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445,492 Commits 96 Branches 102 Tags 4.5 GiB
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848 Commits

Author SHA1 Message Date
github-actions[bot]
33aa224777
Merge master into staging-next 2023-01-09 18:01:24 +00:00
R. Ryantm
e0db41ab1a ants: 2.4.2 -> 2.4.3 2023-01-09 09:48:53 -06:00
Robert Schütz
b3241be75d python310Packages.levenshtein: don't use alias 2023-01-09 06:09:31 -08:00
R. Ryantm
605d013aac igv: 2.15.1 -> 2.15.4 2023-01-03 14:36:54 +08:00
Ben Darwin
9c748218f2 itk: unstable -> 5.3.0 2022-12-27 09:06:37 +01:00
Sandro
b20fb264cc
Merge pull request #197575 from thyol/sratoolkit-init 2022-12-24 02:58:47 +01:00
Weijia Wang
fa19b16e93 ecopcr: 0.8.0 -> 1.0.1 2022-12-08 04:35:53 +01:00
Jonas Heinrich
20193b6d86
Merge pull request #202395 from thyol/muscle 
muscle: 3.8.31 -> 5.1.0
 2022-11-24 15:47:12 +01:00
Jonas Heinrich
57728b51cf
Merge pull request #202404 from thyol/veryfasttree 
veryfasttree: init at 3.1.1
 2022-11-24 15:14:13 +01:00
thyol
cdcb7946ba veryfasttree: init at 3.1.1 2022-11-22 20:45:45 +01:00
thyol
35d3a6fa79 muscle: add myself to maintainers 2022-11-22 20:19:17 +01:00
thyol
d7c8595f62 muscle: 3.8.31 -> 5.1.0 2022-11-22 20:19:17 +01:00
thyol
81d6f1c7dc sratoolkit: init at 2.11.3 2022-11-21 20:27:28 +01:00
R. Ryantm
6ba0d20487 igv: 2.14.1 -> 2.15.1 2022-11-20 14:06:29 +08:00
R. Ryantm
c7ba9b459c delly: 1.1.5 -> 1.1.6 2022-11-08 18:21:37 +00:00
Justin Bedő
3a90ab68e6
Merge pull request #197631 from jbedo/octopus 
octopus-caller: backport patch to fix build
 2022-11-07 21:26:21 +00:00
Bruno Bzeznik
9243a44c9c seqkit: init at 2.3.1 2022-11-04 08:51:32 +01:00
Stanisław Pitucha
9ed8ce7ff3
Merge pull request #198609 from natsukium/mmseqs2/init 
mmseqs2: init at 14-7e284
 2022-11-01 21:47:20 +11:00
natsukium
ed7511ad02
mmseqs2: init at 14-7e284 2022-10-31 23:49:10 +09:00
Justin Bedo
5f5bb45093
octopus-caller: backport patch to fix build 2022-10-25 09:52:28 +11:00
OPNA2608
982a1bfd80 sambamba: fix compilation on Darwin, cleanup installPhase 2022-10-23 16:12:47 +02:00
Jan Tojnar
457f28f6f8 Merge branch 'master' into staging-next 
; Conflicts:
;	pkgs/development/tools/codespell/default.nix

codespell 2.2.2 switched to pyproject & setuptools_scm:
https://github.com/codespell-project/codespell/pull/2523
 2022-10-19 05:24:28 +02:00
R. Ryantm
4ab06e3223 ants: 2.4.1 -> 2.4.2 2022-10-19 09:19:31 +08:00
github-actions[bot]
f52955a521
Merge master into staging-next 2022-10-16 18:01:42 +00:00
R. Ryantm
00b3b4ee24 gatk: 4.2.6.1 -> 4.3.0.0 2022-10-16 21:48:30 +08:00
Martin Weinelt
51fcbf5bb7 Merge remote-tracking branch 'origin/master' into staging-next 2022-10-16 00:18:40 +02:00
Jonas Heinrich
9259c4b841
Merge pull request #195990 from r-ryantm/auto-update/angsd 
angsd: 0.938 -> 0.940
 2022-10-15 09:33:23 +02:00
github-actions[bot]
886633ba43
Merge master into staging-next 2022-10-15 00:04:00 +00:00
R. Ryantm
4cee9b9ddb angsd: 0.938 -> 0.940 2022-10-14 14:50:26 +00:00
Artturi
e66d2fd89d
Merge pull request #194256 from Artturin/treewides2 2022-10-13 00:08:01 +03:00
Markus S. Wamser
c9d167f174 pkgs.applications: remove unused args 2022-10-12 16:00:16 +02:00
Martin Weinelt
cf7f4393f3
Merge pull request #193494 from NixOS/staging-next 2022-10-11 01:12:59 +02:00
Alexis Praga
2ce78bd571 gatk: add java and python to PATH 
gatk is actually a python script that starts either the local or spark
.jar file according to a fixed setup.
In the initial commit, neither java nor python were present in PATH.
 2022-10-10 23:06:01 +02:00
Artturin
7e49471316 treewide: optional -> optionals where the argument is a list 
the argument to optional should not be list
 2022-10-10 15:40:21 +03:00
github-actions[bot]
f18d801779
Merge staging-next into staging 2022-09-28 18:05:53 +00:00
R. Ryantm
ddf9f1800a delly: 1.1.3 -> 1.1.5 2022-09-27 11:26:09 +00:00
Artturin
0734f54ef2 treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs 
found with nixpkgs-lint
 2022-09-26 17:53:26 +03:00
Justin Bedő
d21b5ac044
Merge pull request #192211 from r-ryantm/auto-update/last 
last: 1409 -> 1411
 2022-09-26 11:49:30 +10:00
Brad Langhorst
2beb26b45b seqtk: init at 1.3 
Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
 2022-09-25 19:55:58 -04:00
R. Ryantm
1008651931 last: 1409 -> 1411 2022-09-21 08:24:01 +00:00
Christian Kögler
e06e88d003
Merge pull request #189923 from r-ryantm/auto-update/igv 
igv: 2.14.0 -> 2.14.1
 2022-09-18 15:59:16 +02:00
R. Ryantm
9da745bfaf messer-slim: 4.0 -> 4.0.1 2022-09-15 22:25:51 +00:00
Sandro
785031e430
Merge pull request #185819 from apraga/gatk-4.2.6.1 2022-09-10 21:31:42 +02:00
natsukium
9e65d09e3d
mafft: 7.505 -> 7.508 
changed to fetch from new gitlab repository
 2022-09-09 13:26:38 +09:00
R. Ryantm
c7832514ef igv: 2.14.0 -> 2.14.1 2022-09-05 22:29:15 +00:00
Sandro
ef987a9604
Merge pull request #189329 from bcdarwin/itk4-removal 2022-09-05 16:05:51 +02:00
Sandro
73bf7a0ca0
Merge pull request #181954 from bzizou/treemix 2022-09-05 15:57:48 +02:00
Bruno Bzeznik
7c09cfdc1a treemix: init at 1.13 2022-09-05 06:55:03 +02:00
Jonas Heinrich
eb3d3b2e90
Merge pull request #175449 from bzizou/iqtree 
iqtree: init at 2.2.0.4
 2022-09-04 23:58:04 +02:00
Ben Darwin
1280129aab EZminc: itk4 -> itk (formally; package is broken) 2022-09-04 13:36:24 -04:00