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5319 Commits

Author SHA1 Message Date
github-actions[bot]
6ad93ecdbb
Merge master into staging-next 2021-11-21 06:01:18 +00:00
Ryan Burns
2175b157ac treewide: refactor isi686 && isx86_64 -> isx86 2021-11-20 17:50:41 -08:00
Mauricio Collares
1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures (#4) 2021-11-20 20:13:07 -03:00
Sandro
00a52ef677
R: manually fix things after patches got applied 
This prevents conflicts in case a patch changes the same line
 2021-11-20 21:10:28 +01:00
Robert Scott
ec24bab90e hmmer: restrict platforms to x86_64 
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
 2021-11-20 19:17:57 +00:00
AndersonTorres
dc2cad8150 gp2c: cosmetical changes 2021-11-19 20:35:16 -03:00
AndersonTorres
3845245d71 pari: 2.13.1 -> 2.13.3 2021-11-19 20:35:16 -03:00
Jonathan Ringer
fadaef5aed
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/applications/networking/browsers/chromium/common.nix
 2021-11-19 14:31:57 -08:00
Sandro
ab9aa0dfeb
Merge pull request #146668 from rittelle/remove-rittelle 2021-11-19 21:56:17 +01:00
rittelle
4d8d035c6c
Removed rittelle from the maintainer list 2021-11-19 21:29:09 +01:00
Yurii Matsiuk
29ed2bbe02
fricas: fix build 2021-11-19 21:06:44 +01:00
github-actions[bot]
9d44a614de
Merge master into staging-next 2021-11-19 12:01:09 +00:00
Doron Behar
4d28812ef4 qalculate-gtk: 3.20.1 -> 3.21.0 
Add @doronbehar as maintainer to qalculate-gtk and libqalculate.
 2021-11-19 09:15:32 +02:00
github-actions[bot]
cf671bd5e9
Merge master into staging-next 2021-11-17 12:01:23 +00:00
Sébastien Maret
7a5f0ec2d1 R: fix build on Darwin 
Closes #146131.
 2021-11-17 11:08:50 +01:00
Sébastien Maret
7eea330318
gildas: 20200901_a -> 20211101_a (#146224) 2021-11-17 01:03:57 -05:00
github-actions[bot]
f8cf67790e
Merge master into staging-next 2021-11-17 06:01:28 +00:00
figsoda
6ad04bcb7d
Merge pull request #146243 from figsoda/treewide-rust-feature 
treewide: use buildFeatures and checkFeatures for rust packages
 2021-11-16 21:00:48 -05:00
github-actions[bot]
ca7a3ad2e8
Merge master into staging-next 2021-11-16 18:01:14 +00:00
Sandro
0e4ef9ab2b
Merge pull request #139294 from shnarazk/kissat-init 2021-11-16 18:47:19 +01:00
figsoda
2448ef4630 elan: use buildFeatures 2021-11-16 08:11:49 -05:00
figsoda
cc0e233801 finalfusion-utils: use buildFeature 2021-11-16 08:11:48 -05:00
github-actions[bot]
cfaff97318
Merge staging-next into staging 2021-11-15 18:01:43 +00:00
Gabriel Ebner
f4e3542f5d
Merge pull request #146162 from Kha/elan-wrap-lld 
elan: wrap embedded linker
 2021-11-15 18:07:14 +01:00
Sebastian Ullrich
f8bbc587eb elan: wrap embedded linker 2021-11-15 17:10:04 +01:00
github-actions[bot]
faf5da6aed
Merge staging-next into staging 2021-11-15 12:01:44 +00:00
Mario Rodas
f20b2bb9f5
Merge pull request #143551 from r-ryantm/auto-update/scotch 
scotch: 6.0.4 -> 6.1.1
 2021-11-14 21:16:10 -05:00
Mario Rodas
c8fb7191ad
Merge pull request #143541 from r-ryantm/auto-update/bcftools 
bcftools: 1.13 -> 1.14
 2021-11-14 21:14:30 -05:00
Robert Scott
