mirror of
https://github.com/ilyakooo0/nixpkgs.git
synced 2024-10-15 17:07:25 +03:00
73 lines
1.7 KiB
Nix
73 lines
1.7 KiB
Nix
{
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lib,
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stdenv,
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bzip2,
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cmake,
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fetchFromGitHub,
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fetchpatch,
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ncurses,
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python3,
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readline,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "spades";
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version = "4.0.0";
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src = fetchFromGitHub {
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owner = "ablab";
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repo = "spades";
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rev = "v${finalAttrs.version}";
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hash = "sha256-k2+ddJIgGE41KGZODovU9VdurbWerEtdqNrFDwyuFjo=";
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};
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sourceRoot = "${finalAttrs.src.name}/src";
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patches = [
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# https://github.com/ablab/spades/pull/1314
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(fetchpatch {
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name = "copytree.patch";
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url = "https://github.com/ablab/spades/commit/af1f756a46c5da669897b841d4f753af1eaa9588.patch";
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hash = "sha256-tkT7hb0TqsbLkcTs9u43nzvV8bVdh3G9VKYqFFLrQv8=";
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stripLen = 3;
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extraPrefix = "projects/";
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})
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];
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cmakeFlags = [
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"-DZLIB_ENABLE_TESTS=OFF"
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"-DSPADES_BUILD_INTERNAL=OFF"
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];
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preConfigure = ''
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# The CMakeListsInternal.txt file should be empty in the release tarball
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echo "" > CMakeListsInternal.txt
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'';
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nativeBuildInputs = [ cmake ];
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buildInputs = [
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bzip2
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ncurses
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python3
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readline
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];
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env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-faligned-allocation";
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doCheck = true;
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strictDeps = true;
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meta = {
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description = "St. Petersburg genome assembler, a toolkit for assembling and analyzing sequencing data";
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changelog = "https://github.com/ablab/spades/blob/${finalAttrs.version}/changelog.md";
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downloadPage = "https://github.com/ablab/spades";
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homepage = "http://ablab.github.io/spades";
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license = lib.licenses.gpl2Only;
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [ bzizou ];
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broken = stdenv.hostPlatform.isMusl;
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};
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})
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