Weijia Wang
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66aedfd010
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Merge pull request #246815 from r-ryantm/auto-update/veryfasttree
veryfasttree: 4.0.1 -> 4.0.2
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2023-08-02 21:56:37 +02:00 |
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Weijia Wang
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e4e313aeff
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Merge pull request #246485 from r-ryantm/auto-update/bcftools
bcftools: 1.17 -> 1.18
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2023-08-02 19:51:47 +02:00 |
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Pol Dellaiera
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9a772d7658
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veryfasttree: use finalAttrs pattern
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2023-08-02 18:51:11 +02:00 |
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R. Ryantm
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1fd16883d4
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veryfasttree: 4.0.1 -> 4.0.2
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2023-08-02 16:13:45 +00:00 |
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Weijia Wang
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23332e13fe
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Merge pull request #243407 from natsukium/paml/update
paml: 4.9j -> 4.10.7
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2023-08-01 22:09:44 +02:00 |
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R. Ryantm
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487c6ac2bd
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bcftools: 1.17 -> 1.18
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2023-08-01 03:38:31 +00:00 |
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R. Ryantm
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40b736f0e8
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last: 1456 -> 1460
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2023-07-25 04:34:13 +00:00 |
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github-actions[bot]
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449a683b10
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Merge master into staging-next
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2023-07-24 00:02:26 +00:00 |
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natsukium
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e54f06de69
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dssp: 4.3.1 -> 4.4.2
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.3.1...v4.4.2
Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.2
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2023-07-23 21:24:23 +09:00 |
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Tobias Mayer
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ba2ce6e73b
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various packages: pin boost179
Taken from PR #244831 and vcunat amended the miopen override.
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2023-07-22 16:54:22 +02:00 |
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R. Ryantm
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7a9d01d44c
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seqkit: 2.4.0 -> 2.5.0
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2023-07-17 11:15:14 +00:00 |
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natsukium
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d2c506948b
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paml: refactor
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2023-07-14 15:08:14 +09:00 |
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natsukium
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f6e2b68122
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paml: 4.9j -> 4.10.7
Diff: d59d538939 ...4.10.7
Changelog: https://github.com/abacus-gene/paml/releases/tag/4.10.7
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2023-07-14 15:08:08 +09:00 |
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natsukium
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7cec88e50f
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delly: enable openmp
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2023-07-14 00:20:20 +09:00 |
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natsukium
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ae95c0d5a5
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delly: refactor
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2023-07-14 00:18:27 +09:00 |
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natsukium
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61be2ca18a
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delly: enable darwin support
- add passthru.tests
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2023-07-13 23:54:39 +09:00 |
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R. Ryantm
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b5e04f0bc7
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kallisto: 0.48.0 -> 0.50.0
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2023-07-09 17:19:43 +00:00 |
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Weijia Wang
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6d506a9d51
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Merge pull request #242302 from r-ryantm/auto-update/nest-mpi
nest-mpi: 3.4 -> 3.5
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2023-07-09 12:21:22 +03:00 |
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R. Ryantm
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ead7b7800d
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nest-mpi: 3.4 -> 3.5
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2023-07-08 16:03:30 +00:00 |
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R. Ryantm
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47d5bee543
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veryfasttree: 4.0 -> 4.0.1
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2023-07-08 07:27:05 +00:00 |
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Weijia Wang
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1e0d363214
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Merge pull request #241136 from r-ryantm/auto-update/veryfasttree
veryfasttree: 3.1.1 -> 4.0
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2023-07-03 17:17:51 +03:00 |
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Weijia Wang
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82d4f6b43d
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veryfasttree: fix build on darwin
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2023-07-03 12:29:44 +03:00 |
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Martin Weinelt
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bb40b8c205
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Merge pull request #235322 from natsukium/dssp/update
dssp: 4.2.2.1 -> 4.3.1; libcifpp: 5.0.8 -> 5.1.0.1; libmcfp: 1.2.3 -> 1.2.4
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2023-07-02 23:12:49 +02:00 |
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figsoda
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50acc2d57a
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pkgs/applications: replace "${version}" with version
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2023-07-02 14:39:50 -04:00 |
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R. Ryantm
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cb16c50571
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veryfasttree: 3.1.1 -> 4.0
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2023-07-02 15:55:36 +00:00 |
