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petsc: removed default unfree dependencies

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Alexander Kiselyov 2024-08-23 14:04:49 +03:00 committed by Emery Hemingway
parent 771c5644e8
commit dc622dce81
1 changed files with 36 additions and 43 deletions
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79
pkgs/by-name/pe/petsc/package.nix
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@ -15,6 +15,7 @@
hdf5,
metis,
parmetis,
withParmetis ? false,
pkg-config,
p4est,
zlib, # propagated by p4est but required by petsc
@ -36,7 +37,6 @@ stdenv.mkDerivation rec {
};
inherit mpiSupport;
withp4est = petsc-withp4est;
strictDeps = true;
nativeBuildInputs = [
@ -47,7 +47,7 @@ stdenv.mkDerivation rec {
buildInputs = [
blas
lapack
] ++ lib.optional hdf5-support hdf5 ++ lib.optional withp4est p4est;
] ++ lib.optional hdf5-support hdf5 ++ lib.optional petsc-withp4est p4est ++ lib.optionals withParmetis [ metis parmetis ];
prePatch = lib.optionalString stdenv.isDarwin ''
substituteInPlace config/install.py \
@ -60,49 +60,42 @@ stdenv.mkDerivation rec {
# These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
patches = [ ./filter_mpi_warnings.patch ];
configureFlags = [
"--with-blas=1"
"--with-lapack=1"
"--with-scalar-type=${petsc-scalar-type}"
"--with-precision=${petsc-precision}"
"--with-mpi=${if mpiSupport then "1" else "0"}"
] ++ lib.optionals mpiSupport [
"--CC=mpicc"
"--with-cxx=mpicxx"
"--with-fc=mpif90"
] ++ lib.optionals (mpiSupport && withParmetis) [
"--with-metis=1"
"--with-metis-dir=${metis}"
"--with-parmetis=1"
"--with-parmetis-dir=${parmetis}"
] ++ lib.optionals petsc-optimized [
"--with-debugging=0"
"COPTFLAGS=-O3"
"FOPTFLAGS=-O3"
"CXXOPTFLAGS=-O3"
"CXXFLAGS=-O3"
];
preConfigure = ''
patchShebangs ./lib/petsc/bin
configureFlagsArray=(
$configureFlagsArray
${
if !mpiSupport then
''
"--with-mpi=0"
''
else
''
"--CC=mpicc"
"--with-cxx=mpicxx"
"--with-fc=mpif90"
"--with-mpi=1"
"--with-metis=1"
"--with-metis-dir=${metis}"
"--with-parmetis=1"
"--with-parmetis-dir=${parmetis}"
''
}
${lib.optionalString withp4est ''
"--with-p4est=1"
"--with-zlib-include=${zlib.dev}/include"
"--with-zlib-lib=-L${zlib}/lib -lz"
''}
${lib.optionalString hdf5-support ''
"--with-hdf5=1"
"--with-hdf5-fortran-bindings=1"
"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
"--with-hdf5-include=${hdf5.dev}/include"
''}
"--with-blas=1"
"--with-lapack=1"
"--with-scalar-type=${petsc-scalar-type}"
"--with-precision=${petsc-precision}"
${lib.optionalString petsc-optimized ''
"--with-debugging=0"
COPTFLAGS='-O3'
FOPTFLAGS='-O3'
CXXOPTFLAGS='-O3'
CXXFLAGS='-O3'
''}
'' + lib.optionalString petsc-withp4est ''
configureFlagsArray+=(
"--with-p4est=1"
"--with-zlib-include=${zlib.dev}/include"
"--with-zlib-lib=-L${zlib}/lib -lz"
)
'' + lib.optionalString hdf5-support ''
configureFlagsArray+=(
"--with-hdf5=1"
"--with-hdf5-fortran-bindings=1"
"--with-hdf5-include=${hdf5.dev}/include"
"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
)
'';