e4362cea6f monosat, python3Packages.monosat: fix for non-x86 2021-11-14 22:25:09 +00:00
Alyssa Ross
4e1852096f
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/tools/parsing/flex/2.6.1.nix
 2021-11-14 14:17:46 +00:00
Robert Scott
9149d366b9 boolector: add patch fixing build on aarch64-linux 2021-11-13 19:45:51 -06:00
Robert Scott
3b7766eac2 lingeling: pre1_03b4860d -> pre1_708beb26 2021-11-13 19:45:51 -06:00
Alyssa Ross
26b89bcd16
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 2021-11-13 15:30:01 +00:00
Thomas Watson
1564d88c41 redprl: unstable-2017-03-28 -> unstable-2019-11-04 2021-11-12 19:24:17 -06:00
github-actions[bot]
65356b24bf
Merge staging-next into staging 2021-11-12 18:01:48 +00:00
markuskowa
db93862a2c
Merge pull request #145614 from sheepforce/openmolcas 
openmolcas: 21.06 -> 21.10
 2021-11-12 13:26:38 +01:00
Phillip Seeber
c810f7befc openmolcas: 20.06 -> 20.10 2021-11-12 11:52:30 +01:00
Phillip Seeber
ca7dd700e5 octopus: 10.5 -> 11.2 2021-11-12 11:47:59 +01:00
github-actions[bot]
fd8fae936e
Merge staging-next into staging 2021-11-12 06:02:01 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool 
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
 2021-11-11 23:41:46 -05:00
github-actions[bot]
40a54af057
Merge staging-next into staging 2021-11-12 00:01:59 +00:00
Thiago Kenji Okada
5259293c10
Merge pull request #144899 from Luz/librepcb-0.1.6 
librepcb: 0.1.5 -> 0.1.6
 2021-11-11 15:06:19 -03:00
github-actions[bot]
a4e03b8977
Merge staging-next into staging 2021-11-11 18:01:50 +00:00
Sandro
3260545bc7
Merge pull request #145056 from angustrau/logisim-evolution-3.7.1 2021-11-11 14:01:44 +01:00
Kerstin Humm
bb799694db
epoxy: rename to libepoxy 
https://github.com/NixOS/nixpkgs/issues/145040
 2021-11-11 05:55:32 +01:00
xaverdh
03a257e5a3
treewide: quote urls according to rfc 0045 (#145260) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-11-10 11:37:56 +01:00
markuskowa
9995dbad24
Merge pull request #145251 from markuskowa/upd-gromacs 
gromacs: 2021.3 -> 2021.4
 2021-11-09 22:45:05 +01:00
Jörg Thalheim
584c5fc24d
Merge pull request #145161 from smancill/shogun-fix-build 
shogun: refactor derivation and fix build
 2021-11-09 20:49:19 +00:00
Sandro
9a9ef88b8c
Merge pull request #145178 from SuperSandro2000/applications 
Applications
 2021-11-09 21:33:41 +01:00
Sandro Jäckel
b1c5442ceb
fixup! prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:26:04 +01:00
Sandro Jäckel
15d85dac80
redprl: switch to fetchFromGitHub, use postPatch 2021-11-09 20:10:31 +01:00
Sandro Jäckel
11c55d061e
prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:10:30 +01:00
Markus Kowalewski
430ad642a2
gromacs: 2021.3 -> 2021.4 2021-11-09 20:10:04 +01:00
Vincent Laporte
b42501e1e7 proverif: 2.02pl1 → 2.03 
Do not build `proverif_interact` (that was not installed).
 2021-11-09 17:50:01 +01:00
Angus Trau
14580c7f4d logisim-evolution: 3.5.0 -> 3.7.1 2021-11-09 17:33:19 +11:00
Sebastián Mancilla
203db44ed4 shogun: fix compile errors with Eigen 3.4 
Fixes #142811.
 2021-11-09 00:27:13 -03:00
Sebastián Mancilla
82568e6718 shogun: refactor build 
Main changes are:

