.10.0"; sha256="182agiw245zrb7lbyn1c38w1kljqs73lkvhvrlrilww1bfhwlrwc"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.4.0"; sha256="1w36157kdn1fji5pgj75bf88isfhvavpgyxnm9dfnzz5r1qaxx79"; depends=[]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.6.0"; sha256="1rsagb2nlc8airrdql7sa4rl1h34nhmds4lz0yx5i3dca8jzqn61"; depends=[]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.12.0"; sha256="1cqbprdlrz3yz1zjjrd33wy4ybhkfq943pv3pi0bx4yz9gqc5625"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.10.0"; sha256="0sqdgmqs3ds3hnfn7nmmzhs8m5if8wy8rrfp7q76qhz7winqmqxh"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.16.0"; sha256="0nvxix2hsamcffdg6zqlvavx6l41qmfz7q1ycq99rjmv4rznl1z1"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.14.0"; sha256="16yisl8m9ggb995snsbhsfxxnqr2v2d5k8ay9w2hipkacaiskwcm"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.10.0"; sha256="1008i15x17k20596da1ai2dxqhyqi9v6bpskd0c66xvhnifmzpna"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.10.0"; sha256="089ddz2w5kqn3zc07ji9lb7k6msd7r4a6j6aymkx59d10qlx97f6"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.108.0"; sha256="0zkawybz6fyfcsga92vw6mx1y1qb6nrp9qcmjvd8ki9phhg7k8yb"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.108.0"; sha256="13ipkl1rd2s0vdz32jp30hz3fz7d9hmhfx626jy9q576iqpqb94j"; depends=[Biobase]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.10.0"; sha256="1jw9nhylj82g5gmhl1a6pirf4jyb1i79mm9a3afqrcgv55a5ksvp"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.12.0"; sha256="0acijg56wx91xqrmgqp1pk8cwl3wf5j4f8csdd9p46frlfa5iw8c"; depends=[TargetSearch]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.4.0"; sha256="1pihpj8q0vrhwip6c35lnv78r3nqcs1p18npb26bxhv02hb8cc6i"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.6.0"; sha256="0lpmrqmgcv96rbfylgsaffwwp5qqnj7kmfniahhj4zsxyjsy90fg"; depends=[]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.12.0"; sha256="00pdinf4mnl5mbwlzh7vwqw775ag2v2g5b5lqnhmxsnyfqsxgpb5"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
affycompData = derive2 { name="affycompData"; version="1.12.0"; sha256="1yz3y8y169qla8x194zlc3im43827a7233gla6arv552yg3fj703"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.22.0"; sha256="1zizi0p3r3y9h6kk2a1hci9x23i2wbq1krvl9nxd6jzx09fq25sv"; depends=[affy]; };
airway = derive2 { name="airway"; version="0.108.0"; sha256="00vxi6i9c5c14gfqm5w9q6lg0h1hb96rfm8jqsvw81lpqqlnyjgd"; depends=[SummarizedExperiment]; };
alpineData = derive2 { name="alpineData"; version="1.0.0"; sha256="0s3xls7b71xn6f9fsqim79cnv4mf5xz1dli9rr4ralzllvh9hm9d"; depends=[AnnotationHub ExperimentHub ExperimentHubData]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.10.0"; sha256="1fzjic8prjwpx43imm73g0znzry42rlziyzr5n6zkbgqx44kh398"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.0.0"; sha256="1y2n3xdaccfmij7jaxgzjh1bwvaczp8wsd6757fm8mn1qgalgjdc"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.10.0"; sha256="1pc4av4i0iwxg0v5aqb9rn0m2z8vnqqwxs57x3nsdirhl7pv92qm"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.12.0"; sha256="1kknkispmbxhwikhl0b3g2p0885gm82h3bdl6id4rwxvli86db8s"; depends=[beadarray Biobase]; };
beta7 = derive2 { name="beta7"; version="1.12.0"; sha256="0lm2lz36lmz6kxp1ia7cfd129kif9a2vyn2cngjsvhvm2pxplrl5"; depends=[marray]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.12.0"; sha256="0dsz57a9si7i06nwvmvn0l65jhc1xbc3ywjh1z32smm8rvn8x90b"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="0.108.0"; sha256="02fksg7kpb9knj7f47l0dbc016min91xf9d5xccpa833wylylyjj"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.12.0"; sha256="0smmvhb38z6wa7inbg5y8skl10p7yybq9qh2847xpzdnivldxfwa"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.12.0"; sha256="0bznvksrmpxp0ba9md96ch2qsk67jyda33b74bzk0hrxkijhm1i4"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.12.0"; sha256="0sghqg2fs7khb54x2p3mlc7mynbp417bccszcij9gq43njwfdra0"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.12.0"; sha256="0pg862q0m9m51iqk85gx9ihl17ld0x7i7j39g0y7bcvr7cy1djrd"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.12.0"; sha256="0pidz7safi6z2nbrz2wrjqx1ygyxg6ggagv4sfdy53ym07lwfdz3"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.12.0"; sha256="197g42apvsp9vaipj4zf3kma90j8zsvx9b8q4crdl5czvkzmpixa"; depends=[]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.12.0"; sha256="0amg5fn0dprnz5wwjacm73xbih1bbw04f0vm3rfplpiwqh83cq1g"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.12.0"; sha256="0m0dj3rd7m80la8h58s1lfxfkmz3a242vp3i1yiv9y6c0hca7yq4"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.10.0"; sha256="0l7hnr6w5g0n0ma24xm57dlqdrrlrhm6a4cw4p65hwn9djxxiz1m"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.12.0"; sha256="0rzp8a210vk8j9nlf1g228jsccdbabl99jbd27qi90bbs0kdnkp3"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.12.0"; sha256="17r030iajkaash8jfzfdb7d2xfd5mn9q27mkc11dycpqbji61q1q"; depends=[affy Biobase Ringo topGO]; };
ccdata = derive2 { name="ccdata"; version="1.0.0"; sha256="05raawlm17vhiap34z812g1ri5yc77h7qs4lj1gfk1kkcpj2knsf"; depends=[]; };
ceu1kg = derive2 { name="ceu1kg"; version="0.12.0"; sha256="09xi5fvr7cigs1qs98phcapzqi8jam34gky2pxksi9gkw2n9j451"; depends=[Biobase GGBase GGtools]; };
ceu1kgv = derive2 { name="ceu1kgv"; version="0.16.0"; sha256="11hyhddf395hyypxsl8na23pwcwlnmr639c927wxqibxxp1lfqsk"; depends=[Biobase GGBase]; };
ceuhm3 = derive2 { name="ceuhm3"; version="0.12.0"; sha256="03qkfk9mxz510lmr9spv74d3138bvfcpsgp0qnjw3jj2xiwn4jqq"; depends=[Biobase GGBase GGtools]; };
cgdv17 = derive2 { name="cgdv17"; version="0.12.0"; sha256="1cl725dhyh81rsxgv2icfljczbcgsnqba383gjfyf06d2qarby1y"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
charmData = derive2 { name="charmData"; version="1.10.0"; sha256="1v760z5br1cj5dj97ayl68dv202086v2mcnhn6bpv0kf62q9mia2"; depends=[charm pd_charm_hg18_example]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="1.10.0"; sha256="0zcj4pa03ny4b1rng4ima23jc6sqvsznp52d59vipnqd4jg1ic95"; depends=[BiocGenerics GenomicRanges IRanges]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.0.0"; sha256="0d0g20mg36mxldl9f0bzqbz9vzp526pqy501k0g7bmj5sbgd2p3s"; depends=[]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.10.0"; sha256="04bkk8360pc0sp8n1z16smj888gbglgghklciwpzk2d513wwapdr"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.16.0"; sha256="1kjlw5qi6yvk6amvnmjjnr5ypvqmslmm9lmkgdgab3s38hyddj2a"; depends=[Biobase]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.10.0"; sha256="1k957gad0xlv0nzcimypf32dpqvldc1w8lj2a274y8spb66imfnw"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.0.1"; sha256="1l767mg3bknp91is7mqb13w2kpdihf4vbphwhqyvmzsl5rv2vc7y"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.6.0"; sha256="1l1lzkyrvpz334xda4z3mxh2ql3zhhmc376znrjfryzi5jbypnh4"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.0.4"; sha256="0xpq25rmg8bxwsvm35qm20l6b7a3kg5p9ngvj2dvnf00jn7vv2bj"; depends=[AnnotationHub Biobase BiocInstaller dplyr ExperimentHub magrittr phyloseq tidyr]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.12.0"; sha256="1qjmmxh0cb4y418rl5wg8inkj5cffniw7jd6vjj3j2yiaq9b5d6l"; depends=[affy BiocGenerics]; };
davidTiling = derive2 { name="davidTiling"; version="1.14.0"; sha256="0n7invq1j0lmrylzrggmlndj4ag196rhyn0lvi746p8sxzdapfaf"; depends=[Biobase GO_db tilingArray]; };
derfinderData = derive2 { name="derfinderData"; version="0.108.0"; sha256="041yq05x9d09n82c9wnwqa1rakkf4p1q3rs9vlacl45bdqdbdsa4"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.2.0"; sha256="0vvkgfixvs76cymz0nlyzp7sh9jzd1mcbl5pbnnziybwn5fdpw3g"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.6.0"; sha256="0xyvd8jdpn3y9s88z489cinacb4bnnp1jqg2aj7h9hhaj95pywsq"; depends=[Biobase viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.12.0"; sha256="1mm8hlivhcf9f01aqdcipq4wz7x3ga8znpcpi69jgh3iadf5x2xq"; depends=[Biobase]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.14.0"; sha256="18ghl3l7ps6xz90gyrnz3zc0rba99yg8ry9fpfbv7yni888hl9bx"; depends=[GEOquery marray]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.14.0"; sha256="1s03jpb83j8xgwxdr5z7233175jhd4w7vikalxvh1mvk9bqa8rmk"; depends=[affy ecolicdf]; };
estrogen = derive2 { name="estrogen"; version="1.20.2"; sha256="19f1gjppzfg21ci6jdxgwv7h14mm89spnj4qr71pwid0a4kiq6gn"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.2.0"; sha256="11c1swf7n9g1vnvidmcjpvzj3hgv4dgx6civv3plvamzfcz3jk29"; depends=[Biobase metagenomeSeq]; };
faahKO = derive2 { name="faahKO"; version="1.14.0"; sha256="1yxrmnbpi706q23n6jc3hngl378w41dkhzcy4gqlbcgwdhbi9yq5"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.12.0"; sha256="1ws09sp07i26ky6pwambw3bvnd2qx2rsvm055hp1j3vrc7qvawwb"; depends=[Biobase]; };
facopy_annot = derive2 { name="facopy.annot"; version="0.108.0"; sha256="1wxprfj0420qfbls1jd58raa7ff98fhnna804slagrs8r2ka7kqb"; depends=[]; };
facsDorit = derive2 { name="facsDorit"; version="1.16.0"; sha256="1dla6vv0had55afsv2h8hizkqbng7schadb5w5nbk3va7hzbnjzb"; depends=[prada]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.12.0"; sha256="16n6kfcq33byrn0xx43bn52c0rbzw3ars9wxg9yd9rfnf23scmbb"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.16.0"; sha256="1sr672f6x52rhic69i8cii04cd204ra0lhpxh0dqm78yxkp5mqxc"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="0.108.0"; sha256="0fdsaymwv057sb0bddkaqz320wm6bk1hikwy9js4pc5mbi2r9q1w"; depends=[SummarizedExperiment]; };
flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.10.0"; sha256="1z2q9h4arv8a89a5g5j5pzp1k02kmz1h6g0zrvgvz04ys411phv3"; depends=[flowCore]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.0.0"; sha256="16sgzy2xpjnlm22ca3fvdcfzlfyylsxpjzbv8xaz3lmb7gf8fqix"; depends=[]; };
flowQBData = derive2 { name="flowQBData"; version="1.0.0"; sha256="1lyj5xkc70l3szxspa6gasnx5g4sv6azwzs0b1cvs5y5kngxpns3"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.10.0"; sha256="1pfy1f0flkf22a7ijb2xay6za80y9ny5ja2dy6p4z9w8cqyk8vqp"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.10.0"; sha256="1iznkg12c50lzj0xj1fz92ybqap09fysx0f71g84qpmdh7df5aap"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.2.0"; sha256="0h596g0j6by70ijpli9m2wnxnj7g6gz92vv2dl68s7jnya4n88s9"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.12.0"; sha256="1fn4by56fqa9dfyb5a7pjv5f6nsp8gybgp572dyl3jq7bp9imr3j"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.12.0"; sha256="1cwnik2znx13i4p8g3wxyk19r9pd3flxha04b0y4404pvwxa7gac"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.14.0"; sha256="0yshv46pj4fjyz49azbrzdqjzppkx4548fsb2k77dvypim6hiiwm"; depends=[]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.12.0"; sha256="0a5gmf667wr1vx2qalz4fvk0c49m6590mvv96ijnrdd9p6k1g450"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.10.0"; sha256="1a4qqpcid9g1zx5zrpcshlwm8xk1bbppanyfpx077sa0ifpjcxny"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.6.0"; sha256="16dqwb7wx1igx77zdbcskx5m1hs4g4gp2hl56zzm70hcagnlkz8y"; depends=[]; };
geuvPack = derive2 { name="geuvPack"; version="1.6.0"; sha256="17yr9zm3kk7744sdiyyls4g1n6fhwfq1gafj1713viygk46ff0ps"; depends=[SummarizedExperiment]; };
geuvStore2 = derive2 { name="geuvStore2"; version="1.4.0"; sha256="1vrb5a62p6wm9vsf7q9hwjr0n5yv5cqr3z50jd6ymwxb9jy3f4vg"; depends=[BatchJobs GenomicRanges gQTLBase]; };
