Commit Graph

1959 Commits

Author SHA1 Message Date
Matthew Bauer
fddd90e9ea
Merge pull request #43538 from timokau/fetchpatch-fix
fetchpatch: quote excludes
2018-07-19 00:35:09 -04:00
Matthew Bauer
76999cc40e treewide: remove aliases in nixpkgs
This makes the command ‘nix-env -qa -f. --arg config '{skipAliases =
true;}'’ work in Nixpkgs.

Misc...

- qtikz: use libsForQt5.callPackage

  This ensures we get the right poppler.

- rewrites:

  docbook5_xsl -> docbook_xsl_ns
  docbook_xml_xslt -> docbook_xsl

diffpdf: fixup
2018-07-18 23:25:20 -04:00
Michael Raskin
877899fdb9
Merge pull request #43679 from timokau/ntl-11.2.1
ntl: 9.11.0 -> 11.2.1
2018-07-18 15:08:43 +00:00
Jan Tojnar
a4443ef859
nasc: 0.4.6 → 0.4.7 2018-07-18 15:38:52 +02:00
Timo Kaufmann
cad446513e ntl: 9.11.0 -> 11.2.1
ntl hasn't been updated in a while. So I'm doing that and adding myself
as the maintainer. I'm also adding some options and pinning the sage
dependency, since it is unfortunately not compatible with the latest ntl
yet.

I've also enabled the tests, since they don't take terribly long and are
worth the time in my opinion.
2018-07-18 14:58:38 +02:00
Timo Kaufmann
3058513941 fetchpatch: add option to revert a patch 2018-07-16 22:46:54 +02:00
Jan Malakhovski
e80ca2182c clp: cleanup expression 2018-07-16 16:33:14 +00:00
Gabriel Ebner
862e4e4fdb cvc4: fix homepage url 2018-07-16 15:58:22 +01:00
fragamus
794a60a2fb bliss: fix header location (#43170) 2018-07-16 04:12:07 +00:00
Shea Levy
ed23255c5a
Merge branch 'init-gurobi' of git://github.com/jfrankenau/nixpkgs 2018-07-15 18:25:07 -04:00
Timo Kaufmann
c77d1e5b31 eclib: 20171219 -> 20180710
Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
2018-07-15 14:59:28 +02:00
Johannes Frankenau
d6874a7e1e gurobi: init at 8.0.1 2018-07-14 23:52:48 +02:00
Mario Rodas
1c88d0c6bd z3: fix darwin build (#43526) 2018-07-14 21:49:47 +02:00
markuskowa
7f1bcb1ebf octopus: 7.2 -> 8.1 (libxc 3.0.1 -> 4.2.3) (#43484) 2018-07-14 00:37:30 +02:00
Timo Kaufmann
85f7fa93bc pythonPackages.cypari2: 1.1.4 -> 1.2.1 (#43496) 2018-07-14 00:17:55 +02:00
Frederik Rietdijk
d0446a5c76
Merge pull request #43436 from timokau/sage-new-flask
sage: replace flask-babel version pin by patch
2018-07-13 18:52:26 +02:00
Frederik Rietdijk
59163c9c1c
Merge pull request #43471 from r-ryantm/auto-update/igv
igv: 2.4.11 -> 2.4.13
2018-07-13 18:47:57 +02:00
Michael Raskin
9932071581
Merge pull request #43472 from r-ryantm/auto-update/golly
golly: 3.1 -> 3.2
2018-07-13 15:51:31 +00:00
Will Dietz
efdf4711d8
Merge pull request #43445 from dtzWill/fix/yices-symlink
yices: fix symlink created to match version
2018-07-13 10:11:49 -05:00
R. RyanTM
d25ec8df03 golly: 3.1 -> 3.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/golly/versions.
2018-07-13 03:02:59 -07:00
R. RyanTM
ab535c2757 igv: 2.4.11 -> 2.4.13
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.
2018-07-13 02:49:22 -07:00
Will Dietz
f731c99e7d abc-verifier: 20160818 -> 2018-07-08
Now hosted on github.
2018-07-12 21:44:56 -05:00
Will Dietz
946a65ca5c yices: use lib.splitString, not everyone has builtins.splitVersion 2018-07-12 19:11:06 -05:00
Will Dietz
237c8f4148 yices: simplify ln command 2018-07-12 18:52:10 -05:00
Will Dietz
6ff8685057 yices: fix symlink to match version of package
To help avoid this happening again, derive the string to use
from the version directly instead of embedding it in installPhase.
2018-07-12 18:46:28 -05:00
Will Dietz
d3a595f190 libpoly: 0.1.5 -> 0.1.7 (noop), cleanup a bit to modern style 2018-07-12 17:06:57 -05:00
Timo Kaufmann
35896e3506 sage: replace flask-babel version pin by patch 2018-07-12 22:55:16 +02:00
Austin Seipp
54e9f7dcbe z3: move to multiple output packages
The Z3 source code is effectively compiled into two completely separate
objects: the z3 binary file, and the libz3.so library -- but the binary is not
linked against the shared library, it simply incorporates all of the object
files. The Z3 code base results in an ~25MB object on x86_64-linux. As a
result, splitting bin/ and lib/ results in a 50% reduction in closure size.