- Build with default stdenv instead of forcing GCC 8, by applying upstream
  patches that fix building with newer compilers.

  Together with #134390 and #134393 (and the blas library fixes on #135493
  and #136535), this enables building the derivation on darwin.

- Use multiple outputs.

- Move build-only inputs to nativeBuildInputs.

- Generate the meta examples but do not compile them (they are compiled as
  part of the tests), to not make the build take more time than already is.

  Install the example source files into $doc (but do not install the
  example binaries, only the sources).

- Enable testing by setting the CMake variable CMAKE_SKIP_BUILD_RPATH to
  false (it should not be needed if #108496 is merged). This allows the
  tests to locate the shogun library and run without problems.

  Disable integration and meta tests to speed up the build.

With a few other minor changes:

- Use upstream URL for the json-c patch.

- Be explicit about which optional, commercial dependencies are not used,
  to stop CMake searching for them.

- Do not set NIX_CFLAGS_COMPILE with '-faligned-new' because it causes a
  warning when compiling C files. Set CXXFLAGS instead.

- Remove unnecessary ccache variables from the environment.

- Fix wrong Google Mock download location, which was forcing CMake to need
  network access to download the tarball to the right location (which fails
  within the sandbox).
 2021-11-08 23:57:29 -03:00
Sebastián Mancilla
1e25b1831d shogun: add smancill to maintainers 2021-11-08 23:02:09 -03:00
Sebastián Mancilla
2dd5d704d5 shogun: format derivation 2021-11-08 23:01:59 -03:00
Bruno Bzeznik
4e5a245894 obitools3: removed useless python restriction 2021-11-08 07:51:48 +01:00
Sandro
f2c9cf39e5
Merge pull request #145006 from Artturin/spdlogupd 2021-11-07 23:04:28 +01:00
Artturin
b4fab0a98b treewide: remove fmt from buildInputs where spdlog is used 
spdlog_1 has fmt_8 in propagatedBuildInputs and having fmt which points
to fmt_7 in buildInputs makes the builds use wrong fmt
 2021-11-07 22:05:08 +02:00
Felix Buehler
b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Justin Bedő
7016c7df1c
Merge pull request #144820 from NixOS/r-updates 
R,rPackages: R 4.1.1 -> 4.1.2, rPackages BioC 3.13 -> 3.14
 2021-11-07 08:12:10 +11:00
Matt Christ
065281add0 cemu: mark as broken on darwin 
https://github.com/NixOS/nixpkgs/pull/144889#issuecomment-962469610
 2021-11-06 13:54:44 -07:00
Matt Christ
2771743966 cemu: add link-time-compile-gen, build with gcc9stdenv 2021-11-06 13:54:44 -07:00
Luz
7a51cf9c1d librepcb: 0.1.5 -> 0.1.6 2021-11-06 17:35:58 +01:00
Fabian Affolter
18b531b514 cwltool: 3.1.20210628163208 -> 3.1.20211104071347 2021-11-06 13:01:16 +01:00
Ellie Hermaszewska
03f9ced512
picoscope: 6.14.44 -> 7.0.83 2021-11-06 17:32:49 +08:00
Michael Raskin
d8b7d0e066
Merge pull request #123511 from yorickvP/yorick-picoscope 
picoscope: init at 6.14.44-4r5870
 2021-11-06 08:48:13 +00:00
Alyssa Ross
02dfbde639
treewide: use mirror URLs where available 
Candidates identified with

	git grep -F "$(grep -v '#' pkgs/build-support/fetchurl/mirrors.nix |
		grep -v nixos.org | grep :// | cut -d '"' -f 2)"

and then manually reviewed and tested.
 2021-11-06 01:56:39 +00:00
Florian Klink
3097a43496 xmedcon: 0.21.0 -> 0.21.2 
in release 0.21.2 @ 20-Jul-2021 (Gtk+3)

    Small addition in our speedometer CSS theme: window titlebar is now in dark mode too
    Learned how to leave out annoying autotools reconfigure rules from Makefiles via AM_MAINTAINER_MODE macro
        Why? working with most recent autotools version <> older autotools version on most systems <> users are not necessarily developers ...
    Improvements for Wayland (CentOS Stream / OpenSUSE Tumbleweed)
        Menu "Online info" core dumps due to "toplevel" window problem
        Check "Gdk-CRITICAL gdk_monitor_get_workarea: assertion 'GDK_IS_MONITOR ()' failed"
        gtk_window_set_transient_for(window, parent)
        Not working GBC-widget (gamma, brightness, contrast)

in release 0.21.1 @ 01-May-2021 (Gtk+3)