golubEsets = derive2 { name="golubEsets"; version="1.16.0"; sha256="13lhfhagnc17yva53ax0847mzrlp65bsn8b9haq678kjmd0ry25k"; depends=[Biobase]; };
grndata = derive2 { name="grndata"; version="1.6.0"; sha256="0hqli6f9x7amhlwgszhhvrhbazb3ga0r31107n5v5nxfwqmbmgwg"; depends=[]; };
gskb = derive2 { name="gskb"; version="1.6.1"; sha256="1az4dw0hwh2ba1v9k5zajgcicxihmr668cvw5qqka14mvh1im30h"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="1.108.0"; sha256="13rh4bk47q2nkfgj6sbwbifcidmf34i7s4dhymr8gabplxfcy9mj"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.16.0"; sha256="1aaiszx3dhphx62g246w9qngadqj9azkyk7k49igsng329mz8836"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.16.0"; sha256="1awqvkxcnb3zmi5cds6krs4hc4q90q7kn592ir9a3ypsqsbva4dz"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.16.0"; sha256="0cgwy7fqmhg947vfhl4cymj5ssb7avdj330cj7cjil2zilcg3a52"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.16.0"; sha256="11y06piiwgh1v6c489fkjxf8yw9zfc0llrhhnx2syhscfdgw94md"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.16.0"; sha256="1a0x1prw77d1lddlbdnvqank98xx8gd7a1a8n6c6fwkjynxn32ha"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.16.0"; sha256="0rppn6x3f2fpr369mv04pg6pvbmp0j4lnyj84l0vvmqrjyij3vqz"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.12.0"; sha256="01spjp27icgfjwf3cjvz8w5kg6gpqmlkfxdm3j2irn9qvpphw186"; depends=[Biobase Biostrings IRanges]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.12.0"; sha256="1dfcc1v22wbzbbsrkjvy8mhv6brxisz5yv1g7zrpswnmchbqxkvd"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.12.0"; sha256="1ig7myihlmcd39g6qqmbb8fm59vpizfxps4x8pbj676p1578iaw9"; depends=[]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.12.0"; sha256="0bnl9z34xn4frqlc9pvnvp4ng1ky0vn5zvjwjv6hc6dki14cgfxp"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.14.0"; sha256="115zgss29249az653hw2cd02skmr9fbivsh6zj837m4scnbjwpqz"; depends=[]; };
hmyriB36 = derive2 { name="hmyriB36"; version="1.10.0"; sha256="1whpk1479qhlxmd44bhpsm1xlz2z4pxn918kpwis9mn1inwbmwp0"; depends=[Biobase GGBase]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.14.0"; sha256="16ad8syrainj8zpp9mhqfxq8xsn9jfdiyf29zjhdb4pnci3rqf7i"; depends=[Biobase hgu133plus2_db]; };
iontreeData = derive2 { name="iontreeData"; version="1.10.0"; sha256="187d9mdamp3kb1nvp0ckhza6ws4ga9c4fw35isnc1jsssag1pf7j"; depends=[]; };
kidpack = derive2 { name="kidpack"; version="1.16.0"; sha256="10cab09hdyrndnjgazbvlm3c89qmmj458nbvdd8liiipq1r6f3qv"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.10.0"; sha256="0s9brwvhmmylbs7fjkg4g72kd6kdycy0qmk5hgldz3n266pna293"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.10.0"; sha256="1n3np631cbdvd809af4s9ngrz2lrvclb313dwz6zhjsp0y0gs6n9"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.14.0"; sha256="1bagqlq1j6z578zal05xxvvqnfi33rrlgbdq7sj484wyr6jbgxim"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.12.0"; sha256="1lqc2rcsyqzn9799ak61dgrb917f9cfgn7x7ck0d4629sdczm7x7"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.0.0"; sha256="1c1g17q3ffc4k82ppb1vzi3567wza2q8p06ahd9xnni5hmb5v8jv"; depends=[]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.6.0"; sha256="02vx2v0sdzgwzpcgcnszs8q4jdimsis6lyfq6f4pm4b7fccy1as3"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.10.0"; sha256="1pn0i0bhjs2kyrafafhh8kfgvs0x6nnny8p6zpnivyn4y8hjh5lf"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.18.0"; sha256="1ijr4856mdfapcpbmndxhllsvmhih1cra8zm6k9wz1id29b12s2g"; depends=[]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.10.0"; sha256="1f2f7798j1pc74414mvx48w6bbxbsk2rm7l1298sfl1av914yl7a"; depends=[]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.12.0"; sha256="0k5vgccwfnybbwngbzyz1j98h9jwidv3ypfymz01yjr6cahn5fgv"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.4.0"; sha256="1gabbbvnmw38snv2zn3i3763n4r38zr9rv854snmy9fhykry0rlq"; depends=[]; };
minfiData = derive2 { name="minfiData"; version="0.20.0"; sha256="1gg2dg3s92vqnigdg56j91zifv2kl9asiqrrbjmac0pyd0vi555c"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.0.0"; sha256="1dmjdfnwia8ka2lya1fin4kj6anjn9szhphnypzhaxxzmli11x2a"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.4.0"; sha256="19xlsnfcr9fh7f3nmd0aj6sd03c0bd6ibfbx4rkxsmgfsdfvidzh"; depends=[]; };
mitoODEdata = derive2 { name="mitoODEdata"; version="1.10.0"; sha256="1br92nqvfhc67dsz2b10mzp19rk8bbfb9zaawk6n4pyfn4pdcn4w"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.12.0"; sha256="0fgb8ifaygs31ck0xybwr5p85zvkw236lilzcsn9hnsdp2zckkff"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.12.0"; sha256="0g2g5kpgpv436k09n43jilzb539faqvp9k41h3xfgw8kqsln10fp"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.0.0"; sha256="08kz9ihbjxfi64sds5s04ay9g8y1y6fjyaxvd2mvqvzwd3hykzqh"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="0.108.0"; sha256="0gcs6r3z40lc8rsnlnkf01qbnws7bcvi19gx6r2jrlbma14sb22f"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.14.0"; sha256="0330ahsx2a5rbqp8kswrq5r85kj5mvv9j5w0bx648isya6j5fzsq"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.2.0"; sha256="03f3jlpl2q9kkb1q2bzxda5yddgpwhhnbb5y209j101yf2z1qv4b"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.4.0"; sha256="02dzwsjagrwgnrsp16h72x3sgl5gms8xnv0vjbfm9m6ynjcfr2y2"; depends=[]; };
mvoutData = derive2 { name="mvoutData"; version="1.10.0"; sha256="1hmsk9zlxrqf5znf0rlj1rmsdzdwvr8xnxz6q85ggrr1l9n76g3c"; depends=[affy Biobase lumi]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.12.0"; sha256="09wisspjxaim23w0lhbk5sczghfjsn00f7qc6zp8d7rvp511c56k"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.12.0"; sha256="1ibf9wia8vn0vmg46rln7lkpd1mm5ahc3cb2kxkzinmsvmqbi2nn"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.2.0"; sha256="0qhmrx4gxprjyd79y3jrx3s8ya6f64jq69lf8ykwgr21h7nsacbl"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.12.0"; sha256="0ib1n90k231qckd4kv2wjkw7xxc88gc8h651r06rqalgmldfxg8r"; depends=[]; };
pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.10.0"; sha256="1n6dbsq6nbalv4iil2qycwzx84710sz16m2qqq44cgjw2pqmp8ki"; depends=[]; };
pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.10.0"; sha256="0gr4xc1kah9n9j8q2yq3an780p8l8qgrba06vc8yw28q9s14lcic"; depends=[]; };
pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.10.0"; sha256="0xr0qw6z7dm7brp118bdjh53j83pgxgsbfyl2b1s4qdcqp0b0j5i"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.12.0"; sha256="0lv60jkg8zqhbz1hnc206zmxpvz961plgj3s2zxl925pzqgw3jdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="0.108.0"; sha256="01biimjr6j6z1plgsbq9qxk4bzg6mc5v0f5lzwwid8r0n6aq9nfk"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.0.0"; sha256="1qqs5n1zbp94p9g87rah3ikdl7gir0m76nyd7ccd232dxkzyl25r"; depends=[proFIA]; };
ppiData = derive2 { name="ppiData"; version="0.12.0"; sha256="05cg5hiv314a88wfwnd9milfcin0xmsvvn1zzxqhrj8k7j0smxq9"; depends=[AnnotationDbi graph]; };
prebsdata = derive2 { name="prebsdata"; version="1.10.0"; sha256="01z22jg4l2l55nrb547xih5ra3rcla4k66j1f210rrsl4r5j89wn"; depends=[]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.2.0"; sha256="0xg4xwj0m892lsix27bmi23dssl6fx3y93g14mwnlpq430135j96"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.2.0"; sha256="189iyjfaylck58w0pg3xnrpg6yld304dgprpsvfjhmrc306v1q79"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.2.0"; sha256="0h9909wl798nalf1x8qc4p0yx6851r4pda24y7vyxvy2jrrah3kq"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.2.0"; sha256="1ncri2z1sz4kb0a080y4xhf7ah3szp890h6b3xvmc5c6i8h2pysz"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.2.0"; sha256="1kffm7b9rhb6jqsz354almakc2dc5zxczhzg9l2wj59knw6527js"; depends=[Biobase]; };
pumadata = derive2 { name="pumadata"; version="2.10.0"; sha256="03xx41j8w6lip7rsj0fpnq4jrlmhki63wqnmfh9816gc8g7a5yrh"; depends=[affy Biobase oligo puma]; };
rRDPData = derive2 { name="rRDPData"; version="0.108.0"; sha256="05a42rayxnyzajzabvgzrbj56x7sax96g090r529fd4055582s52"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="1.6.0"; sha256="1c95166shc6yflpgl0wfq26mmr5qypiwhidf0vfkgpp0zk30hfd2"; depends=[Biobase]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.12.0"; sha256="1gc5vpxjgnjpar757x7i5sk7kqy5jhvd11kad1liwfnz694zgkn8"; depends=[]; };
scRNAseq = derive2 { name="scRNAseq"; version="1.0.0"; sha256="0zh3bashqamivddjahaisl92d8ipzahki10wq8sz6myrb57iavlx"; depends=[SummarizedExperiment]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.6.0"; sha256="057rs9s9lf6z3z3k1671r0fzk24jl8pmn1zn0a8x2n66d3bpqv4d"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.10.0"; sha256="1g350lys9gdrfkwsmb460y9pbjkzcgxwn22xfsl430mblh09ryhm"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.8.0"; sha256="0fik3w4qs9a01x54im5ckjwywvr1w0jvcmb0x2ym0xba4q4ypvlv"; depends=[]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.10.0"; sha256="1nl0qi64kihvvp7kkc7y7zl3m938n7mrkw4vrmdshc00j3ydl1k0"; depends=[]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.10.0"; sha256="1c7zkhv1ijxxy3qiq6rwniay10kqybfqzqysfb94wasp688dixwp"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="0.108.0"; sha256="13b3c66ijax8d3cw26wjmx2cjnh06z8dx2ahq0xwic3rj2r8ax61"; depends=[]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.10.0"; sha256="1k8rck49bpp7h2why7fl6bvhv67krzhc4c0ppily3ah2s9vyxm0a"; depends=[]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.10.0"; sha256="1vb3c0k3zrkng95ym4h17y48bcq6xb4izj326w4blajcfyil7kdc"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.14.0"; sha256="09gi8z5ay7hyikqr26npyhim4dzi2hkidnis46ckzfqx9dlar94h"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.12.0"; sha256="1ynqzxn8a76788chcfq1vw7mrsm7c39qdjzjr42x4lvabr32gd9p"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.4.0"; sha256="1wbf4488b6zmh72m3zpq5la8qybn6gfr89k7r4572i0awgyxccws"; depends=[BiocGenerics]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.12.0"; sha256="1gbab6zlzc7f2ywsv198yyf9fr2yq2a7y942mjclfg7ji0zf81kw"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.12.0"; sha256="06r5vxqqglrgpqyf3837kxl6rb5qcxk61b1g1vyi15kb7rzz0qyp"; depends=[AnnotationDbi]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.2.0"; sha256="1786gqxz4vhvjc0cxc2gi5hz9wnvspb3kmmap1nssjnd44cq8ypa"; depends=[]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.12.0"; sha256="0a6g2lnj5m958yagnkn3fl4x0fw6m4gp9xq0jsv6z7ixs2p73xin"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.2.0"; sha256="0618jzzacpl7cipcby5v3rd2rb3x9vqiaf9i1arn83h4znwlnykh"; depends=[]; };
waveTilingData = derive2 { name="waveTilingData"; version="1.10.0"; sha256="1ndqbqisfr2vnfqlmjxvwvkcbs042rqvsqhlpa4pg9l18nfv3zqh"; depends=[]; };
yeastCC = derive2 { name="yeastCC"; version="1.14.0"; sha256="1sjy4c6jvhpjpr47l0mpa7mms65jj7c1fhv2dxiqxap5pcxl9s40"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.20.0"; sha256="17bassc4xn9amlsa33rscgbkk50xwrz3i3vlh9ym1184wq14jmp8"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.12.0"; sha256="0s3458lvcn7xpnwkygl426zqm7h35cl59r0rlp0znnrjvr3f16k3"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.10.0"; sha256="1085snsd7wsi9sjsqm551i2bnv8pf234vvz6xpw9fz0inr6m5wqq"; depends=[]; };
yri1kgv = derive2 { name="yri1kgv"; version="0.16.0"; sha256="0xqlqi665ww3w00g5wv089ydjs74iy07xqzbn19bpdqnkypm83rx"; depends=[Biobase GGBase]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.108.0"; sha256="04pbkfqb6l8qgxl1263jhhd7gm8hz908c47q5s1f1nvc3403dlbp"; depends=[]; };
}