(The include/ directory is also surprisingly large at .5MB...)

This also splits the python API into a completely separate .python attribute,
as well.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-07-12 15:48:48 -05:00
Timo Kaufmann
d37c23c699 jmol: 14.29.12 -> 14.29.17 (#43429) 2018-07-12 22:31:52 +02:00
Frederik Rietdijk
04cae0e5fb
Merge pull request #43333 from r-ryantm/auto-update/libpoly
libpoly: 0.1.4 -> 0.1.5
2018-07-11 19:01:02 +02:00
R. RyanTM
40e648b7ab yices: 2.5.4 -> 2.6.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/yices/versions.
2018-07-11 08:45:45 -05:00
R. RyanTM
a89b538f0b libpoly: 0.1.4 -> 0.1.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/libpoly/versions.
2018-07-11 02:29:13 -07:00
R. RyanTM
ade3e571a1 qalculate-gtk: 2.6.0 -> 2.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions.
2018-07-11 00:45:08 -07:00
R. RyanTM
99cb9de551 fricas: 1.3.3 -> 1.3.4 (#43023)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/fricas/versions.

These checks were done:

- built on NixOS
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/fricas passed the binary check.
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/efricas passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.3.4 with grep in /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4
- directory tree listing: https://gist.github.com/75d751d9733f6b0a7b582ab838a71963
- du listing: https://gist.github.com/4c6fe5f342430a2b36568da3229d3dc4
2018-07-09 16:02:58 +02:00
R. RyanTM
6ec4be7ec5 igv: 2.4.10 -> 2.4.11 (#43003)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/bin/igv had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.4.11 with grep in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
- directory tree listing: https://gist.github.com/ca4cf484aab1c1590806c47c4fdde1d7
- du listing: https://gist.github.com/f7ff80a2429cf0a942195db4944659b1
2018-07-09 16:02:34 +02:00
Silvan Mosberger
8e2c3b93ba
Merge pull request #43096 from jbedo/mosdepth
mosdepth: init 0.2.3
2018-07-09 04:55:24 +02:00
Dan Peebles
1dd7bc7dfc monosat: update build to use handy new environment variable 2018-07-08 22:04:05 -04:00
Dan Peebles
0372c87481 monosat: cbaf79cf -> 2deeadef
Upstream fixed a few things I needed to work around
2018-07-08 21:57:00 -04:00
Justin Bedo
59141de608
mosdepth: init 0.2.3 2018-07-09 08:51:49 +10:00
Dan Peebles
631dd7a4e9 monosat: init at 1nx3wh34
Also includes the python and java bindings (although java is only
currently enabled on Linux)
2018-07-08 12:43:29 -04:00
R. RyanTM
cb85999b6b picard-tools: 2.18.7 -> 2.18.9 (#42967)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/ah3v1x61gmj9lan8a3qvy3824lqvjdgi-picard-tools-2.18.9/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.9 with grep in /nix/store/ah3v1x61gmj9lan8a3qvy3824lqvjdgi-picard-tools-2.18.9
- directory tree listing: https://gist.github.com/0972acdc51fe8a1cde470e4ab5e87993
- du listing: https://gist.github.com/6a66b6723ce4887cd108678369b87360
2018-07-06 20:24:57 +02:00
John Wiegley
56afc551f2
verilator: Allow building on Darwin as well as Linux 2018-07-05 15:17:17 -07:00
Matthew Bauer
bb0febf575
Merge pull request #43079 from matthewbauer/rework-extra-pkgs
Rework stage.nix's extraPkgs
2018-07-05 18:05:57 -04:00
Matthew Bauer
c491a99362 treewide: remove callPackage_i686
This has been replaced with pkgsi686Linux.callPackage
2018-07-05 14:04:52 -04:00
Will Dietz
67986382e4
Merge pull request #43071 from dtzWill/fix/vampire-portability
vampire: portability fixes
2018-07-05 11:13:42 -05:00
Gabriel Ebner
bec83a2b9e cvc4: 1.5 -> 1.6 2018-07-05 17:57:06 +02:00
Will Dietz
7353d8396d vampire: enable parallel building 2018-07-05 10:13:40 -05:00
Will Dietz
600abbedc9 vampire: portability fixes
These have been submitted upstream,
but seconds before writing this message
so naturally no upstream response "yet" :).