    Require libpng >= 1.6.0 for Ubuntu's sake
    Added in GUI resizing to fifth and quint
    Secured two sprintf() statements
    Updated Inno Setup file for Gtk+3 dependencies
    Fresh update of application icon
    GIF89a: write "XMedCon" in application block
 2021-11-05 15:30:51 +01:00
Florian Klink
0886f51b37 xmedcon: fix meta.platforms 
platforms.darwin and platforms.linux are both lists. They need to be
concatenated, otherwise they're not recognized as supported platforms.
 2021-11-05 15:30:51 +01:00
Mauricio Collares
076563ebac sage: import sympy 1.9 update patch 2021-11-04 18:53:06 +01:00
Justin Bedő
a5ac0a33a7
Merge pull request #144529 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.3 -> 2.26.4
 2021-11-04 07:19:02 +11:00
R. Ryantm
509a8c298f picard-tools: 2.26.3 -> 2.26.4 2021-11-03 19:57:00 +00:00
Michael Raskin
df3adb0398
Merge pull request #144502 from r-ryantm/auto-update/opensmt 
opensmt: 2.1.1 -> 2.2.0
 2021-11-03 18:23:06 +00:00
R. Ryantm
8fed17e682 opensmt: 2.1.1 -> 2.2.0 2021-11-03 18:03:12 +00:00
Bobby Rong
1c78751423
Merge pull request #144416 from bobby285271/mainprogram 
treewide: set meta.mainProgram for packages teams.pantheon.members maintain
 2021-11-03 20:10:33 +08:00
Bobby Rong
2483e778d4
treewide: set meta.mainProgram for packages teams.pantheon.members maintain 2021-11-03 19:07:21 +08:00
Artturi
0099cd6289
Merge pull request #137636 from bzizou/obitools 2021-11-03 12:30:53 +02:00
Bruno Bzeznik
0d9ec2d3f0 obitools3: fix build on aarch64 + formatting 2021-11-03 11:59:05 +02:00
R. Ryantm
14ee52edff elan: 1.3.0 -> 1.3.1 
(cherry picked from commit 4cb7820ac9)
 2021-11-03 10:51:13 +01:00
Artturi
74f25e606c
Merge pull request #143613 from r-ryantm/auto-update/cytoscape 
cytoscape: 3.8.2 -> 3.9.0
 2021-11-02 14:39:53 +02:00
Artturi
495f6106d5
Merge pull request #144226 from r-ryantm/auto-update/antiprism 
antiprism: 0.26 -> 0.29
 2021-11-02 14:19:37 +02:00
Artturi
ff29a7175b
Merge pull request #143618 from r-ryantm/auto-update/dcm2niix 
dcm2niix: 1.0.20210317 -> 1.0.20211006
 2021-11-02 13:58:10 +02:00
R. Ryantm
253e9ecfab antiprism: 0.26 -> 0.29 2021-11-02 11:08:06 +00:00
Justin Bedo
257a939cfc
R: 4.1.1 -> 4.1.2 2021-11-02 17:42:34 +11:00
github-actions[bot]
d27dd6653e
Merge master into staging-next 2021-11-02 00:01:32 +00:00
Vincent Laporte
f727a6aebe why3: remove spurious camlp5 dependency 2021-11-01 20:37:57 +01:00
Mauricio Collares
89d7336c20 lean: 3.34.0 -> 3.35.0 2021-11-01 19:17:17 +01:00
Mauricio Collares
c707a468a4 lean: 3.33.0 -> 3.34.0 2021-11-01 19:17:17 +01:00
github-actions[bot]
bd0051cd54
Merge master into staging-next 2021-11-01 18:01:02 +00:00
Gabriel Ebner
f13aa788e1 elan: 1.2.0 -> 1.3.0 2021-11-01 13:37:56 +01:00
github-actions[bot]
7eaf56d92e
Merge master into staging-next 2021-11-01 00:01:32 +00:00
Sandro
dcc0ba6967
Merge pull request #144043 from Smaug123/lean-darwin 2021-10-31 23:39:39 +01:00
Smaug123
925ab444c9 elan: 1.1.0 -> 1.2.0 
The move to 1.1.0 broke Darwin: the patch introduced during that move
is also required on Darwin, but is hidden behind a Linux-specific
optional. The patch has since made it upstream, so the easiest fix
is simply to upgrade Elan.
 2021-10-31 21:41:38 +00:00
Sandro
254f7f273a
Merge pull request #143798 from evils/kicad-5.1.11 2021-10-31 22:11:41 +01:00
github-actions[bot]
f66386e3b1
Merge master into staging-next 2021-10-31 12:01:13 +00:00
Robert Scott
b56f93abf9
Merge pull request #143764 from r-ryantm/auto-update/hal-hardware-analyzer 
hal-hardware-analyzer: 3.2.6 -> 3.3.0
 2021-10-31 11:53:35 +00:00