4
pkgs/development/r-modules/bioc-packages.nix
View File

@ -134,7 +134,6 @@ in with self; {
CellMapper = derive2 { name="CellMapper"; version="1.0.0"; sha256="1ixii9ppg7jhwvazzzjy3dq01x35yc3k81j698988dfrdls0plcv"; depends=[S4Vectors]; };
CellNOptR = derive2 { name="CellNOptR"; version="1.20.0"; sha256="1awz7k09rx03f8dq5g9mmnlizpx6232vvc03ycah3r1wwzgfzlhd"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
CexoR = derive2 { name="CexoR"; version="1.12.0"; sha256="110c7p0y3l7b491bvr78n5z8f4gmfgfjndbd8pnhn0k7abb9bvs9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
ChAMP = derive2 { name="ChAMP"; version="2.6.4"; sha256="1f8ngnzp6yq4x746vid72ind2bi7l1wdfnipyj2wn0gsh2jpxa7c"; depends=[bumphunter ChAMPdata dendextend DMRcate DNAcopy doParallel FEM GenomicRanges goseq Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICmanifest impute isva limma marray matrixStats minfi plotly plyr preprocessCore quadprog qvalue RColorBrewer RefFreeEWAS RPMM shiny shinythemes sva wateRmelon]; };
ChIPComp = derive2 { name="ChIPComp"; version="1.4.0"; sha256="0wr9qrw9mnjl28fw764vhjb2shif6fl3z0hbwkhrfiz1974rdw0v"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; };
ChIPQC = derive2 { name="ChIPQC"; version="1.10.3"; sha256="1nabghyndp4bky6msb4k6gcxpgysz7rir545d5afrfi4gbk1rpfi"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; };
ChIPXpress = derive2 { name="ChIPXpress"; version="1.16.0"; sha256="19lx482jhh4h97nic57lk198a0x1xc51cnx79l9h6r9r86ncxl0w"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; };
@ -350,6 +349,7 @@ in with self; {
KCsmart = derive2 { name="KCsmart"; version="2.32.0"; sha256="1ppvnd6rs4bwxjr6qhhz5wd4fx9r3xg2mr0zjs8y7srm3k6k2djl"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
KEGGREST = derive2 { name="KEGGREST"; version="1.14.1"; sha256="0dcdmbkqxy0d4gg8lqlaflmjljzl9h1p2mlxnmvwgx34vnpx386y"; depends=[Biostrings httr png]; };
KEGGgraph = derive2 { name="KEGGgraph"; version="1.32.0"; sha256="1r5ib197swfr38ia0g23d78kx0dkgjssjmi5fc18z3nfparhkxdq"; depends=[graph XML]; };
KEGGlincs = derive2 { name="KEGGlincs"; version="1.0.0"; sha256="0jrfzx0s3xkk19pzm7iffk2cx6njihrclrn3iw2d3zvd015k47l3"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO]; };
KEGGprofile = derive2 { name="KEGGprofile"; version="1.16.0"; sha256="1ir3vma3n9bh8bkym0h5p2s6wbi7cjsvlz99mc34nkzqn0jxm0yl"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; };
LBE = derive2 { name="LBE"; version="1.42.0"; sha256="103m1j86mlqrrjzy9w5zms0hksqjbn20jqnrf83fga4z958w32fa"; depends=[]; };
LEA = derive2 { name="LEA"; version="1.6.0"; sha256="1ckygk393awmd963g7jykmfzcpysgi4d29psc5iqdz0h2cxrczjd"; depends=[]; };
@ -736,6 +736,7 @@ in with self; {
cancerclass = derive2 { name="cancerclass"; version="1.18.0"; sha256="1zff6wz0529gc22c9bfnwa95xxadyhfbxjvr1b51w4zgms2bicfr"; depends=[binom Biobase]; };
casper = derive2 { name="casper"; version="2.8.0"; sha256="0ckqx8i7pgmjhznpw8pggc2f1147sd7vqhw2a4f0na9mv27l74iq"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
categoryCompare = derive2 { name="categoryCompare"; version="1.18.0"; sha256="0ppis6agdpccjg8bwr91axy770v67al93pg50zmk1rvbfl25b9gz"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; };
ccmap = derive2 { name="ccmap"; version="1.0.0"; sha256="1djajivpfz8cgdq5nnhyr48gvdq8igjqfkxbibw975y7ybsrc44z"; depends=[AnnotationDbi BiocInstaller ccdata data_table doParallel foreach xgboost]; };
ccrepe = derive2 { name="ccrepe"; version="1.10.0"; sha256="14y97n28jqj78xscprgbnlwq4abf1vks3ipmp0w9y1yjj0jk0xl2"; depends=[infotheo]; };
cellGrowth = derive2 { name="cellGrowth"; version="1.18.0"; sha256="1yxlcli3h35aw9nzffnpv4nby255bmlkrwcdh6rr7i04393qjpzc"; depends=[lattice locfit]; };
cellHTS2 = derive2 { name="cellHTS2"; version="2.38.0"; sha256="117g37rvi92i21mg2ifxy9dxilvgf52nz3f51jdlcgf1w5zvm3n1"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; };
@ -750,6 +751,7 @@ in with self; {
chroGPS = derive2 { name="chroGPS"; version="1.22.0"; sha256="0kq1dgik5dkhqb1as9zpwzpyhbw16c766vyn5all4frh0mpdiy0z"; depends=[Biobase changepoint cluster DPpackage GenomicRanges ICSNP MASS]; };
chromDraw = derive2 { name="chromDraw"; version="2.4.0"; sha256="0rzrcjzwqjb40l8yc25gscl6hnxwprrv738p46kmdh3a08ghxv5v"; depends=[GenomicRanges Rcpp]; };
chromPlot = derive2 { name="chromPlot"; version="1.2.0"; sha256="06wg345hkkpaq0m620sqgnwvk11qfkhn5yr8nyv9cbdbihqvg0if"; depends=[biomaRt GenomicRanges]; };
chromstaR = derive2 { name="chromstaR"; version="1.0.0"; sha256="1qyb07dsag64gspjk29nd3ppylzicsq7rnjafdfhs9pjqwv0vshf"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools S4Vectors]; };
cisPath = derive2 { name="cisPath"; version="1.14.0"; sha256="108d1m3d07zblij9wsz2l6bw226bvwwl8w0gq3wdxjmgyjj48jzi"; depends=[]; };
cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.12.0"; sha256="09bbqapri4vw9mdlch0hw6v49mxqbknrrj5q9ssyzhjhikz954sq"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; };
cleaver = derive2 { name="cleaver"; version="1.12.0"; sha256="0dnl7ihxhl640k91div133rz9kxa43wkvfyxkyqv31winymk0fy4"; depends=[Biostrings IRanges S4Vectors]; };

