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31 lines
1.3 KiB
Nix
31 lines
1.3 KiB
Nix
{stdenv, fetchurl, cpio}:
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# The NCBI package only builds on 32bits - on 64bits it breaks because
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# of position dependent code. Debian packagers have written replacement
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# make files(!). Either we use these, or negotiate a version which can
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# be pushed upstream to NCBI.
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#
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# Another note: you may want the older and deprecated C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz
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stdenv.mkDerivation rec {
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name = "ncbi_tools";
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ncbi_version="Dec_31_2008";
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src = fetchurl {
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url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz";
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sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr";
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};
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configureFlags = "--without-debug --with-bin-release --with-dll --without-static";
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# PIC flag (position independent code for shared libraries)
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NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else "";
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buildInputs = [cpio];
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meta = {
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description = ''NCBI Bioinformatics toolbox (incl. BLAST)'';
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longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support'';
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homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/;
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license = "GPL";
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priority = "5"; # zlib.so gives a conflict with zlib
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};
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}
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