Regardless of response, fetch patches
from the corresponding PR's for context
and of course hopefully they'll
be included in next version.
2018-07-05 10:13:32 -05:00
Will Dietz
8e6db30bb7 vampire: use CC/CXX from env, instead of always g++ 2018-07-05 10:11:32 -05:00
Gabriel Ebner
887b6fd793 qalculate-gtk: 2.5.0 -> 2.6.0 2018-07-05 12:33:27 +02:00
Gabriel Ebner
7c63a9cac2 eprover: 2.0 -> 2.1 2018-07-05 12:26:43 +02:00
Gabriel Ebner
57ae4e8d8e vampire: init at 4.2.2 2018-07-05 09:34:28 +02:00
R. RyanTM
5a859d9b10 stellarium: 0.18.0 -> 0.18.1 (#42949)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/stellarium/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1/bin/stellarium had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1/bin/.stellarium-wrapped had a zero exit code or showed the expected version
- 0 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 0.18.1 with grep in /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1
- directory tree listing: https://gist.github.com/dd98359fb1214ae24bd70e291c1bc33d
- du listing: https://gist.github.com/67baedda5ffc1ad0aa064239cb503c2b
2018-07-05 00:24:22 +02:00
Michael Raskin
04bd737062
Merge pull request #43026 from r-ryantm/auto-update/clingo
clingo: 5.2.2 -> 5.3.0
2018-07-04 21:01:39 +00:00
R. RyanTM
a431e4f207 clingo: 5.2.2 -> 5.3.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/clingo/versions.

Version release notes (from GitHub):
# Packages

- The easiest way to obtain Python enabled clingo packages is using [Anaconda][ana]. Packages are available in the [Potassco channel][pch]. First [install either Anaconda or Miniconda][ins] and then run: `conda install -c potassco clingo`.
- Packages for clingo are available in the Linux distributions [Debian][deb], [Ubuntu][ubu], and [Arch Linux (AUR)][aur].
- For Mac OS X, clingo packages are available in [homebrew][hbr] and [macports][mac].

# Changes

* change C API to use numeric instead of symbolic literals
  * affects assumptions and assigning/releasing externals (breaks backward compatibility)
  * added overloads to C++, python and lua API to support both numeric and symbolic version (preserves backward compatibility for most code)
* the python, C and C++ APIs now allow for customizing clingo by implementing a custom main function but reusing the rest of the application including the standard output
* add API function to detect conflicting programs
* add message logger to python and lua interface
* add support for primes in the beginning of identifiers and variable names
* add per solver registration of watches during propagator initialization
* add a directive to selectivel suppress undefined atom warnings
* add support for user defined statistics
* add _to_c functions for python API to be able to call C functions from python
* only create ground representations for requested program parts when grounding (#71)
* improve program observer (#19)
* support for binary, octal, and hexadecimal numbers (#65)
* the backend has to be opened/closed now
* release python's GIL while grounding (#82)
* TruthValue.{True,False} becomes TruthValue.{\_True,\_False} in python API
* improve API and it's documentation

[deb]: https://www.debian.org/
[ubu]: https://www.ubuntu.com/
[aur]: https://aur.archlinux.org/
[hbr]: https://brew.sh/
[mac]: https://www.macports.org/
[ana]: https://conda.io
[pch]: https://anaconda.org/potassco/clingo
[ins]: https://conda.io/docs/user-guide/install/index.html

These checks were done:

- built on NixOS
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/lpconvert passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/clasp passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/reify passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/gringo passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/clingo passed the binary check.
- 5 of 5 passed binary check by having a zero exit code.
- 0 of 5 passed binary check by having the new version present in output.
- found 5.3.0 with grep in /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0
- directory tree listing: https://gist.github.com/bba2eaf1d132fbdd88a2710a6030c419
- du listing: https://gist.github.com/230340bfa02557290a60cfc6d2e7e977
2018-07-04 11:23:33 -07:00
Silvan Mosberger
fac943fc81
Merge pull request #42897 from fragamus/master
add bliss package
2018-07-04 13:59:41 +02:00
Michael Gough
e3ea685957 bliss: init at 0.73 2018-07-04 11:33:10 +00:00
Timo Kaufmann
dcc1013f6b pythonPackages.backports_shutil_get_terminal_size: 1.0 -> 2016-02-21 (#42840) 2018-07-02 18:03:05 +02:00
Sarah Brofeldt
f06ce58323
Merge pull request #42843 from fragamus/master
hmetis: init at 1.5
2018-07-02 11:40:41 +02:00
Peter Simons
cbc1a03ab8 R: update to version 3.5.1
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
2018-07-02 11:33:50 +02:00
Michael Gough
f180facaa0 hmetis: init at 1.5 2018-07-01 18:29:55 +00:00
Michael Raskin
055a29c4a1
Merge pull request #39981 from timokau/sage-on-nixos
Sage on nixos
2018-07-01 07:37:42 +00:00
Timo Kaufmann
70ba695777 sage: replace JUPYTER_PATH patch by upstream patch
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
2018-06-30 22:30:30 +02:00
Timo Kaufmann
398dad270a sage, arb: update sage dependencies arb and pynac
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
2018-06-30 17:05:56 +02:00
Luz
f6a2869031 librepcb-unstable: 2017-12-29 -> 2018-06-28 (#42786)
* Update: 2017-12-29 -> 2018-06-28

* Update libs also to qt5.9

* Add required default font file

* Switch back to default Qt version
2018-06-30 13:56:12 +02:00
Ryan Mulligan
1d54dc6841 treewide: http -> https 2018-06-29 17:18:27 -07:00
Timo Kaufmann
17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann
424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00
Théo Zimmermann
314eb884ec
coq_8_8: 8.8.0 -> 8.8.1 2018-06-29 11:10:31 +02:00
Matthew Bauer
2171fc4d55
Merge pull request #42590 from TimPut/openmvsbuildfix
openmvs: build with CGAL 4.12
2018-06-28 22:33:40 -04:00
Matthew Bauer
e714f85b2f
Merge pull request #41929 from smaret/gildas
gildas: init at 201806_a
2018-06-28 22:17:07 -04:00
Matthew Bauer
574883f665
Merge pull request #42571 from iimog/hmmer
hmmer: init at 3.1b2
2018-06-28 22:00:09 -04:00
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
Ryan Mulligan
fce8f26af6 treewide: http -> https (#42665) 2018-06-27 22:12:57 +02:00
R. RyanTM
d4f62f651f gromacs: 2018.1 -> 2018.2 (#42504)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gromacs/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC had a zero exit code or showed the expected version
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.bash passed the binary check.
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.zsh passed the binary check.
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.csh had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/demux.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/xplor2gmx.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx-completion.bash had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx passed the binary check.
- 3 of 9 passed binary check by having a zero exit code.
- 0 of 9 passed binary check by having the new version present in output.
- found 2018.2 with grep in /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2
- directory tree listing: https://gist.github.com/1679f0362dfcc7299a6d5b8d9e76c14e
- du listing: https://gist.github.com/2f848bb0fe181676c17b61a9d5a94953
2018-06-27 19:02:19 +02:00
Timo Kaufmann
9ce041a8c7 pynac: 0.7.21 -> 0.7.22 (#42650) 2018-06-27 15:41:29 +02:00
Timo Kaufmann
2b22ecf01e palp: restrict platforms to linux (#42651) 2018-06-27 15:28:39 +02:00
Timo Kaufmann
08a59bb10d palp: fix runtime error introduced by #28029 (#42633)
After #28029 it is necessary to add "strictoverflow" to the disabled
hardening flags. That probably has something to do with the `-O3` option
in palps makefile.

This commit also adds a test to check for this regression (as it only
occured at runtime).
2018-06-27 09:42:26 +02:00
tim put
385114da68 openmvs: fix CGAL 4.12 dependency
patch executables with openMVS library path
2018-06-26 21:55:15 -06:00
Sebastien Maret
7b01e2b7d6 gildas: use internal LAPACK instead of OpenBLAS
Gildas' uv_fit task segfaults when it uses OpenBLAS. Use internal
LAPACK version instead.
2018-06-26 17:15:51 +02:00
Sebastien Maret
ba2f45c182 gildas: use the standard installPhase 2018-06-26 11:09:45 +02:00
Sebastien Maret
8603f343a3 gildas: init at 201806_a 2018-06-26 11:09:45 +02:00
tim put
a47a16a887 openmvg: 1.1 -> 1.3 2018-06-25 16:12:26 -06:00
Markus Ankenbrand
851ab7f323 hmmer: init at 3.1b2 2018-06-25 16:56:21 +02:00
xeji
c51ac5eb33
Merge pull request #42423 from ryantm/repology-problems
treewide: http -> https
2018-06-24 20:44:50 +02:00
Maximilian Bosch
8cf8c4bac2 stellarium: 0.16.1 -> 0.18.0 (#42357) 2018-06-24 20:26:58 +02:00
Matthew Justin Bauer
e09861f11f
gravit: fix eval 2018-06-23 17:35:31 -04:00
Matthew Justin Bauer
9bfd3ade2e
gravit: only build on linux 2018-06-23 17:33:25 -04:00
Ryan Mulligan
0d5eb901ad treewide: http -> https 2018-06-23 04:34:55 -07:00
R. RyanTM
b75e083c69 verilator: 3.922 -> 3.924
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/verilator/versions.

