Merge staging-next into staging

pkgs/applications/audio/ptcollab/default.nix

@@ -1,26 +1,40 @@
 { mkDerivation
-, lib, stdenv
+, lib
+, stdenv
 , fetchFromGitHub
+, nix-update-script
 , qmake
 , qtbase
 , qtmultimedia
 , libvorbis
+, rtmidi
 }:
 
 mkDerivation rec {
   pname = "ptcollab";
-  version = "0.3.5.1";
+  version = "0.4.0";
 
   src = fetchFromGitHub {
     owner = "yuxshao";
     repo = "ptcollab";
     rev = "v${version}";
-    sha256 = "1ahfxjm1chz8k65rs7rgn4s2bgippq58fjcxl8fr21pzn718wqf1";
+    sha256 = "1yfnf47saxxj17x0vyxihr343kp7gz3fashzky79j80sqlm6ng85";
   };
 
+  postPatch = ''
+    substituteInPlace src/editor.pro \
+      --replace '/usr/include/rtmidi' '${rtmidi}/include/rtmidi'
+  '';
+
   nativeBuildInputs = [ qmake ];
 
-  buildInputs = [ qtbase qtmultimedia libvorbis ];
+  buildInputs = [ qtbase qtmultimedia libvorbis rtmidi ];
+
+  passthru = {
+    updateScript = nix-update-script {
+      attrPath = pname;
+    };
+  };
 
   meta = with lib; {
     description = "Experimental pxtone editor where you can collaborate with friends";

pkgs/applications/networking/flexget/default.nix

@@ -2,11 +2,11 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "FlexGet";
-  version = "3.1.106";
+  version = "3.1.110";
 
   src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "f0ff300a1762d701b77eb16142dcc13d9d099bbed695f1e950392c1d1bb988eb";
+    sha256 = "e8642dcbbfe941e2d2def7bf2e28889082a78c1d041edb33dae180036832a96b";
   };
 
   postPatch = ''

pkgs/development/compilers/ghdl/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, gnat, zlib, llvm, lib
+{ stdenv, fetchFromGitHub, callPackage, gnat, zlib, llvm, lib
 , backend ? "mcode" }:
 
 assert backend == "mcode" || backend == "llvm";
@@ -17,6 +17,7 @@ stdenv.mkDerivation rec {
   LIBRARY_PATH = "${stdenv.cc.libc}/lib";
 
   buildInputs = [ gnat zlib ] ++ lib.optional (backend == "llvm") [ llvm ];
+  propagatedBuildInputs = lib.optionals (backend == "llvm") [ zlib ];
 
   preConfigure = ''
     # If llvm 7.0 works, 7.x releases should work too.
@@ -30,6 +31,15 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru = {
+    # run with either of
+    # nix-build -A ghdl-mcode.passthru.tests
+    # nix-build -A ghdl-llvm.passthru.tests
+    tests = {
+      simple = callPackage ./test-simple.nix { inherit backend; };
+    };
+  };
+
   meta = with lib; {
     homepage = "https://github.com/ghdl/ghdl";
     description = "VHDL 2008/93/87 simulator";

pkgs/development/compilers/ghdl/expected-output.txt

@@ -0,0 +1,8 @@
+simple-tb.vhd:71:5:@700ms:(report note): 32
+simple-tb.vhd:71:5:@900ms:(report note): 78
+simple-tb.vhd:71:5:@1100ms:(report note): 105
+simple-tb.vhd:71:5:@1300ms:(report note): 120
+simple-tb.vhd:71:5:@1500ms:(report note): 79
+simple-tb.vhd:71:5:@1700ms:(report note): 83
+simple-tb.vhd:71:5:@1900ms:(report note): 32
+simple-tb.vhd:75:1:@2100ms:(report note): All tests passed.

