R: fix some modules with configure-shebang-error

- xml2: fix configure script
- rversion, devtools: mark as unbroken
  dependency R-curl was fixed in 513e31185b
This commit is contained in:
Michel Kuhlmann 2015-10-12 10:02:48 +02:00
parent 3d0c064d1b
commit ec8f31d26c

View File

@ -999,7 +999,6 @@ let
"DESeq" # broken build
"DESP" # broken build
"destiny" # depends on broken package VIM-4.3.0
"devtools" # broken build
"DEXSeq" # depends on broken package Rsamtools-1.21.8
"dexus" # broken build
"DFP" # broken build
@ -1573,7 +1572,6 @@ let
"npIntFactRep" # depends on broken package nlopt-2.4.2
"NSM3" # broken build
"nucleR" # depends on broken package Rsamtools-1.21.8
"oai" # depends on broken package r-xml2-0.1.2
"OCplus" # broken build
"OGSA" # broken build
"oligoClasses" # depends on broken package affyio-1.37.0
@ -1934,7 +1932,6 @@ let
"RUVnormalize" # Build Is Broken
"RUVSeq" # depends on broken package Rsamtools-1.21.8
"RVAideMemoire" # depends on broken package nlopt-2.4.2
"rversions" # broken build
"rvest" # broken build
"RVFam" # depends on broken package nlopt-2.4.2
"RVideoPoker" # depends on broken package rpanel-1.1-3
@ -2153,7 +2150,6 @@ let
"XDE" # broken build
"x_ent" # broken build
"xergm" # depends on broken package nlopt-2.4.2
"xml2" # broken build
"xps" # build is broken
"XVector" # broken build
"yaqcaffy" # depends on broken package affyio-1.37.0
@ -2177,7 +2173,10 @@ let
});
xml2 = old.xml2.overrideDerivation (attrs: {
preConfigure = "export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2";
preConfigure = ''
export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2
patchShebangs configure
'';
});
curl = old.curl.overrideDerivation (attrs: {