These checks were done:

- built on NixOS
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_bin passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_bin_dbg passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_coverage_bin_dbg passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_coverage passed the binary check.
- Warning: no invocation of /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_profcfunc had a zero exit code or showed the expected version
- 5 of 6 passed binary check by having a zero exit code.
- 0 of 6 passed binary check by having the new version present in output.
- found 3.924 with grep in /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924
- directory tree listing: https://gist.github.com/eebd214973454154b716fc6a9556b922
- du listing: https://gist.github.com/cb78abec038b5abdae8004ea1edcefc0
2018-06-19 10:14:47 -05:00
Timothée Jourde
cb597c229b openspace: init at 0.11.1
This adds a new package: OpenSpace, an open source astrovisualization
project, and one of its dependencies: SOIL (Simple OpenGL Image
Library).

This kind of works for me, but please note that this build is not very
usable for now. This is a first attempt. Also, Linux doesn't seem to
be well supported upstream, hence the various patches (I will open an
issue upstream to discuss them).

Squashed commits:
openspace: fetch upstream glm "patch"
openspace: add missing dependency (libXxf86vm)
soil: mesa -> mesa_noglu
2018-06-19 02:59:23 +02:00
R. RyanTM
b3052440f6 picard-tools: 2.18.5 -> 2.18.7 (#41975)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/siklhy9pl9xl9cq3nlqhln038554h72g-picard-tools-2.18.7/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.7 with grep in /nix/store/siklhy9pl9xl9cq3nlqhln038554h72g-picard-tools-2.18.7
- directory tree listing: https://gist.github.com/a49ed5f2ff312ce6180174183901e38f
- du listing: https://gist.github.com/243f4d89d2100ef27d332e3562d5f173
2018-06-18 22:41:49 +02:00
R. RyanTM
d97f7d3b89 raxml: 8.2.11 -> 8.2.12 (#41964)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/RAxML/versions.

These checks were done:

- built on NixOS
- /nix/store/w8iy7fvdwhjw7zx1dkga3v56fz59s7r8-RAxML-8.2.12/bin/raxmlHPC-PTHREADS-SSE3 passed the binary check.
- 1 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 8.2.12 with grep in /nix/store/w8iy7fvdwhjw7zx1dkga3v56fz59s7r8-RAxML-8.2.12
- directory tree listing: https://gist.github.com/8a2b70b299e53bfee9f18d2ab8cd5f9f
- du listing: https://gist.github.com/02803409663f19671adc6be233a327fd
2018-06-18 22:40:49 +02:00
Maximilian Bosch
0dbfa47ed1 geogebra: 5-0-444-0 -> 5-0-472-0 (#41990)
Bumped to the latest version available.

Also tested the `web.archive.org` backup to avoid broken downloads when
the tarball is removed from the official download mirror.
2018-06-17 18:04:14 +02:00
spacefrogg
0b475d300c ngspice: Fix regression due to missing X libs (#41890) 2018-06-13 13:48:15 +02:00
spacefrogg
0cc4396818 xcircuit: init at 3.9.73 (#41891) 2018-06-13 13:21:34 +02:00
Ben Gamari
f4d4f5e65a kicad-unstable: 2018-03-10 -> 2018-06-12 2018-06-12 20:15:51 -04:00
Matthew Justin Bauer
cc42186614
Merge pull request #41668 from r-ryantm/auto-update/ngspice
ngspice: 27 -> 28
2018-06-10 19:08:30 -04:00
R. RyanTM
d50e65b346 pynac: 0.7.19 -> 0.7.21 (#41662)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pynac/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.7.21 with grep in /nix/store/883yhmfc1k4vz1dd37l73v7clvnyaa3v-pynac-0.7.21
- directory tree listing: https://gist.github.com/a0f53cebb1c4cae07c81edef938ac632
- du listing: https://gist.github.com/78800724710d0766e4add7ed1847c3fc
2018-06-08 19:02:38 +02:00
Jörg Thalheim
2e26c117eb
Merge pull request #41689 from r-ryantm/auto-update/gromacs
gromacs: 2018 -> 2018.1
2018-06-08 17:17:52 +01:00