3141
pkgs/development/r-modules/cran-packages.nix
View File

File diff suppressed because it is too large Load Diff

557
pkgs/development/r-modules/default.nix
View File

@ -495,7 +495,6 @@ let
"fscaret"
"fSRM"
"gcmr"
"Geneland"
"GeoGenetix"
"geomorph"
"geoR"
@ -566,7 +565,6 @@ let
"plotSEMM"
"plsRbeta"
"plsRglm"
"pmg"
"PopGenReport"
"poppr"
"powerpkg"
@ -682,560 +680,17 @@ let
];
packagesToSkipCheck = [
"Rmpi" # tries to run MPI processes
"gmatrix" # requires CUDA runtime
"Rmpi" # tries to run MPI processes
"gmatrix" # requires CUDA runtime
"gputools" # requires CUDA runtime
"sprint" # tries to run MPI processes
"pbdMPI" # tries to run MPI processes
"sprint" # tries to run MPI processes
"pbdMPI" # tries to run MPI processes
];
# Packages which cannot be installed due to lack of dependencies or other reasons.
brokenPackages = [
"acs" # build is broken
"agRee" # depends on broken package BRugs-0.8-6
"aLFQ" # depends on broken package bio3d-2.3-1
"anamiR" # depends on broken package RMySQL-0.10.11
"AneuFinder" # depends on broken package Rhtslib-1.6.0
"animation" # build is broken
"anim_plots" # depends on broken package animation-2.4
"annmap" # depends on broken package RMySQL-0.10.9
"apaStyle" # depends on broken package gdtools-0.1.3
"apaTables" # depends on broken package OpenMx-2.7.4
"aptg" # depends on broken package brranching-0.2.0
"ArrayExpressHTS" # build is broken
"arrayQualityMetrics" # build is broken
"auRoc" # depends on broken package OpenMx-2.7.4
"bamsignals" # depends on broken package Rhtslib-1.6.0
"BatchQC" # build is broken
"bayesCL" # build is broken
"bayou" # depends on broken package animation-2.4
"bedr" # build is broken
"BETS" # build is broken
"BiGGR" # depends on broken package rsbml-2.30.0
"bio3d" # build is broken
"bioassayR" # depends on broken package ChemmineR-2.24.2
"bioCancer" # depends on broken package covr-2.2.2
"biomformat" # depends on broken package r-rhdf5-2.16.0
"biotools" # depends on broken package rpanel-1.1-3
"birte" # build is broken
"BiSEp" # build is broken
"BLCOP" # depends on broken package Rsymphony-0.1-26
"BMhyd" # depends on broken package animation-2.4
"BNSP" # build is broken
"BPEC" # depends on broken package animation-2.4
"BrailleR" # depends on broken package gridGraphics-0.1-5
"brainGraph" # build is broken
"brranching" # depends on broken package animation-2.4
"brr" # build is broken
"BRugs" # build is broken
"CADStat" # build is broken
"CampaR1" # depends on broken package r-bio3d-2.3-1
"canceR" # build is broken
"CardinalWorkflows" # build is broken
"CARrampsOcl" # depends on broken package OpenCL-0.1-3
"categoryCompare" # depends on broken package RCytoscape-1.21.1
"Causata" # depends on broken package RMySQL-0.10.9
"cdcfluview" # depends on broken package V8-1.2
"CexoR" # depends on broken package Rhtslib-1.6.0
"ChAMP" # depends on broken package goseq-1.26.0
"ChemmineDrugs" # depends on broken package ChemmineR-2.24.2
"ChemmineR" # build is broken
"chinese_misc" # build is broken
"ChIPQC" # depends on broken package r-DiffBind-2.0.9
"ChIPXpress" # build is broken
"ChIPXpressData" # build is broken
"choroplethr" # depends on broken package acs-2.0
"CHRONOS" # build is broken
"cleanEHR" # build is broken
"clickR" # depends on broken package gdtools-0.1.3
"clpAPI" # build is broken
"CNEr" # build is broken
"colormap" # depends on broken package V8-1.2
"colorscience" # build is broken
"compendiumdb" # depends on broken package RMySQL-0.10.9
"CONFESS" # depends on broken package r-flowCore-1.38.2
"CONS" # build is broken
"convevol" # depends on broken package animation-2.4
"CountClust" # build is broken
"CountsEPPM" # build is broken
"COUSCOus" # depends on broken package r-bio3d-2.3-1
"covr" # build is broken
"cplexAPI" # build is broken
"Crossover" # build is broken
"CrypticIBDcheck" # build is broken
"csaw" # build is broken
"ctsem" # depends on broken package OpenMx-2.7.4
"cudaBayesreg" # build is broken
"cytofkit" # depends on broken package flowCore-1.38.2
"CytoML" # depends on broken package flowCore-1.40.6
"daff" # depends on broken package V8-1.2
"dagbag" # build is broken
"dagitty" # depends on broken package V8-1.2
"dagLogo" # depends on broken package MotIV-1.28.0
"DAISIE" # depends on broken package animation-2.4
"DataEntry" # build is broken
"dataMaid" # build is broken
"dataone" # build is broken
"datapack" # build is broken
"dbConnect" # depends on broken package RMySQL-0.10.9
"DBKGrad" # depends on broken package rpanel-1.1-3
"DCM" # build is broken
"DDD" # depends on broken package animation-2.4
"deBInfer" # depends on broken package PBSddesolve-1.12.2
"debrowser" # depends on broken package V8-1.4
"DecisionCurve" # build is broken
"DeepBlueR" # build is broken
"deepSNV" # build is broken
"DEGraph" # depends on broken package RCytoscape-1.21.1
"DEploid" # build is broken
"DiagrammeRsvg" # depends on broken package V8-1.2
"DiffBind" # build is broken
"diffHic" # depends on broken package r-csaw-1.6.1
"DirichletMultinomial" # build is broken
"diveRsity" # build is broken
"DmelSGI" # depends on broken package r-rhdf5-2.16.0
"docxtools" # build is broken
"DOQTL" # depends on broken package r-rhdf5-2.16.0
"DOT" # depends on broken package V8-1.2
"dynr" # build is broken
"ecospat" # depends on broken package MigClim-1.6
"EGAD" # depends on broken package arrayQualityMetrics-3.28.2
"eiR" # depends on broken package ChemmineR-2.24.2
"emg" # build is broken
"envlpaster" # build is broken
"erpR" # depends on broken package rpanel-1.1-3
"euroMix" # build is broken
"evobiR" # depends on broken package animation-2.4
"exifr" # build is broken
"ExperimentHubData" # build is broken
"exprso" # build is broken
"fastR" # build is broken
"fCCAC" # depends on broken package Rhtslib-1.6.0
"fdq" # depends on broken package gdtools-0.1.3
"Fgmutils" # depends on broken package gdtools-0.1.3
"flan" # build is broken
"flextable" # depends on broken package gdtools-0.1.4
"flowAI" # depends on broken package r-flowCore-1.38.2
"flowBeads" # depends on broken package r-flowCore-1.38.2
"flowBin" # depends on broken package r-flowCore-1.38.2
"flowCHIC" # depends on broken package r-flowCore-1.38.2
"flowClean" # depends on broken package r-flowCore-1.38.2
"flowClust" # depends on broken package r-flowCore-1.38.2
"flowCore" # build is broken
"flowDensity" # depends on broken package flowCore-1.38.2
"flowDiv" # depends on broken package r-flowCore-1.38.2
"flowFit" # depends on broken package r-flowCore-1.38.2
"flowFitExampleData" # depends on broken package r-flowCore-1.38.2
"flowFP" # depends on broken package r-flowCore-1.38.2
"flowMatch" # depends on broken package r-flowCore-1.38.2
"flowMeans" # depends on broken package r-flowCore-1.38.2
"flowMerge" # depends on broken package r-flowCore-1.38.2
"flowPeaks" # build is broken
"flowPloidy" # depends on broken package flowCore-1.40.6
"flowQB" # depends on broken package r-flowCore-1.38.2
"flowQ" # depends on broken package flowCore-1.38.2
"FlowSOM" # depends on broken package r-flowCore-1.38.2
"flowStats" # depends on broken package r-flowCore-1.38.2
"flowTrans" # depends on broken package r-flowCore-1.38.2
"flowType" # depends on broken package r-flowCore-1.38.2
"flowUtils" # depends on broken package r-flowCore-1.38.2
"flowViz" # depends on broken package r-flowCore-1.38.2
"flowVS" # depends on broken package r-flowCore-1.38.2
"flowWorkspace" # depends on broken package r-flowCore-1.38.2
"fmcsR" # depends on broken package ChemmineR-2.24.2
"fPortfolio" # depends on broken package Rsymphony-0.1-26
"fracprolif" # build is broken
"funModeling" # build is broken
"gahgu133acdf" # build is broken
"gahgu133bcdf" # build is broken
"gahgu133plus2cdf" # build is broken
"gahgu95av2cdf" # build is broken
"gahgu95bcdf" # build is broken
"gahgu95ccdf" # build is broken
"gahgu95dcdf" # build is broken
"gahgu95ecdf" # build is broken
"gamlss_demo" # depends on broken package rpanel-1.1-3
"gazepath" # build is broken
"gdtools" # build is broken
"GENE_E" # depends on broken package r-rhdf5-2.16.0
"GenoGAM" # build is broken
"genomation" # depends on broken package Rhtslib-1.6.0
"geojson" # depends on broken package r-protolite-1.5
"geojsonio" # depends on broken package V8-1.2
"geojsonlint" # depends on broken package V8-1.2
"gfcanalysis" # depends on broken package animation-2.4
"gfer" # depends on broken package V8-1.2
"ggcyto" # depends on broken package r-flowCore-1.38.2
"ggghost" # depends on broken package animation-2.4
"ggimage" # depends on broken package gridGraphics-0.1-5
"ggiraph" # depends on broken package gdtools-0.1.3
"ggiraphExtra" # depends on broken package gdtools-0.1.3
"ggseas" # build is broken
"gmapR" # build is broken
"gmatrix" # depends on broken package cudatoolkit-8.0.61
"gMCP" # build is broken
"gmDatabase" # depends on broken package RMySQL-0.10.9
"gmum_r" # build is broken
"googleformr" # build is broken
"goseq" # build is broken
"gpg" # build is broken
"gpuR" # build is broken
"gputools" # depends on broken package cudatoolkit-8.0.61
"GraphPAC" # build is broken
"greengenes13_5MgDb" # build is broken
"gridGraphics" # build is broken
"GSCA" # depends on broken package r-rhdf5-2.16.0
"GUIDE" # depends on broken package rpanel-1.1-3
"gunsales" # build is broken
"h2o" # build is broken
"h5vc" # depends on broken package r-rhdf5-2.16.0
"harrietr" # build is broken
"HDF5Array" # depends on broken package r-rhdf5-2.16.0
"healthyFlowData" # depends on broken package r-flowCore-1.38.2
"hexSticker" # depends on broken package gridGraphics-0.1-5
"HierO" # build is broken
"HilbertVisGUI" # build is broken
"HiPLARM" # build is broken
"hisse" # depends on broken package animation-2.4
"hoardeR" # depends on broken package Rhtslib-1.6.0
"homomorpheR" # depends on broken package sodium-0.4
"HTSeqGenie" # depends on broken package gmapR-1.16.0
"HTSSIP" # depends on broken package r-rhdf5-2.16.0
"idm" # depends on broken package animation-2.4
"ifaTools" # depends on broken package OpenMx-2.7.4
"IHW" # depends on broken package r-lpsymphony-1.0.2
"IHWpaper" # depends on broken package r-lpsymphony-1.0.2
"IlluminaHumanMethylation450k_db" # build is broken
"immunoClust" # depends on broken package r-flowCore-1.38.2
"imputeR" # depends on broken package ridge-2.2
"intansv" # build is broken
"interactiveDisplay" # build is broken
"ionicons" # depends on broken package rsvg-1.0
"IONiseR" # depends on broken package r-rhdf5-2.16.0
"ITGM" # depends on broken package gdtools-0.1.3
"jpmesh" # depends on broken package V8-1.2
"js" # depends on broken package V8-1.2
"jsonld" # depends on broken package V8-1.2
"jsonvalidate" # depends on broken package V8-1.2
"KoNLP" # build is broken
"largeList" # build is broken
"largeVis" # build is broken
"lavaan_shiny" # depends on broken package OpenMx-2.7.10
"lawn" # depends on broken package V8-1.2
"LCMCR" # build is broken
"LeArEst" # depends on broken package opencpu-1.6.1
"lefse" # build is broken
"lfe" # build is broken
"lgcp" # depends on broken package rpanel-1.1-3
"Libra" # build is broken
"libsoc" # build is broken
"link2GI" # depends on broken package r-sf-0.3-4
"LinRegInteractive" # depends on broken package rpanel-1.1-3
"liquidSVM" # build is broken
"littler" # build is broken
"LowMACA" # depends on broken package MotIV-1.28.0
"lpsymphony" # build is broken
"lvnet" # depends on broken package OpenMx-2.7.4
"MafDb_1Kgenomes_phase3_hs37d5" # build is broken
"mafs" # build is broken
"magick" # build is broken
"maGUI" # build is broken
"mapr" # depends on broken package V8-1.2
"mar1s" # build is broken
"MatrixRider" # depends on broken package CNEr-1.8.3
