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3931 Commits

Author SHA1 Message Date
R. RyanTM
aea6594c69 marvin: 20.17.0 -> 20.19.0 2020-11-03 04:38:29 +00:00
Mario Rodas
98bf2ceb68
Merge pull request #102464 from r-ryantm/auto-update/igv 
igv: 2.8.9 -> 2.8.11
 2020-11-02 18:21:36 -05:00
Timo Kaufmann
9560149052
Merge pull request #102479 from r-ryantm/auto-update/jmol 
jmol: 14.31.3 -> 14.31.14
 2020-11-02 19:31:29 +01:00
R. RyanTM
ccabae32dd gtkwave: 3.3.106 -> 3.3.107 2020-11-02 08:26:41 -08:00
R. RyanTM
41e1c236bf cytoscape: 3.8.1 -> 3.8.2 2020-11-02 08:20:13 -08:00
R. RyanTM
3d40283367 jmol: 14.31.3 -> 14.31.14 2020-11-02 12:07:07 +00:00
R. RyanTM
8ef46be2a4 igv: 2.8.9 -> 2.8.11 2020-11-02 10:16:32 +00:00
Pavol Rusnak
2c931312ce treewide: simplify rev/repo arguments in src 
+ use fetchFromGithub where possible
 2020-11-01 23:02:24 -08:00
freezeboy
1f7e201e9e plink: remove (broken since 2014) 2020-11-02 03:24:16 +01:00
R. RyanTM
036cec187c ginac: 1.7.9 -> 1.8.0 2020-11-01 17:19:05 -08:00
Frederik Rietdijk
83dde6c52c Merge staging-next into staging 2020-11-01 10:11:12 +01:00
R. RyanTM
afa6047e12 gromacs: 2020.3 -> 2020.4 2020-11-01 00:24:33 +00:00
Vincent Laporte
8cab21b48b Revert "coq: propagate and install ocaml and findlib" 
This reverts commit 5d0e2dedd5.
 2020-10-31 09:08:06 +01:00
Justin Bedo
32573f4b6e
last: 1066 -> 1133 2020-10-31 10:59:02 +11:00
Maximilian Bosch
952dc5c7ff
Merge pull request #101421 from sikmir/geogebra 
geogebra: 5-0-593-0 -> 5-0-609-0, geogebra6: 6-0-600-0 -> 6-0-609-0
 2020-10-30 23:39:37 +01:00
Renato Alves
6e19ed0a52
lumpy: 0.3.0 -> 0.3.1 2020-10-30 01:28:00 +01:00
Renato Alves
a28e5b0a4f
samtools: 1.10 -> 1.11 2020-10-29 18:27:22 +01:00
Andreas Rammhold
db0fe5c3eb
Merge branch master into staging to fix eval error 
This fixes the eval error of the small (and "big"?) NixOS test set that
was fixed in 1088f05 & eba8f542.
 2020-10-28 03:03:27 +01:00
Ben Siraphob
db74029e3e treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
Masanori Ogino
40fb3ed6dc maxima: remove 5.41.0 
It had been kept for SageMath, but it uses the default version nowadays
and this version is not referenced in nixpkgs.

Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-10-27 06:09:12 +09:00
Maximilian Bosch
61fa498994
Merge pull request #101646 from luc65r/pkg/rofi-calc 
rofi-calc: 1.8 -> 1.9
 2020-10-26 16:36:43 +01:00
Ryan Mulligan
4fce633319
Merge pull request #101716 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.1.2 -> 3.1.3
 2020-10-26 05:43:38 -07:00
Vladimír Čunát
336bc8283b
Re-Revert "Merge #101508: libraw: 0.20.0 -> 0.20.2" 
This reverts commit c778945806.

I believe this is exactly what brings the staging branch into
the right shape after the last merge from master (through staging-next);
otherwise part of staging changes would be lost
(due to being already reachable from master but reverted).
 2020-10-26 08:19:17 +01:00
R. RyanTM
250757970b openhantek6022: 3.1.2 -> 3.1.3 2020-10-26 00:37:51 +00:00
Peter Simons
40bc6c8dad
Merge pull request #100393 from matthiasbeyer/update-r 
R: 4.0.2 -> 4.0.3
 2020-10-25 21:57:03 +01:00
Lucas Ransan
2436e41916 rofi-calc: 1.8 -> 1.9 2020-10-25 14:31:57 +01:00
Vladimír Čunát
c778945806
Revert "Merge #101508: libraw: 0.20.0 -> 0.20.2" 
I'm sorry; I didn't notice it contained staging commits.

