Commit Graph

184 Commits

Author SHA1 Message Date
Dmitry Kalinkin
c36f841ec7
root5: fix build 2019-03-20 00:26:13 -04:00
Peter Hoeg
136126ceae
Merge pull request #56498 from ariutta/patch-1
cytoscape: bump 3.6.1 -> 3.7.1
2019-03-11 11:20:50 +08:00
Jan Tojnar
d3ff902e94
webkit: move to aliases 2019-03-06 00:20:55 +01:00
Dmitry Kalinkin
aa4f5cc4a3
simgrid: Fix the upstream project URL
Closes: #56849
2019-03-04 16:42:46 -05:00
Anders Riutta
c792fd107b
cytoscape: bump 3.6.1 -> 3.7.1
Needed to update URL, because `wget "http://chianti.ucsd.edu/cytoscape-3.7.1/cytoscape-3.7.1.tar.gz"` returns `404`.
2019-02-27 16:40:50 -08:00
Sebastien Bourdeauducq
3b03b901fb rink: init at 0.4.4 2019-02-03 13:29:18 +08:00
Vladimír Čunát
bde8efe792
Merge branch 'master' into staging-next
A couple thousand rebuilds have accumulated on master.
2019-01-12 12:19:34 +01:00
Dmitry Kalinkin
73625f2522 root5: mark as broken on Linux 2019-01-11 20:45:37 -05:00
Dmitry Kalinkin
0c9335fb1c root, root5: fix build on darwin 2019-01-11 20:45:37 -05:00
Vladimír Čunát
287144e342
Merge branch 'master' into staging-next 2019-01-10 13:07:21 +01:00
Piotr Bogdan
71f216b7e6 golly-beta: link with lib{dl,GL} explicitly 2019-01-04 21:44:19 +00:00
Frederik Rietdijk
0a2caa41fe Python: drop python.majorVersion
Drop `python.majorVersion`. For Python language version, use `python.pythonVersion`.
For implementation version, use `python.sourceVersion`.

Some expressions were broken. Those that were identified were fixed.

fixup major
2019-01-04 10:45:22 +01:00
c0bw3b
0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Vladimír Čunát
a5de78b7d7
Merge branch 'master' into staging-next 2018-11-26 10:28:00 +01:00
c0bw3b
0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Frederik Rietdijk
c31cb577ae Merge master into staging-next 2018-11-22 09:57:08 +01:00
worldofpeace
2e70b40f58
Merge pull request #49376 from dpaetzel/package-netlogo
NetLogo: init 6.0.4
2018-11-21 21:37:01 -05:00
David Pätzel
fa623ad828 netlogo: init 6.0.4 2018-11-21 09:38:22 +01:00
Frederik Rietdijk
0d0d7dcd06 Merge staging-next into staging 2018-11-18 10:41:34 +01:00
Kevin Liu
c93b16829c
boinc: 7.8.0 -> 7.14.2 2018-11-16 15:52:22 -05:00
Patrick Hilhorst
9ec40cc3bf
treewide: Fix overrides having wrong versions 2018-11-06 00:06:21 +01:00
Tristan Helmich (omniIT)
4f8cac02c6 simgrid: 3.20 -> 3.21 2018-11-02 14:23:39 +01:00
Adam Washington
6be90bf8d7
sasmodels: unstable -> 4.2.0 2018-10-17 14:36:46 +01:00
Dmitry Kalinkin
3187db6e8d root5: init at 5.34.36 2018-09-24 14:34:49 -04:00
Markus Kowalewski
70e254d6bd
root: add license 2018-09-08 14:51:28 +02:00
Renato Garcia
318c9296fa snakemake: add maintainers (#46117) 2018-09-05 21:46:17 +02:00
Sebastian Meric de Bellefon
93ce77af40 python.pkgs.snakemake: init at 5.2.2 2018-09-01 09:18:19 -04:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
Michael Mercier
b8566965df Update simgrid 3.19.1 -> 3.20 + parallel tests + enable darwin (#42721)
* simgrid: 3.19.1 -> 3.20

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/simgrid/versions.