"MBESS" # depends on broken package OpenMx-2.7.4
"mBvs" # build is broken
"mcaGUI" # build is broken
"mcPAFit" # build is broken
"mdsr" # depends on broken package RMySQL-0.10.9
"Mediana" # depends on broken package gdtools-0.1.3
"melviewr" # build is broken
"MeSH_Hsa_eg_db" # build is broken
"MeSH_Mmu_eg_db" # build is broken
"meshr" # depends on broken package r-MeSH.Hsa.eg.db-1.6.0
"Metab" # build is broken
"metagear" # build is broken
"MetaIntegrator" # depends on broken package RMySQL-0.10.9
"metaSEM" # depends on broken package OpenMx-2.7.4
"methylKit" # depends on broken package Rhtslib-1.6.0
"MigClim" # build is broken
"minimist" # depends on broken package V8-1.2
"miscF" # depends on broken package BRugs-0.8-6
"mixlink" # build is broken
"MLSeq" # build is broken
"mmnet" # build is broken
"MODIStsp" # build is broken
"MonetDBLite" # build is broken
"mongolite" # build is broken
"monogeneaGM" # depends on broken package animation-2.4
"MonoPhy" # depends on broken package animation-2.4
"motifbreakR" # depends on broken package MotIV-1.28.0
"motifStack" # depends on broken package MotIV-1.28.0
"MotIV" # build is broken
"mptools" # depends on broken package animation-2.4
"mrMLM" # build is broken
"mRMRe" # build is broken
"mscstexta4r" # build is broken
"mscsweblm4r" # build is broken
"MSeasyTkGUI" # build is broken
"MSGFgui" # depends on broken package MSGFplus-1.6.2
"MSGFplus" # build is broken
"multiDimBio" # depends on broken package gridGraphics-0.1-5
"multipanelfigure" # depends on broken package gridGraphics-0.1-5
"munsellinterpol" # build is broken
"mutossGUI" # build is broken
"mvMORPH" # depends on broken package animation-2.4
"mvst" # build is broken
"ncdfFlow" # depends on broken package r-flowCore-1.38.2
"NCIgraph" # depends on broken package RCytoscape-1.21.1
"ndjson" # build is broken
"ndtv" # depends on broken package animation-2.4
"NetRep" # depends on broken package r-RhpcBLASctl-0.15-148
"networkBMA" # build is broken
"nlts" # build is broken
"normr" # depends on broken package Rhtslib-1.6.0
"NORRRM" # build is broken
"odbc" # build is broken
"officer" # depends on broken package gdtools-0.1.3
"OpenCL" # build is broken
"opencpu" # depends on broken package r-protolite-1.5
"openCyto" # depends on broken package r-flowCore-1.38.2
"OpenMx" # build is broken
"optbdmaeAT" # build is broken
"optBiomarker" # depends on broken package rpanel-1.1-3
"optrcdmaeAT" # build is broken
"ora" # depends on broken package ROracle-1.3-1
"OUwie" # depends on broken package animation-2.4
"PAA" # build is broken
"paleotree" # depends on broken package animation-2.4
"PathoStat" # depends on broken package BatchQC-1.2.1
"PathSelectMP" # build is broken
"PatternClass" # build is broken
"PBD" # depends on broken package animation-2.4
"PBSddesolve" # build is broken
"PBSmapping" # build is broken
"pcadapt" # depends on broken package vcfR-1.4.0
"pcaL1" # build is broken
"pcaPA" # build is broken
"pcrsim" # build is broken
"pdfsearch" # build is broken
"pdftools" # build is broken
"pd_genomewidesnp_6" # build is broken
"permGPU" # build is broken
"PGA" # build is broken
"PGPC" # depends on broken package ChemmineR-2.24.2
"ph2bye" # depends on broken package animation-2.4
"PharmacoGx" # build is broken
"PhyInformR" # depends on broken package animation-2.4
"phylocurve" # depends on broken package animation-2.4
"phyloseq" # depends on broken package r-rhdf5-2.16.0
"PhySortR" # depends on broken package animation-2.4
"phytools" # depends on broken package animation-2.4
"PICS" # build is broken
"PING" # depends on broken package PICS-2.16.0
"plateCore" # depends on broken package r-flowCore-1.38.2
"plfMA" # build is broken
"plink" # build is broken
"podkat" # build is broken
"PottsUtils" # depends on broken package BRugs-0.8-6
"powell" # build is broken
"pqsfinder" # depends on broken package r-flowCore-1.38.2
"prebs" # depends on broken package r-rhdf5-2.16.0
"PREDAsampledata" # depends on broken package gahgu133plus2cdf-2.2.1
"predictionInterval" # depends on broken package OpenMx-2.7.4
"pRoloc" # build is broken
"pRolocGUI" # build is broken
"proteoQC" # build is broken
"protolite" # build is broken
"prototest" # build is broken
"PSAboot" # build is broken
"psbcGroup" # build is broken
"PythonInR" # build is broken
"qcmetrics" # build is broken
"QFRM" # build is broken
"qrqc" # build is broken
"qtbase" # build is broken
"qtpaint" # build is broken
"qtutils" # build is broken
"QUALIFIER" # depends on broken package r-flowCore-1.38.2
"QuartPAC" # build is broken
"QuasR" # build is broken
"QUBIC" # build is broken
"QVM" # build is broken
"raincpc" # build is broken
"rainfreq" # build is broken
"RAM" # depends on broken package animation-2.4
"RamiGO" # depends on broken package RCytoscape-1.21.1
"randomcoloR" # depends on broken package V8-1.2
"randstr" # build is broken
"RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76
"RAppArmor" # build is broken
"raptr" # depends on broken package PBSmapping-2.69.76
"RbioRXN" # depends on broken package ChemmineR-2.24.2
"Rblpapi" # build is broken
"RCAS" # depends on broken package Rhtslib-1.6.0
"Rchemcpp" # depends on broken package ChemmineR-2.24.2
"rchess" # depends on broken package V8-1.2
"RchivalTag" # depends on broken package PBSmapping-2.69.76
"RchyOptimyx" # depends on broken package r-flowCore-1.38.2
"RcmdrPlugin_FuzzyClust" # build is broken
"RcmdrPlugin_PcaRobust" # build is broken
"Rcpi" # depends on broken package ChemmineR-2.24.2
"Rcplex" # build is broken
"RcppAPT" # build is broken
"RcppGetconf" # build is broken
"RcppOctave" # build is broken
"RcppRedis" # build is broken
"rcqp" # build is broken
"rcrypt" # build is broken
"RCytoscape" # build is broken
"rdataretriever" # build is broken
"rDEA" # build is broken
"RDieHarder" # build is broken
"REBayes" # depends on broken package Rmosek-1.2.5.1
"recluster" # depends on broken package animation-2.4
"redland" # build is broken
"remoter" # build is broken
"repijson" # depends on broken package V8-1.2
"replicationInterval" # depends on broken package OpenMx-2.7.4
"ReporteRs" # depends on broken package gdtools-0.1.3
"ReQON" # depends on broken package seqbias-1.20.0
"RforProteomics" # depends on broken package interactiveDisplay-1.10.2
"rgbif" # depends on broken package V8-1.2
"Rgnuplot" # build is broken
"rgp" # build is broken
"rgpui" # depends on broken package rgp-0.4-1
"rgsepd" # depends on broken package goseq-1.26.0
"rhdf5" # build is broken
"RhpcBLASctl" # build is broken
"Rhtslib" # build is broken
"ridge" # build is broken
"rjade" # depends on broken package V8-1.2
"rJPSGCS" # build is broken
"RKEEL" # depends on broken package RKEELjars-1.0.15
"RKEELjars" # build is broken
"Rknots" # depends on broken package r-bio3d-2.3-1
"rLindo" # build is broken
"rlo" # depends on broken package PythonInR-0.1-3
"RMallow" # build is broken
"rmapshaper" # depends on broken package V8-1.2
"rMAT" # build is broken
"Rmosek" # build is broken
"rmumps" # build is broken
"RMySQL" # build is broken
"rnaturalearth" # depends on broken package sf-0.4-1
"RnavGraph" # build is broken
"rnetcarto" # build is broken
"ROI_plugin_clp" # depends on broken package clpAPI-1.2.7
"ROI_plugin_cplex" # depends on broken package Rcplex-0.3-3
"ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-26
"ROracle" # build is broken
"RPA" # depends on broken package r-rhdf5-2.16.0
"RPANDA" # depends on broken package animation-2.4
"rpanel" # build is broken
"rpg" # build is broken
"Rphylopars" # depends on broken package animation-2.4
"Rpoppler" # build is broken
"RQuantLib" # build is broken
"Rsampletrees" # build is broken
"RSAP" # build is broken
"rsbml" # build is broken
"RSCABS" # build is broken
"rscala" # build is broken
"Rsomoclu" # build is broken
"rsparkling" # depends on broken package h2o-3.10.3.6
"rsvg" # build is broken
"Rsymphony" # build is broken
"rtable" # depends on broken package gdtools-0.1.3
"rTANDEM" # build is broken
"Rtextrankr" # build is broken
"rUnemploymentData" # depends on broken package acs-2.0
"rvg" # depends on broken package gdtools-0.1.3
"RVideoPoker" # depends on broken package rpanel-1.1-3
"rzmq" # build is broken
"s2" # build is broken
"sapFinder" # build is broken
"sbrl" # build is broken
"SC3" # depends on broken package scater-1.2.0
"scater" # depends on broken package r-rhdf5-2.16.0
"scran" # depends on broken package r-rhdf5-2.16.0
"SDD" # depends on broken package rpanel-1.1-3
"seasonal" # build is broken
"seasonalview" # build is broken
"Sejong" # build is broken
"SemiCompRisks" # build is broken
"semPlot" # depends on broken package OpenMx-2.7.10
"semtree" # depends on broken package OpenMx-2.7.4
"seqbias" # build is broken
"SeqGrapheR" # build is broken
"seqTools" # build is broken
"sf" # build is broken
"shazam" # build is broken
"shinyTANDEM" # build is broken
"SICtools" # build is broken
"SigTree" # depends on broken package r-rhdf5-2.16.0
"SimInf" # build is broken
"simsalapar" # build is broken
"smapr" # depends on broken package r-rhdf5-2.16.0
"SMITE" # depends on broken package goseq-1.26.0
"SnakeCharmR" # build is broken
"sodium" # build is broken
"soilphysics" # depends on broken package rpanel-1.1-3
"sortinghat" # build is broken
"spdynmod" # depends on broken package animation-2.4
"spocc" # depends on broken package V8-1.2
"spongecake" # build is broken
"srd" # depends on broken package animation-2.4
"SSDM" # build is broken
"stagePop" # depends on broken package PBSddesolve-1.12.2
"Starr" # build is broken
"stream" # depends on broken package animation-2.4
"streamMOA" # depends on broken package animation-2.4
"stremr" # build is broken
"subspaceMOA" # depends on broken package animation-2.4
"svglite" # depends on broken package gdtools-0.1.3
"sybilSBML" # build is broken
"SymTS" # build is broken
"synthACS" # depends on broken package acs-2.0
"tcpl" # depends on broken package RMySQL-0.10.9
"TDA" # build is broken
"TED" # depends on broken package animation-2.4
"tesseract" # build is broken
"texPreview" # depends on broken package magick-0.4
"textreadr" # build is broken
"textTinyR" # build is broken
"TFBSTools" # depends on broken package CNEr-1.8.3
"tilegramsR" # depends on broken package sf-0.4-1
"TKF" # depends on broken package animation-2.4
"tmap" # depends on broken package V8-1.2
"tmaptools" # depends on broken package V8-1.2
"tofsims" # build is broken
"toxboot" # depends on broken package RMySQL-0.10.9
"TransView" # build is broken
"treatSens" # build is broken
"treeplyr" # depends on broken package animation-2.4
"TSMySQL" # depends on broken package RMySQL-0.10.9
"uaparserjs" # depends on broken package V8-1.2
"UBCRM" # build is broken
"uHMM" # build is broken
"umx" # depends on broken package OpenMx-2.7.4
"userfriendlyscience" # depends on broken package OpenMx-2.7.4
"V8" # build is broken
"VariantTools" # depends on broken package gmapR-1.16.0
"VBmix" # build is broken
"vcfR" # build is broken
"vdiffr" # depends on broken package gdtools-0.1.3
"vmsbase" # depends on broken package PBSmapping-2.69.76
"wallace" # depends on broken package V8-1.2
"wand" # build is broken
"WebGestaltR" # depends on broken package PythonInR-0.1-3
"webp" # build is broken
"wordbankr" # depends on broken package RMySQL-0.10.9
"x13binary" # build is broken
"x_ent" # depends on broken package r-protolite-1.5
"xps" # build is broken
"xslt" # build is broken
"zoon" # build is broken
"gputools" # depends on non-free cudatoolkit-8.0.61
"gmatrix" # depends on non-free cudatoolkit-8.0.61
];
otherOverrides = old: new: {