This reverts commit 17f5305b6c, reversing
changes made to a8a018ddc0.
 2020-10-25 09:41:51 +01:00
Vladimír Čunát
17f5305b6c
Merge #101508: libraw: 0.20.0 -> 0.20.2 2020-10-25 09:28:53 +01:00
Nikolay Korotkiy
a2472ebfb1
geogebra: 5-0-593-0 -> 5-0-609-0, geogebra6: 6-0-600-0 -> 6-0-609-0 2020-10-23 19:25:11 +03:00
Vincent Laporte
2cb651ad14 cryptoverif: 2.01pl1 → 2.03pl1 2020-10-23 10:20:09 +02:00
Anderson Torres
253fb7648c
Merge pull request #101244 from zaninime/nanovna-saver 
nanovna-saver: init at 0.3.7
 2020-10-22 20:42:56 -03:00
Jan Tojnar
3e01d383ee
Merge branch 'staging-next' into staging 2020-10-22 21:20:32 +02:00
Francesco Zanini
2a54c4f950 nanovna-saver: init at 0.3.7 2020-10-22 16:23:13 +02:00
Daiderd Jordan
bb0b872b61
Merge pull request #100388 from thefloweringash/darwin-dylib-names-hook 
treewide: move fixDarwinDylibNames to nativeBuildInputs
 2020-10-21 19:25:48 +02:00
Théo Zimmermann
5d0e2dedd5 coq: propagate and install ocaml and findlib 
Fix #34657.
 2020-10-21 11:07:02 +02:00
markuskowa
4eb5b1285c
Merge pull request #101065 from markuskowa/fix-molcas 
openmolcas: 19.11 -> 20.10
 2020-10-21 09:37:28 +02:00
Andrew Childs
722d02a720 treewide: move fixDarwinDylibNames to nativeBuildInputs 
This hook runs at build time and depends on executing
install_name_tool from binutils.
 2020-10-21 13:26:53 +09:00
Austin Seipp
fba7eaeb63
Merge pull request #100741 from arcz/btor2tools 
btor2tools: enable unix platforms
 2020-10-19 16:18:56 -05:00
Markus Kowalewski
2eee4e4eac
openmolcas: 19.11 -> 20.10 2020-10-19 14:13:08 +02:00
Markus Kowalewski
8b02ff6b8e
openmolcas: fix build w.r.t. openblas 
Fall out from switching openblas over to multiple outputs:
https://github.com/NixOS/nixpkgs/pull/98337
 2020-10-19 14:00:48 +02:00
Masanori Ogino
096ef94717 gfan: fix build failures with cddlib v0.94l 
It fixes https://github.com/NixOS/nixpkgs/issues/100622.

Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-10-19 10:29:01 +09:00
Gabriel Ebner
6d22203168
Merge pull request #101010 from r-ryantm/auto-update/lean 
lean: 3.19.0 -> 3.21.0
 2020-10-18 20:10:42 +02:00
R. RyanTM
855b84d8b0 lean: 3.19.0 -> 3.21.0 2020-10-18 17:00:15 +00:00
Doron Behar
1693d00562
Merge pull request #85456 from matthuszagh/kicad-libraries 2020-10-17 20:31:38 +03:00
Ryan Mulligan
ed8a50fa13
Merge pull request #100548 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.19 -> 1.8.22
 2020-10-17 10:28:18 -07:00
Matt Huszagh
9320c69ecb kicad: set default footprint, symbol library and package locations 
Previously, these library locations were set absolutely. This
prevented overriding their locations with environment variables. Now,
setting the corresponding environment variable will override the
setting in the environment wrapper. For instance, I can set