These checks were done:

- built on NixOS
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicc passed the binary check.
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicxx passed the binary check.
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpirun passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/tesh had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid-colorizer passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_update_xml had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_convert_TI_traces passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpimain had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/graphicator passed the binary check.
- 6 of 9 passed binary check by having a zero exit code.
- 4 of 9 passed binary check by having the new version present in output.
- found 3.20 with grep in /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20
- directory tree listing: https://gist.github.com/edefc2f1a2e81412484edc2e45986e03
- du listing: https://gist.github.com/a44f7d57537e93152a8e6c569f8ed1ae

* simgrid: 3.19.1 -> 3.20 + add darwin

- Fix dependencies to enable build on darwin
- Add ctest flag to enable parallel testing

* Use simpler parallel testing logic

because it is already done in nixpkgs/pkgs/stdenv/generic/setup.sh
2018-08-15 19:54:41 -05:00
John Ericson
db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth
87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
R. RyanTM
d25ec8df03 golly: 3.1 -> 3.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/golly/versions.
2018-07-13 03:02:59 -07:00
Matthew Bauer
2171fc4d55
Merge pull request #42590 from TimPut/openmvsbuildfix
openmvs: build with CGAL 4.12
2018-06-28 22:33:40 -04:00
tim put
385114da68 openmvs: fix CGAL 4.12 dependency
patch executables with openMVS library path
2018-06-26 21:55:15 -06:00
tim put
a47a16a887 openmvg: 1.1 -> 1.3 2018-06-25 16:12:26 -06:00
Ryan Mulligan
e094cda74f simgrid: 3.17 -> 3.19.1 2018-05-28 06:01:17 -07:00
Yegor Timoshenko
4e049b2fd4 simgrid: cleanup 2018-05-25 15:48:28 -05:00
Matthew Bauer
02297beade treewide: add version to packages
Lots of packages are missing versions in their name. This adds them
where appropriate. These were found with this command:

 $ nix-env -qa -f. | grep -v '\-[0-9A-Za-z.-_+]*$' | grep -v '^hook$'

See issue #41007.
2018-05-25 15:48:05 -05:00
Maximilian Bosch
be53a0f2ef sasview: fix build (#40433)
The package breaks currently breaks with the following message:

```
fixed-output derivation produced path '/nix/store/5dh1mdj027ad8sprk12fqa5h5bpdxs5n-sasview' with sha256 hash '12k1w4yq1mzjxcp2cqb562c7cbwzhi54rsbmgi0fax0i1660q167' instead of the expected hash '05la54wwzzlkhmj8vkr0bvzagyib6z6mgwqbddzjs5y1wd48vpcx'
```

To fix the build the following changes were applied:

* Switched to latest master for now as the older releases have a broken
  `py.test` configuration and altering hashes.

* Added `checkPhase` which invokes `py.test` directly and drops
  duplicated files from `dist/tmpbuild`.

* Rebased the patches `pyparsing-fix.patch` and `local_config.patch` for
  the latest master revision.

Additionally refer to the discussion in #40381 for further reference.
2018-05-13 17:25:18 +02:00
Will Dietz
4b7b083bcb treewide: stdenv.lib.platforms.gnu -> ... gnu ++ linux
Include all linux platforms.
2018-04-30 18:12:10 -05:00
Lancelot SIX
8d58b1a0a0
Merge pull request #39360 from lsix/update_motu
motuclient: 1.4.00 -> 1.5.00
2018-04-25 11:46:19 +02:00
Lancelot SIX
9b5793790e
motuclient: 1.4.00 -> 1.5.00 2018-04-23 10:50:45 +02:00
Matthew Justin Bauer
853529b2ea
Merge pull request #38740 from r-ryantm/auto-update/cytoscape
cytoscape: 3.6.0 -> 3.6.1
2018-04-18 22:20:04 -05:00
xeji
d63702a473 openmvg: mark as broken 2018-04-12 23:04:02 +02:00
R. RyanTM
65e18bd38f cytoscape: 3.6.0 -> 3.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cytoscape/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
- found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
- directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
2018-04-11 01:12:34 -07:00
Matthew Justin Bauer
6a74718e00
Merge pull request #36852 from rprospero/sasview-for-pr
sasview: init at 4.1.2
2018-04-09 14:07:40 -05:00
Jörg Thalheim
1e9e19b2aa openmvs-unstable: 2017-05-01 -> 2018-05-26
fix build
2018-04-08 10:36:25 +01:00
Adam Washington
392def733b
Remove lint from Sasview package 2018-03-22 17:44:27 +00:00
Adam Washington
01c1385dec
Make xhtml2pdf its own package in python-packages
xhtml2pdf now uses the main package html5lib with just an override to
pull the correct version number.
2018-03-21 13:46:17 +00:00