6
pkgs/development/tools/analysis/spin/default.nix
View File

@ -7,15 +7,15 @@ let
in stdenv.mkDerivation rec {
name = "spin-${version}";
version = "6.4.5";
version = "6.4.6";
url-version = stdenv.lib.replaceChars ["."] [""] version;
src = fetchurl {
# The homepage is behind CloudFlare anti-DDoS protection, which blocks cURL.
# Dropbox mirror from developers:
# https://www.dropbox.com/sh/fgzipzp4wpo3qc1/AADZPqS4aoR-pjNF6OQXRLQHa
url = "https://www.dropbox.com/sh/fgzipzp4wpo3qc1/AAANRpxsSyWC7iHZB-XgBwJFa/spin645.tar.gz?raw=1";
sha256 = "0x8qnwm2xa8f176c52mzpvnfzglxs6xgig7bcgvrvkb3xf114224";
url = "https://www.dropbox.com/sh/fgzipzp4wpo3qc1/AAA-vBeJ7xty-CDZgk7OB58Ta/spin646.tar.gz?raw=1";
sha256 = "1n33qzlb7g30vhr5yxssw210b2m0242y9j21c7fqpn9z6b0rbhjp";
};
nativeBuildInputs = [ makeWrapper ];

7
pkgs/development/tools/misc/ccache/default.nix
View File

@ -2,15 +2,18 @@
let ccache = stdenv.mkDerivation rec {
name = "ccache-${version}";
version = "3.2.5";
version = "3.3.4";
src = fetchurl {
sha256 = "11db1g109g0g5si0s50yd99ja5f8j4asxb081clvx78r9d9i2w0i";
sha256 = "0ks0vk408mdppfbk8v38p46fqx3p30r9a9cwiia43373i7rmpw94";
url = "mirror://samba/ccache/${name}.tar.xz";
};
buildInputs = [ zlib ];
# non to be fail on filesystems with unconventional blocksizes (zfs on Hydra?)
patches = [ ./skip-fs-dependent-test.patch ];
postPatch = ''
substituteInPlace Makefile.in --replace 'objs) $(extra_libs)' 'objs)'
'';

43
pkgs/development/tools/misc/ccache/skip-fs-dependent-test.patch Normal file
View File

@ -0,0 +1,43 @@
--- ccache-3.3.4.org/test.sh 2017-02-17 21:28:53.000000000 +0000
+++ ccache-3.3.4/test.sh 2017-07-01 18:38:00.523403023 +0100
@@ -2631,23 +2631,23 @@
$CCACHE -F 0 -M 256K >/dev/null
$CCACHE -c >/dev/null
# floor(0.8 * 4) = 3
- expect_file_count 3 '*.o' $CCACHE_DIR
- expect_file_count 3 '*.d' $CCACHE_DIR
- expect_file_count 3 '*.stderr' $CCACHE_DIR
- expect_stat 'files in cache' 9
- expect_stat 'cleanups performed' 1
- for i in 3 4 5; do
- file=$CCACHE_DIR/a/result$i-4017.o
- if [ ! -f $file ]; then
- test_failed "File $file removed when it shouldn't"
- fi
- done
- for i in 0 1 2 6 7 8 9; do
- file=$CCACHE_DIR/a/result$i-4017.o
- if [ -f $file ]; then
- test_failed "File $file not removed when it should"
- fi
- done
+ #expect_file_count 3 '*.o' $CCACHE_DIR
+ #expect_file_count 3 '*.d' $CCACHE_DIR
+ #expect_file_count 3 '*.stderr' $CCACHE_DIR
+ #expect_stat 'files in cache' 9
+ #expect_stat 'cleanups performed' 1
+ #for i in 3 4 5; do
+ # file=$CCACHE_DIR/a/result$i-4017.o
+ # if [ ! -f $file ]; then
+ # test_failed "File $file removed when it shouldn't"
+ # fi
+ #done
+ #for i in 0 1 2 6 7 8 9; do
+ # file=$CCACHE_DIR/a/result$i-4017.o
+ # if [ -f $file ]; then
+ # test_failed "File $file not removed when it should"
+ # fi
+ #done
# -------------------------------------------------------------------------
TEST "Automatic cache cleanup"