pkgs/development/compilers/ghdl/simple-tb.vhd

@@ -0,0 +1,78 @@
+library ieee;
+use IEEE.STD_LOGIC_1164.all;
+use ieee.numeric_std.all;
+
+library STD;
+use STD.textio.all;
+
+entity tb is
+end tb;
+
+architecture beh of tb is
+
+component simple
+port (
+    CLK, RESET : in std_ulogic;
+    DATA_OUT : out std_ulogic_vector(7 downto 0);
+    DONE_OUT : out std_ulogic
+);
+end component;
+
+signal data : std_ulogic_vector(7 downto 0) := "00100000";
+signal clk : std_ulogic;
+signal RESET : std_ulogic := '0';
+signal done : std_ulogic := '0';
+signal cyclecount : integer := 0;
+
+constant cycle_time_c : time := 200 ms;
+constant maxcycles : integer := 100;
+
+begin
+
+simple1 : simple
+port map (
+    CLK => clk,
+    RESET => RESET,
+    DATA_OUT => data,
+    DONE_OUT => done
+);
+
+clk_process : process
+begin
+    clk <= '0';
+    wait for cycle_time_c/2;
+    clk <= '1';
+    wait for cycle_time_c/2;
+end process;
+
+count_process : process(CLK)
+begin
+    if (CLK'event and CLK ='1') then
+    if (RESET = '1') then
+        cyclecount <= 0;
+    else
+        cyclecount <= cyclecount + 1;
+    end if;
+    end if;
+end process;
+
+test : process
+
+begin
+
+RESET <= '1';
+wait until (clk'event and clk='1');
+wait until (clk'event and clk='1');
+RESET <= '0';
+wait until (clk'event and clk='1');
+for cyclecnt in 1 to maxcycles loop
+    exit when done = '1';
+    wait until (clk'event and clk='1');
+    report integer'image(to_integer(unsigned(data)));
+end loop;
+wait until (clk'event and clk='1');
+
+report "All tests passed." severity NOTE;
+wait;
+end process;
+end beh;

pkgs/development/compilers/ghdl/simple.vhd

@@ -0,0 +1,45 @@
+library IEEE;
+use IEEE.STD_LOGIC_1164.all;
+use IEEE.NUMERIC_STD.ALL;
+use IEEE.STD_LOGIC_MISC.or_reduce;
+
+entity simple is
+
+port (
+    CLK, RESET : in std_ulogic;
+    DATA_OUT : out std_ulogic_vector(7 downto 0);
+    DONE_OUT : out std_ulogic
+);
+end simple;
+
+architecture beh of simple is
+
+signal data : std_ulogic_vector(7 downto 0);
+signal done: std_ulogic;
+
+begin
+
+proc_ctr : process(CLK)
+begin
+if (CLK = '1' and CLK'event) then
+    if (RESET = '1') then
+        data <= "01011111";
+        done <= '0';
+    else
+    case data is
+        when "00100000" =>  data <= "01001110";
+        when "01001110" =>  data <= "01101001";
+        when "01101001" =>  data <= "01111000";
+        when "01111000" =>  data <= "01001111";
+        when "01001111" =>  data <= "01010011";
+        when others =>  data <= "00100000";
+    end case;
+    done <= not or_reduce(data xor "01010011");
+    end if;
+end if;
+end process;
+
+DATA_OUT <= data;
+DONE_OUT <= done;
+
+end beh;

pkgs/development/compilers/ghdl/test-simple.nix

@@ -0,0 +1,23 @@
+{ stdenv, ghdl-llvm, ghdl-mcode, backend }:
+
+let
+  ghdl = if backend == "llvm" then ghdl-llvm else ghdl-mcode;
+in
+stdenv.mkDerivation {
+  name = "ghdl-test-simple";
+  meta.timeout = 300;
+  nativeBuildInputs = [ ghdl ];
+  buildCommand = ''
+    cp ${./simple.vhd} simple.vhd
+    cp ${./simple-tb.vhd} simple-tb.vhd
+    mkdir -p ghdlwork
+    ghdl -a --workdir=ghdlwork --ieee=synopsys simple.vhd simple-tb.vhd
+    ghdl -e --workdir=ghdlwork --ieee=synopsys -o sim-simple tb
+  '' + (if backend == "llvm" then ''
+    ./sim-simple --assert-level=warning > output.txt
+  '' else ''
+    ghdl -r --workdir=ghdlwork --ieee=synopsys tb > output.txt
+  '') + ''
+    diff output.txt ${./expected-output.txt} && touch $out
+  '';
+}