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natsukium
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7b49fced0f
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dssp: fix format
- add changelog to meta
- use finalAttrs
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2023-07-01 16:40:29 +09:00 |
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natsukium
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fba5a4d702
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dssp: 4.2.2.1 -> 4.3.1
Diff: https://github.com/PDB-REDO/dssp/compare/v4.2.2.1...v4.3.1
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2023-07-01 16:36:36 +09:00 |
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R. Ryantm
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abfcd95c63
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mosdepth: 0.3.3 -> 0.3.4
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2023-06-28 10:52:42 +00:00 |
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Weijia Wang
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826bdb7214
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Merge pull request #239691 from r-ryantm/auto-update/diamond
diamond: 2.1.7 -> 2.1.8
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2023-06-26 07:46:03 +02:00 |
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R. Ryantm
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fa6b5a3cb3
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last: 1453 -> 1456
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2023-06-25 11:01:07 -03:00 |
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R. Ryantm
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754d578555
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diamond: 2.1.7 -> 2.1.8
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2023-06-25 04:35:30 +00:00 |
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Mario Rodas
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2bd4a56ee1
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Merge pull request #237950 from bcdarwin/bppsuite-fix-homepage
bppsuite: fix homepage
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2023-06-16 18:28:27 -05:00 |
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Ben Darwin
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9120f78e06
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bppsuite: fix homepage
Old homepage is down, so point to GitHub instead.
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2023-06-15 12:18:11 -04:00 |
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natsukium
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7b36afffd6
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kalign: init at 3.3.5
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2023-06-14 21:05:58 +09:00 |
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natsukium
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3d1b9f0819
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macs2: rename from MACS2
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2023-06-13 21:47:47 +00:00 |
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natsukium
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12cab182ae
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MACS2: 2.2.7.1 -> 2.2.8
Diff: https://github.com/macs3-project/MACS/compare/v2.2.7.1...v2.2.8
changelog: https://github.com/macs3-project/MACS/releases/tag/v2.2.8
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2023-06-13 21:47:47 +00:00 |
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natsukium
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597e4e8652
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aragorn: fix format
- use finalAttrs instead of rec
- add runHook
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2023-06-08 18:42:29 +09:00 |
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natsukium
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bb317093e8
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aragorn: 1.2.38 -> 1.2.41
- change the source and homepage
- change the license
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2023-06-08 18:42:24 +09:00 |
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Weijia Wang
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bff97d5215
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Merge pull request #235727 from r-ryantm/auto-update/diamond
diamond: 2.1.6 -> 2.1.7
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2023-06-04 19:10:45 +02:00 |
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R. Ryantm
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1f231abe57
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fastp: 0.23.3 -> 0.23.4
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2023-06-04 03:21:21 +00:00 |
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R. Ryantm
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33d8777af9
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diamond: 2.1.6 -> 2.1.7
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2023-06-03 08:46:43 +00:00 |
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R. Ryantm
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7c4e31bb4c
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igv: 2.16.0 -> 2.16.1
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2023-05-31 13:33:15 +00:00 |
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R. Ryantm
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71a23afb45
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iqtree: 2.2.2.4 -> 2.2.2.6
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2023-05-30 01:13:17 +00:00 |
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R. Ryantm
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bebbc418d4
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seqtk: 1.3 -> 1.4
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2023-05-28 06:48:51 +00:00 |
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R. Ryantm
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216e1726da
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blast: 2.13.0 -> 2.14.0
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2023-05-26 00:23:49 +00:00 |
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figsoda
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8014b08ee0
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treewide/applications: use top-level fetchPypi
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2023-05-25 10:51:30 -04:00 |
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Weijia Wang
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6d71b5d6de
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iqtree: set platforms
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2023-05-22 11:14:57 +03:00 |
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R. Ryantm
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b36979ec74
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iqtree: 2.2.0.4 -> 2.2.2.4
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2023-05-22 04:48:16 +00:00 |
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Weijia Wang
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7c6ca2791b
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Merge pull request #231635 from natsukium/bwa/build-on-aarch64
bwa: 0.7.17 -> unstable-2022-09-23
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2023-05-18 01:10:14 +03:00 |
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Nick Cao
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906c7dd78c
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Merge pull request #231975 from jbedo/fastp
fastp: 0.23.2 -> 0.23.3
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2023-05-15 05:11:28 -06:00 |
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