KISYSMOD=/some/path/to/footprints

and this will be used as my footprint library instead of the default
footprint library in the nix store. This feature is particularly
useful for having kicad libraries which are writable.
 2020-10-17 09:32:55 -07:00
Ben Siraphob
683a87dbeb treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
Artur Cygan
5229b4502a btor2tools: enable unix platforms 2020-10-16 19:39:46 +02:00
Ryan Mulligan
f9728adae7
Merge pull request #99128 from jbedo/delly 
delly: 0.8.2 -> 0.8.5
 2020-10-16 06:30:11 -07:00
R. RyanTM
a3dca9576b deeptools: 3.4.1 -> 3.5.0 2020-10-16 00:42:47 -07:00
Doron Behar
1db3202722
Merge pull request #75843 from jbedo/lumpy 2020-10-15 19:46:13 +03:00
R. RyanTM
af82dfa808 mavproxy: 1.8.19 -> 1.8.22 2020-10-15 05:05:52 +00:00
Frederik Rietdijk
b981eca057 Merge master into staging-next 2020-10-14 11:32:49 +02:00
Anderson Torres
a9637e5b52
Merge pull request #100357 from AndersonTorres/zegrapher-new 
zegrapher: init at 3.1.1
 2020-10-13 15:14:04 -03:00
Frederik Rietdijk
9e1943edc0 Merge master into staging-next 2020-10-13 19:34:34 +02:00
Vincent Laporte
33b7529b01
tamarin-prover: 1.4.1 → 1.6.0 (#100148) 2020-10-13 10:16:11 +02:00
Matthias Beyer
ea4a13e573 R: 4.0.2 -> 4.0.3 
Signed-off-by: Matthias Beyer <mail@beyermatthias.de>
 2020-10-13 10:05:15 +02:00
AndersonTorres
1331d642e0 zegrapher: init at 3.1.1 2020-10-12 19:31:34 -03:00
Doron Behar
58b8ae4127
Merge pull request #100066 from matthuszagh/kicad-srcs 2020-10-12 22:55:16 +03:00
Matt Huszagh
f2cb2c447d kicad: add srcs parameter to allow configuring kicad versions 
This also exposes the full src and version parameters for each
derivation, allowing them to overrideable by srcs.
 2020-10-12 11:32:44 -07:00
Matt Huszagh
9d13164b27 kicad: Rename <feature>Support arguments to with<Feature> 
Also: Use assertions instead of silently ignoring arguments that don't cooperate
(occ+oce) / won't compile (aarch64 + oce).

base.nix no longer provides default argument values since these are
provided by default.nix.
 2020-10-12 11:32:04 -07:00
Anderson Torres
e61c9d185d
Merge pull request #100193 from AndersonTorres/big-upload 
A bunch of updates
 2020-10-12 08:48:52 -03:00
AndersonTorres
69c14beb04 gp2c: 0.0.11pl3 -> 0.0.11pl4 2020-10-12 04:07:03 -03:00
AndersonTorres
781753db45 pari: 2.11.3 -> 2.11.4 2020-10-12 04:07:03 -03:00
Claudio Bley
0f6b8b7964 fritzing: 0.9.3b -> 0.9.4 
Notes:

* fritzing still needs an older version of libgit2
* releases no longer directly correspond to tags in the git repository, they are
  using build numbers instead
* the fritzing-parts repository is no longer versioned at all, the master branch
  contains the latest stable release
* a `parts.db` file needs to be generated from the fritzing-parts files during
  the build
 2020-10-11 16:51:59 -07:00
Matt Huszagh
937c2597d9 ngspice: 31 -> 32 2020-10-11 16:10:33 +02:00
Wulfsta
77143fc628 mathematica: fix libQt errors 2020-10-11 15:49:11 +02:00
Gabriel Ebner
b03c6ef37d
Merge pull request #99503 from NieDzejkob/isabelle-z3-fix 2020-10-11 12:39:09 +02:00
Matt Huszagh
85d5195f70 kicad: remove unnecessary with lib; statements 2020-10-10 16:22:04 -07:00
Jan Tojnar
aabcf2d8f5
Merge branch 'master' into staging-next 2020-10-11 00:27:21 +02:00
Matt Huszagh
e2fea84597 kicad: clarify wrapGAppsHook comment 2020-10-10 15:15:43 -07:00
Matt Huszagh
b3e2b523e5 kicad: reformat with nixpkgs-fmt 2020-10-10 12:53:09 -07:00
Vladimír Čunát
338b25697c
Merge branch 'master' into staging-next 
Quite many rebuilds from master:
> Estimating rebuild amount by counting changed Hydra jobs.
>    3926 x86_64-darwin
>    4645 x86_64-linux
 2020-10-10 11:32:10 +02:00
Doron Behar
967a01f206
Merge pull request #100065 from matthuszagh/kicad 2020-10-10 12:28:09 +03:00
Daniel Schaefer
384470e23f
Merge pull request #99964 from guserav/horizon-eda 
horizon-eda: init at 1.2.1
 2020-10-10 11:49:07 +08:00
guserav
6a4c1972a2 horizon-eda: init at 1.2.1 
Mostly based on #86694 by yrashk
 2020-10-09 19:57:38 +02:00
Matt Huszagh
104aca941a kicad-unstable: 2020-08-22 -> 2020-10-09 
base.nix requires gtk3 to compile
 2020-10-09 07:36:42 -07:00
Matt Huszagh
b67afd8a44 kicad: modify update script to use gitlab for libraries 
Kicad libraries are now hosted on gitlab instead of github.
 2020-10-09 07:36:41 -07:00
Frederik Rietdijk
ec28e32c9e Merge master into staging-next 2020-10-08 21:47:26 +02:00
Dmitry Kalinkin
b0486f3171
pythia: 8.244 -> 8.303 2020-10-07 20:28:19 -04:00
Ben Darwin
e673c285e1 conglomerate: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin
44f2bf87d6 EZminc: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin
83d0571ae6 mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc 2020-10-06 15:31:17 -04:00
Ben Darwin
9a190786a4 n3: 2017-09-18 -> 2018-08-09 
- update LIBMINC_DIR and EBTKS_DIR due to CMake updates in those packages
 2020-10-06 15:31:16 -04:00
Ben Darwin
7772e248ab inormalize: update LIBMINC_DIR and dependencies due to libminc update 2020-10-06 15:31:16 -04:00
Ben Darwin
91a429a148 minc_tools: unstable-2019-12-04 -> unstable-2020-07-25 2020-10-06 15:31:14 -04:00
Frederik Rietdijk
692d219a93 Merge staging-next into staging 2020-10-06 10:25:58 +02:00
Jakub Kądziołka
8205e12a45
z3_4_4_0: add old version for Isabelle 2020-10-03 21:32:22 +02:00
Justin Bedo
d8d8f9390a
delly: 0.8.2 -> 0.8.5 2020-10-01 18:09:53 +10:00
Anderson Torres
5e99485b3d
Merge pull request #99214 from bcdarwin/update-mrtrix 
mrtrix: 3.0.0 -> 3.0.2
 2020-10-01 01:14:54 -03:00
Ben Darwin
a94d0fe675 mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
Vincent Laporte
cc739e1c67 ocamlPackages.z3: init at 4.8.9 2020-09-30 22:03:17 +02:00
Jan Tojnar
32b4375f10
Merge branch 'staging-next' into staging 2020-09-29 00:12:29 +02:00
Dmitry Kalinkin
dd57dcf2a5
stellarium: enable on darwin 2020-09-27 17:00:10 -04:00
Maximilian Bosch
b8d1e39a28
stellarium: 0.20.2 -> 0.20.3 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.3
 2020-09-27 22:09:36 +02:00
Matt Huszagh
6b9481607b openems: init at unstable-2020-02-15 2020-09-27 11:32:27 -07:00
Robert Scott
8db3ea1ef1
Merge pull request #98614 from r-burns/aragorn 
aragorn: fix build on darwin
 2020-09-25 19:58:10 +01:00
Dmitry Kalinkin
7867aafa51
Merge pull request #97613 from drewrisinger/zhf/verilog 
verilog: cleanup & test
 2020-09-25 10:37:34 -04:00
R. RyanTM
e66a7e2fb7 cytoscape: 3.8.0 -> 3.8.1 2020-09-25 04:38:49 +00:00
Jan Tojnar
d471c5d1f3
Merge branch 'staging-next' into staging 2020-09-24 23:09:00 +02:00