11
pkgs/development/tools/misc/gede/build.patch
View File

@ -1,11 +0,0 @@
--- a/build.py 2017-01-16 21:12:43.000000000 +0100
+++ b/build.py 2017-02-26 22:03:11.394625315 +0100
@@ -71,7 +71,7 @@
if do_build:
if not os.path.exists("Makefile"):
print("Generating makefile")
- if subprocess.call(['qmake-qt4']):
+ if subprocess.call(['qmake']):
exit(1)
print("Compiling (please wait)")

30
pkgs/development/tools/misc/gede/default.nix
View File

@ -1,24 +1,29 @@
{stdenv, fetchurl, ctags, qt4, python}:
{ stdenv, fetchurl, makeWrapper, python, qt4, ctags, gdb }:
stdenv.mkDerivation rec {
version = "2.0.3";
name = "gede-${version}";
version = "2.0.4";
src = fetchurl {
url = "http://gede.acidron.com/uploads/source/${name}.tar.xz";
sha256 = "1znlmkjgrmjl79q73xaa9ybp1xdc3k4h4ynv3jj5z8f92gjnj3kk";
sha256 = "0ip86ss35sc330p4aykv5qj74jbdwh38i928w1bxb6g3w0xmfqba";
};
buildInputs = [ ctags qt4 python ];
patches = [ ./build.patch ];
nativeBuildInputs = [ makeWrapper python ];
unpackPhase = ''
tar xf ${src}
cd ${name}
buildInputs = [ qt4 ];
postPatch = ''
sed -i build.py -e 's,qmake-qt4,qmake,'
'';
buildPhase = ":";
installPhase = ''
python build.py install --prefix="$out"
wrapProgram $out/bin/gede \
--prefix PATH : ${stdenv.lib.makeBinPath [ ctags gdb ]}
'';
configurePhase = "";
buildPhase = "";
installPhase = "./build.py install --prefix=$out";
meta = with stdenv.lib; {
description = "Graphical frontend (GUI) to GDB";
@ -28,4 +33,3 @@ stdenv.mkDerivation rec {
maintainers = with maintainers; [ juliendehos ];
};
}

4
pkgs/development/tools/misc/yodl/default.nix
View File

@ -2,14 +2,14 @@
stdenv.mkDerivation rec {
name = "yodl-${version}";
version = "3.08.02";
version = "4.01.00";
nativeBuildInputs = [ icmake ];
buildInputs = [ perl ];
src = fetchFromGitHub {
sha256 = "0z4pjrl4bq03fxc50c9h0bnc90vqn5c2dy830mjyzjrn1ms3i003";
sha256 = "1aahwmj4gmf59lrij2373lkgfj77i3ghdas9c7iqrjwaizb0430p";
rev = version;
repo = "yodl";
owner = "fbb-git";

14
pkgs/development/tools/ocaml/js_of_ocaml/default.nix
View File

@ -1,9 +1,9 @@
{ stdenv, fetchurl, ocaml, findlib, ocaml_lwt, menhir, ocsigen_deriving, ppx_deriving, camlp4, ocamlbuild
, cmdliner, tyxml, reactivedata, cppo, which, base64, uchar
{ stdenv, fetchurl, ocaml, findlib, lwt, menhir, ocsigen_deriving, ppx_deriving, camlp4, ocamlbuild
, cmdliner, tyxml, reactivedata, cppo, which, base64, uchar, yojson
}:
let version = if stdenv.lib.versionAtLeast ocaml.version "4.02"
then "2.8.3" else "2.7";
then "2.8.4" else "2.7";
in
stdenv.mkDerivation {
@ -12,15 +12,15 @@ stdenv.mkDerivation {
url = "https://github.com/ocsigen/js_of_ocaml/archive/${version}.tar.gz";
sha256 = {
"2.7" = "1dali1akyd4zmkwav0d957ynxq2jj6cc94r4xiaql7ca89ajz4jj";
"2.8.3" = "0xrw215w5saqdcdd9ipjhvg8f982z63znsds9ih445s3jr49szm7";
"2.8.4" = "098ph50s9kqw6rc3qjn39zv9b5swdf4qr44afwqfkkjgjs5d7vbl";
}."${version}";
};
buildInputs = [ ocaml findlib menhir ocsigen_deriving ocamlbuild
cmdliner reactivedata cppo which base64 ]
++ stdenv.lib.optional (stdenv.lib.versionAtLeast ocaml.version "4.02") tyxml;
propagatedBuildInputs = [ ocaml_lwt camlp4 ppx_deriving ]
++ stdenv.lib.optional (version == "2.8.3") uchar;
++ stdenv.lib.optionals (stdenv.lib.versionAtLeast ocaml.version "4.02") [ yojson tyxml ];
propagatedBuildInputs = [ lwt camlp4 ppx_deriving ]
++ stdenv.lib.optional (version == "2.8.4") uchar;
patches = [ ./Makefile.conf.diff ];

4
pkgs/development/tools/ocaml/utop/default.nix
View File

@ -2,6 +2,10 @@
, lambdaTerm, ocaml_lwt, camomile, zed, cppo, ppx_tools, makeWrapper
}:
if !stdenv.lib.versionAtLeast ocaml.version "4.02"
then throw "utop is not available for OCaml ${ocaml.version}"
else
stdenv.mkDerivation rec {
version = "1.19.3";
name = "utop-${version}";

11
pkgs/games/factorio/default.nix
View File

@ -10,7 +10,7 @@ assert releaseType == "alpha" || releaseType == "headless" || releaseType == "de
with stdenv.lib;
let
version = if releaseType != "demo" then "0.15.16" else "0.14.23";
version = if releaseType != "demo" then "0.15.26" else "0.15.25";
arch = if stdenv.system == "x86_64-linux" then {
inUrl = "linux64";
@ -23,13 +23,12 @@ let
authenticatedFetch = callPackage ./fetch.nix { inherit username password; };
fetch = rec {
extension = if releaseType != "demo" then "tar.xz" else "tar.gz";
url = "https://www.factorio.com/get-download/${version}/${releaseType}/${arch.inUrl}";
name = "factorio_${releaseType}_${arch.inTar}-${version}.${extension}";
name = "factorio_${releaseType}_${arch.inTar}-${version}.tar.xz";
x64 = {
headless = fetchurl { inherit name url; sha256 = "0ig0nrvqllb9294qn2ci5j5s31ycsjn23bp6hc633xqkgfmklmic"; };
alpha = authenticatedFetch { inherit name url; sha256 = "0bf0z6fi0cpbq487hz4sz8ljapchzhld01sj767wsldakjfkm9g9"; };
demo = fetchurl { inherit name url; sha256 = "10a2lwmspqviwgymn3zhjgpiynsa6dplgnikdirma5sl2hhcfb6s"; };
headless = fetchurl { inherit name url; sha256 = "1nblfff1m5wgp177l508y94n61lga3palhzw4frp2vd98sdp7gqk"; };
alpha = authenticatedFetch { inherit name url; sha256 = "0g7k58h15q4n9wxf96rx72w340xpdbj8k1faaxixrfrfx8bnmsls"; };
demo = fetchurl { inherit name url; sha256 = "1qz6g8mf221ic663zk92l6rs77ggfydaw2d8g2s7wy0j9097qbsl"; };
};
i386 = {
headless = abort "Factorio 32-bit headless binaries are not available for download.";

120
pkgs/misc/gnash/default.nix Normal file
View File

@ -0,0 +1,120 @@
{ stdenv, fetchgit, autoreconfHook
, pkgconfig, libtool, boost, SDL
, glib, pango, gettext, curl, xorg
, libpng, libjpeg, giflib, speex, atk
# renderers
, enableAGG ? true, agg ? null
, enableCairo ? false, cairo ? null
, enableOpenGL ? false, mesa ? null
# GUI toolkits
, enableGTK ? true, gtk2 ? null, gnome2 ? null, gnome3 ? null
, enableSDL ? false
, enableQt ? false, qt4 ? null
# media
, enableFFmpeg ? true, ffmpeg_2 ? null
, enableGstreamer ? false, gst-plugins-base ? null
, gst-plugins-ugly ? null
, gst-ffmpeg ? null
# misc
, enableJemalloc ? true, jemalloc ? null
, enableHwAccel ? true
, enablePlugins ? false, xulrunner ? null, npapi_sdk ? null
}:
with stdenv.lib;
let
available = x: x != null;
sound =
if enableFFmpeg then "ffmpeg" else
if enableGstreamer then "gst" else "none";
renderers = []
++ optional enableAGG "agg"
++ optional enableCairo "cairo"
++ optional enableOpenGL "opengl";
toolkits = []
++ optional enableGTK "gtk"
++ optional enableSDL "sdl"
++ optional enableQt "qt4";
in
# renderers
assert enableAGG -> available agg;
assert enableCairo -> available cairo;
assert enableOpenGL -> available mesa;
# GUI toolkits
assert enableGTK -> all available [ gtk2 gnome2.gtkglext gnome3.gconf ];
assert enableSDL -> available SDL;
assert enableQt -> available qt4;
# media libraries
assert enableFFmpeg -> available ffmpeg_2 ;
assert enableGstreamer -> all available [ gst-plugins-base gst-plugins-ugly gst-ffmpeg ];
# misc
assert enableJemalloc -> available jemalloc;
assert enableHwAccel -> available mesa;
assert enablePlugins -> all available [ xulrunner npapi_sdk ];
assert length toolkits == 0 -> throw "at least one GUI toolkit must be enabled";
assert length renderers == 0 -> throw "at least one renderer must be enabled";
stdenv.mkDerivation rec {
name = "gnash-${version}";
version = "0.8.11-2017-03-08";
src = fetchgit {
url = "git://git.sv.gnu.org/gnash.git";
rev = "8a11e60585db4ed6bc4eafadfbd9b3123ced45d9";
sha256 = "1qas084gc4s9cb2jbwi2s1h4hk7m92xmrsb596sd14h0i44dai02";
};
postPatch = ''
sed -i 's|jemalloc.h|jemalloc/jemalloc.h|' libbase/jemalloc_gnash.c
'';
nativeBuildInputs = [ autoreconfHook pkgconfig libtool ];
buildInputs = [
glib gettext boost curl SDL speex
xorg.libXmu xorg.libSM xorg.libXt
libpng libjpeg giflib pango atk
] ++ optional enableAGG agg
++ optional enableCairo cairo
++ optional enableOpenGL mesa
++ optional enableQt qt4
++ optional enableFFmpeg ffmpeg_2
++ optional enableJemalloc jemalloc
++ optional enableHwAccel mesa
++ optionals enablePlugins [ xulrunner npapi_sdk ]
++ optionals enableGTK [ gtk2 gnome2.gtkglext gnome3.gconf ]
++ optionals enableGstreamer [ gst-plugins-base gst-plugins-ugly gst-ffmpeg ];
configureFlags = with stdenv.lib; [
"--with-boost-incl=${boost.dev}/include"
"--with-boost-lib=${boost.out}/lib"
"--enable-renderer=${concatStringsSep "," renderers}"
"--enable-gui=${concatStringsSep "," toolkits}"
"--enable-media=${sound}"
"--with-npapi-install=prefix"
(enableFeature enablePlugins "plugins")
(enableFeature enableJemalloc "jemalloc")
(optionalString enableHwAccel "--enable-device=egl")
];
meta = {
homepage = https://savannah.gnu.org/projects/gnash;
description = "A flash (SWF) player and browser plugin";
license = licenses.gpl3;
maintainers = with maintainers; [ rnhmjoj ];
};
}

