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conglomerate: init at 2017-09-10

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This commit is contained in:
Ben Darwin 2018-04-27 18:52:46 -04:00
parent 7b75efa231
commit fa850e8fda
2 changed files with 38 additions and 0 deletions
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34
pkgs/applications/science/biology/conglomerate/default.nix Normal file
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@ -0,0 +1,34 @@
{ stdenv, fetchFromGitHub, cmake, coreutils, perl, bicpl, libminc, zlib, minc_tools,
makeWrapper, GetoptTabular, MNI-Perllib }:
stdenv.mkDerivation rec {
pname = "conglomerate";
name = "${pname}-2017-09-10";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "7343238bc6215942c7ecc885a224f24433a291b0";
sha256 = "1mlqgmy3jc13bv7d01rjwldxq0p4ayqic85xcl222hhifi3w2prr";
};
nativeBuildInputs = [ cmake makeWrapper ];
buildInputs = [ libminc zlib bicpl ];
propagatedBuildInputs = [ coreutils minc_tools perl GetoptTabular MNI-Perllib ];
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" "-DBICPL_DIR=${bicpl}/lib/" ];
postFixup = ''
for p in $out/bin/*; do
wrapProgram $p --prefix PERL5LIB : $PERL5LIB --set PATH "${stdenv.lib.makeBinPath [ coreutils minc_tools ]}";
done
'';
meta = with stdenv.lib; {
homepage = https://github.com/BIC-MNI/conglomerate;
description = "More command-line utilities for working with MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}

4
pkgs/top-level/all-packages.nix
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@ -19740,6 +19740,10 @@ with pkgs;
bcftools = callPackage ../applications/science/biology/bcftools { };
conglomerate = callPackage ../applications/science/biology/conglomerate {
inherit (perlPackages) GetoptTabular MNI-Perllib;
};
dcm2niix = callPackage ../applications/science/biology/dcm2niix { };
diamond = callPackage ../applications/science/biology/diamond { };