pkgs/development/python-modules/clevercsv/default.nix

@@ -0,0 +1,60 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, chardet
+, cleo
+, clikit
+, pandas
+, regex
+, tabview
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "clevercsv";
+  version = "0.6.7";
+  format = "setuptools";
+
+  src = fetchFromGitHub {
+    owner = "alan-turing-institute";
+    repo = "CleverCSV";
+    rev = "v${version}";
+    sha256 = "0j3959bji48pkp0vnk7yls5l75ywjl77jdkvzs62n5mi5lky88p9";
+  };
+
+  propagatedBuildInputs = [
+    chardet
+    cleo
+    clikit
+    pandas
+    regex
+    tabview
+  ];
+
+  pythonImportsCheck = [
+    "clevercsv"
+    "clevercsv.cparser"
+  ];
+
+  checkPhase = ''
+    # by linking the installed version the tests also have access to compiled native libraries
+    rm -r clevercsv
+    ln -s $out/${python.sitePackages}/clevercsv/ clevercsv
+    # their ci only runs unit tests, there are also integration and fuzzing tests
+    ${python.interpreter} -m unittest discover -v -f -s ./tests/test_unit
+  '';
+
+  meta = with lib; {
+    description = "CleverCSV is a Python package for handling messy CSV files";
+    longDescription = ''
+       CleverCSV is a Python package for handling messy CSV files. It provides
+       a drop-in replacement for the builtin CSV module with improved dialect
+       detection, and comes with a handy command line application for working
+       with CSV files.
+    '';
+    homepage = "https://github.com/alan-turing-institute/CleverCSV";
+    changelog = "https://github.com/alan-turing-institute/CleverCSV/blob/master/CHANGELOG.md";
+    license = licenses.mit;
+    maintainers = with maintainers; [ hexa ];
+  };
+}

pkgs/development/python-modules/deepdiff/default.nix

@@ -1,34 +1,43 @@
 { lib
 , buildPythonPackage
-, fetchPypi
-, mock
-, jsonpickle
-, mmh3
+, fetchFromGitHub
+, click
 , ordered-set
+, clevercsv
+, jsonpickle
 , numpy
 , pytestCheckHook
+, pyyaml
 }:
 
 buildPythonPackage rec {
   pname = "deepdiff";
-  version = "5.2.3";
+  version = "5.3.0";
+  format = "setuptools";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "ae2cb98353309f93fbfdda4d77adb08fb303314d836bb6eac3d02ed71a10b40e";
+  # pypi source does not contain all fixtures required for tests
+  src = fetchFromGitHub {
+    owner = "seperman";
+    repo = "deepdiff";
+    rev = version;
+    sha256 = "1izw2qpd93nj948zakamjn7q7dlmmr7sapg0c65hxvs0nmij8sl4";
   };
 
-  # # Extra packages (may not be necessary)
-  checkInputs = [
-    mock
-    numpy
-    pytestCheckHook
+  propagatedBuildInputs = [
+    click
+    ordered-set
   ];
 
-  propagatedBuildInputs = [
+  pythonImportsCheck = [
+    "deepdiff"
+  ];
+
+  checkInputs = [
+    clevercsv
     jsonpickle
-    mmh3
-    ordered-set
+    numpy
+    pytestCheckHook
+    pyyaml
   ];
 
   meta = with lib; {

pkgs/development/python-modules/tabview/default.nix

@@ -0,0 +1,31 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "tabview";
+  version = "1.4.4";
+  format = "setuptools";
+
+  # newest release only available as wheel on pypi
+  src = fetchFromGitHub {
+    owner = "TabViewer";
+    repo = "tabview";
+    rev = version;
+    sha256 = "1d1l8fhdn3w2zg7wakvlmjmgjh9lh9h5fal1clgyiqmhfix4cn4m";
+  };
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover
+  '';
+
+  meta = with lib; {
+    description = "Python curses command line CSV and tabular data viewer";
+    homepage = "https://github.com/TabViewer/tabview";
+    changelog = "https://github.com/TabViewer/tabview/blob/main/CHANGELOG.rst";
+    license = licenses.mit;
+    maintainers = with maintainers; [ hexa ];
+  };
+}

pkgs/tools/graphics/grim/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "grim";
-  version = "1.3.1";
+  version = "1.3.2";
 
   src = fetchFromGitHub {
     owner = "emersion";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0fjmjq0ws9rlblkcqxxw2lv7zvvyi618jqzlnz5z9zb477jwdfib";
+    sha256 = "sha256-71dmYENfPX8YHcTlR2F67EheoewicePMKm9/wPbmj9A=";
   };
 
   nativeBuildInputs = [

pkgs/tools/misc/macchina/default.nix

@@ -0,0 +1,29 @@
+{ lib, rustPlatform, fetchFromGitHub, installShellFiles }:
+
+rustPlatform.buildRustPackage rec {
+  pname = "macchina";
+  version = "0.6.9";
+
+  src = fetchFromGitHub {
+    owner = "Macchina-CLI";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-y23gpYDnYoiTJcNyWKslVenPTXcCrOvxq+0N9PjQN3g=";
+  };
+
+  cargoSha256 = "sha256-jfLj8kLBG6AeeYo421JCl1bMqWwOGiwQgv7AEomtFcY=";
+
+  nativeBuildInputs = [ installShellFiles ];
+
+  postInstall = ''
+    installShellCompletion target/completions/*.{bash,fish}
+  '';
+
+  meta = with lib; {
+    description = "A fast, minimal and customizable system information fetcher";
+    homepage = "https://github.com/Macchina-CLI/macchina";
+    changelog = "https://github.com/Macchina-CLI/macchina/releases/tag/v${version}";
+    license = with licenses; [ mit ];
+    maintainers = with maintainers; [ _414owen ];
+  };
+}

