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bcftools: init at 1.3.1

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mimadrid 2016-06-24 15:18:08 +02:00
parent 14feec44e4
commit d91d245f16
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2 changed files with 28 additions and 0 deletions
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26
pkgs/applications/science/biology/bcftools/default.nix Normal file
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@ -0,0 +1,26 @@
{ stdenv, fetchurl, zlib, htslib }:
stdenv.mkDerivation rec {
name = "${pname}-${version}";
pname = "bcftools";
version = "1.3.1";
src = fetchurl {
url = "https://github.com/samtools/${pname}/releases/download/${version}/${name}.tar.bz2";
sha256 = "095ry68vmz9q5s1scjsa698dhgyvgw5aicz24c19iwfbai07mhqj";
};
buildInputs = [ zlib ];
preBuild = ''
makeFlagsArray=("HSTDIR=${htslib}" "prefix=$out")
'';
meta = with stdenv.lib; {
description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants";
license = licenses.mit;
homepage = http://www.htslib.org/;
platforms = platforms.unix;
maintainers = [ maintainers.mimadrid ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -15883,6 +15883,8 @@ in
stdenv = overrideCC stdenv gcc49; stdenv = overrideCC stdenv gcc49;
}; };
bcftools = callPackage ../applications/science/biology/bcftools { };
emboss = callPackage ../applications/science/biology/emboss { }; emboss = callPackage ../applications/science/biology/emboss { };
htslib = callPackage ../development/libraries/science/biology/htslib { }; htslib = callPackage ../development/libraries/science/biology/htslib { };