2
pkgs/os-specific/linux/firejail/default.nix
View File

@ -27,7 +27,7 @@ stdenv.mkDerivation {
'';
preBuild = ''
sed -e "s@/etc/@$out/etc/@g" -i Makefile
sed -e "s@/etc/@$out/etc/@g" -e "/chmod u+s/d" -i Makefile
'';
meta = {

3
pkgs/os-specific/linux/kbdlight/default.nix
View File

@ -13,7 +13,8 @@ stdenv.mkDerivation rec {
preConfigure = ''
substituteInPlace Makefile \
--replace /usr/local $out
--replace /usr/local $out \
--replace 4755 0755
'';
meta = with stdenv.lib; {

2
pkgs/os-specific/linux/kmod-debian-aliases/default.nix
View File

@ -5,7 +5,7 @@ stdenv.mkDerivation rec {
version = "22-1.1";
src = fetchurl {
url = "mirror://debian/pool/main/k/kmod/kmod_${version}.debian.tar.xz";
url = "http://snapshot.debian.org/archive/debian/20160404T220610Z/pool/main/k/kmod/kmod_${version}.debian.tar.xz";
sha256 = "0daap2n4bvjqcnksaayy6csmdb1px4r02w3xp36bcp6w3lbnqamh";
};

4
pkgs/servers/dns/bind/default.nix
View File

@ -3,14 +3,14 @@
assert enableSeccomp -> libseccomp != null;
let version = "9.10.5-P2"; in
let version = "9.11.1-P2"; in
stdenv.mkDerivation rec {
name = "bind-${version}";
src = fetchurl {
url = "http://ftp.isc.org/isc/bind9/${version}/${name}.tar.gz";
sha256 = "0cwrwlkfd6wnkw2ylkz2iyqlz73s3kf6q0fxsfwnh3fhxps2i90r";
sha256 = "19gyh7yij6cpvk5b199ghhns5wmsz67d2rpgvl91dbkm2m1wclxz";
};
outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ];

4
pkgs/servers/emby/default.nix
View File

@ -2,11 +2,11 @@
stdenv.mkDerivation rec {
name = "emby-${version}";
version = "3.2.20.0";
version = "3.2.22.0";
src = fetchurl {
url = "https://github.com/MediaBrowser/Emby/releases/download/${version}/Emby.Mono.zip";
sha256 = "0n5b40vl0dg2pd0j7rzbck62cji6ws91jgsh8r1maig9p00xmwv7";
sha256 = "0vc9391q1mi16k05yl5lqs2cmsgcid339pbqm9fyqzm33fk7d73r";
};
buildInputs = with pkgs; [

2
pkgs/servers/mail/mailman/default.nix
View File

@ -16,6 +16,8 @@ stdenv.mkDerivation rec {
installTargets = "doinstall"; # Leave out the 'update' target that's implied by 'install'.
makeFlags = [ "DIRSETGID=:" ];
meta = {
homepage = "http://www.gnu.org/software/mailman/";
description = "Free software for managing electronic mail discussion and e-newsletter lists";

4
pkgs/servers/news/leafnode/default.nix
View File

@ -10,6 +10,10 @@ stdenv.mkDerivation rec {
configureFlags = "--enable-runas-user=nobody";
prePatch = ''
substituteInPlace Makefile.in --replace 02770 0770
'';
preConfigure = ''
# configure uses id to check environment; we don't want this check
sed -re 's/^ID[=].*/ID="echo whatever"/' -i configure

4
pkgs/servers/nosql/redis/default.nix
View File

@ -1,12 +1,12 @@
{ stdenv, fetchurl, lua }:
stdenv.mkDerivation rec {
version = "3.2.8";
version = "3.2.9";
name = "redis-${version}";
src = fetchurl {
url = "http://download.redis.io/releases/${name}.tar.gz";
sha256 = "0b28d0fpkvf4m186gr2k53f1cqkccxzspmb959swrrhq7p177cv1";
sha256 = "09pzb468jfps1w7bx2xpsvalj5r3q8hav7l3s10f91xjhflwzakf";
};
buildInputs = [ lua ];

4
pkgs/servers/radicale/default.nix
View File

@ -2,11 +2,11 @@
pythonPackages.buildPythonApplication rec {
name = "radicale-${version}";
version = "1.1.2";
version = "1.1.4";
src = fetchurl {
url = "mirror://pypi/R/Radicale/Radicale-${version}.tar.gz";
sha256 = "1g20p3998f46ywda7swv0py63wjbrhvk0nrafajlbb6wgzxjmqpb";
sha256 = "17p0hayyw30pfb81xqvd7jhjm6yrk2dnbgvqagx1nqdsr89ar0ss";
};
propagatedBuildInputs = stdenv.lib.optionals (!pythonPackages.isPy3k) [

3
pkgs/servers/sql/mariadb/default.nix
View File

@ -18,8 +18,9 @@ common = rec { # attributes common to both builds
version = "10.1.21";
src = fetchurl {
url = "https://downloads.mariadb.org/interstitial/mariadb-${version}/source/mariadb-${version}.tar.gz";
url = "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz/from/http%3A//ftp.hosteurope.de/mirror/archive.mariadb.org/?serve";
sha256 = "144lcm5awcf0k6a7saqfr4p2kg8r5wbdhdm4cmn2m8hyg1an70as";
name = "mariadb-${version}.tar.gz";
};
prePatch = ''

6
pkgs/shells/oh-my-zsh/default.nix
View File

@ -4,13 +4,13 @@
{ stdenv, fetchgit }:
stdenv.mkDerivation rec {
version = "2017-05-03";
version = "2017-06-22";
name = "oh-my-zsh-${version}";
src = fetchgit {
url = "https://github.com/robbyrussell/oh-my-zsh";
rev = "291e96dcd034750fbe7473482508c08833b168e3";
sha256 = "0xy6ka5c8h3rh4n0436cn2f6zrbf959l2ypnnx5ddd0l723p1dzc";
rev = "d848c94804918138375041a9f800f401bec12068";
sha256 = "0mxmqkdpimwrskqjri3lp3haj1hzf583g7psnv34y3hyymzcx1h6";
};
pathsToLink = [ "/share/oh-my-zsh" ];

8
pkgs/tools/admin/google-cloud-sdk/default.nix
View File

@ -7,23 +7,23 @@ assert stdenv.system == "i686-linux" || stdenv.system == "x86_64-linux" || stden
stdenv.mkDerivation rec {
name = "google-cloud-sdk-${version}";
version = "159.0.0";
version = "161.0.0";
src =
if stdenv.system == "i686-linux" then
fetchurl {
url = "https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/${name}-linux-x86.tar.gz";
sha256 = "12mksd9fj1106zj6k2knlfc3knzm5kkf0s85l5l9zr6f7n0jabpd";
sha256 = "43a78a9d2c3ee9d9e50200b1e90512cd53ded40b56e05effe31fe9847b1bdd4c";
}
else if stdenv.system == "x86_64-darwin" then
fetchurl {
url = "https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/${name}-darwin-x86_64.tar.gz";
sha256 = "160zdf7rr2f43qv12yr9c682kk0dh3rlcdqzb2ahpqpajqmcz4qw";
sha256 = "0706dbea1279be2bc98a497d1bfed61a9cc29c305d908a376bcdb4403035b323";
}
else
fetchurl {
url = "https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/${name}-linux-x86_64.tar.gz";
sha256 = "0ai2rvk47gsb96k80w6wim04cjxyj5lhrg8kv6dgj53m81sqah2v";
sha256 = "7aa6094d1f9c87f4c2c4a6bdad6a1113aac5e72ea673e659d9acbb059dfd037e";
};
buildInputs = [python27 makeWrapper];

7
pkgs/tools/archivers/p7zip/default.nix
View File

@ -10,9 +10,10 @@ stdenv.mkDerivation rec {
};
patches = [
(fetchpatch {
url = "https://sources.debian.net/data/main/p/p7zip/16.02+dfsg-2/debian/patches/12-CVE-2016-9296.patch";
sha256 = "1i7099h27gmb9dv0lb7jnqfm504gs1c3129r6kvi94yb2gzrzk41";
(fetchpatch rec {
name = "CVE-2016-9296.patch";
url = "https://src.fedoraproject.org/cgit/rpms/p7zip.git/plain/${name}?id=4b3973f6a5d";
sha256 = "09wbkzai46bwm8zmplsz0m4jck3qn7snr68i9p1gsih300zidj0m";
})
];

2
pkgs/tools/filesystems/irods/default.nix
View File

@ -40,6 +40,8 @@ in rec {
-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath,$out/lib
-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-rpath,$out/lib
"
substituteInPlace cmake/server.cmake --replace SETUID ""
'';
meta = common.meta // {

2
pkgs/tools/misc/ddccontrol/default.nix
View File

@ -28,6 +28,8 @@ stdenv.mkDerivation {
oldPath+="{datadir}\/ddccontrol-db"
sed "s/$oldPath/$newPath/" <configure.ac.old >configure.ac
rm configure.ac.old
sed -e "s/chmod 4711/chmod 0711/" -i src/ddcpci/Makefile*
'';
meta = with stdenv.lib; {

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