pkgs/tools/misc/watchexec/default.nix

@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "watchexec";
-  version = "1.15.0";
+  version = "1.15.1";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = version;
-    sha256 = "1b0ds04q4g8xcgwkziwb5hsi7v73w9y0prvhxz880zzh930652n2";
+    sha256 = "1xznhfljvsvc0ykv5h1wg31n93v96lvhbxfhavxivq3b0xh5vxrw";
   };
 
-  cargoSha256 = "0jpfgyz5l4fdb5cnqmadzjzrvc6dwgray4b0mx80pghpjw8a8qfb";
+  cargoSha256 = "00dampnsnpzmchjcn0j5zslx17i0qgrv99gq772n0683m1l2lfq3";
 
   nativeBuildInputs = [ installShellFiles ];
 

pkgs/tools/security/tor/default.nix

@@ -30,11 +30,11 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "tor";
-  version = "0.4.5.6";
+  version = "0.4.5.7";
 
   src = fetchurl {
     url = "https://dist.torproject.org/${pname}-${version}.tar.gz";
-    sha256 = "0cz78pjw2bc3kl3ziip1nhhbq89crv315rf1my3zmmgd9xws7jr2";
+    sha256 = "0x7hhl0svfc4yh9xvq7kkzgmwjcw1ak9i0794wjg4biy2fmclzs4";
   };
 
   outputs = [ "out" "geoip" ];

pkgs/tools/wayland/slurp/default.nix

@@ -13,13 +13,13 @@
 
 stdenv.mkDerivation rec {
   pname = "slurp";
-  version = "1.3.1";
+  version = "1.3.2";
 
   src = fetchFromGitHub {
     owner = "emersion";
     repo = "slurp";
     rev = "v${version}";
-    sha256 = "1fby2v2ylcadgclds05wpkl9xi2r9dfz49dqyqpn20rjv1wnz3jv";
+    sha256 = "sha256-5ZB34rqLyZmfjT/clxNRDmF0qgITFZ5xt/gIEXQzvQE=";
   };
 
   nativeBuildInputs = [

pkgs/top-level/all-packages.nix

@@ -2017,6 +2017,8 @@ in
 
   clasp = callPackage ../tools/misc/clasp { };
 
+  clevercsv = with python3Packages; toPythonApplication clevercsv;
+
   clevis = callPackage ../tools/security/clevis {
     asciidoc = asciidoc-full;
   };
@@ -6438,6 +6440,8 @@ in
 
   macchanger = callPackage ../os-specific/linux/macchanger { };
 
+  macchina = callPackage ../tools/misc/macchina { };
+
   madlang = haskell.lib.justStaticExecutables haskellPackages.madlang;
 
   maeparser = callPackage ../development/libraries/maeparser { };
@@ -7504,6 +7508,8 @@ in
 
   tab = callPackage ../tools/text/tab { };
 
+  tabview = with python3Packages; toPythonApplication tabview;
+
   tautulli = python3Packages.callPackage ../servers/tautulli { };
 
   pleroma-otp = callPackage ../servers/pleroma-otp { };
@@ -28570,6 +28576,8 @@ in
 
   dcm2niix = callPackage ../applications/science/biology/dcm2niix { };
 
+  deepdiff = with python3Packages; toPythonApplication deepdiff;
+
   deepsea = callPackage ../tools/security/deepsea { };
 
   deeptools = callPackage ../applications/science/biology/deeptools { python = python3; };

pkgs/top-level/python-packages.nix

@@ -1343,6 +1343,8 @@ in {
 
   cleo = callPackage ../development/python-modules/cleo { };
 
+  clevercsv = callPackage ../development/python-modules/clevercsv { };
+
   clf = callPackage ../development/python-modules/clf { };
 
   click = callPackage ../development/python-modules/click { };
@@ -7689,6 +7691,8 @@ in {
 
   tabulate = callPackage ../development/python-modules/tabulate { };
 
+  tabview = callPackage ../development/python-modules/tabview { };
+
   tadasets = callPackage ../development/python-modules/tadasets { };
 
   tag-expressions = callPackage ../development/python-modules/tag-expressions { };