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@ -365,6 +365,151 @@ on MNIST digits[DEEP LEARNING]
* [adam](https://github.com/bigdatagenomics/adam) - A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
* [bioscala](https://github.com/bioscala/bioscala) - Bioinformatics for the Scala programming language
<<<<<<< HEAD
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## Java
#### Natural Language Processing
* [CoreNLP] (http://nlp.stanford.edu/software/corenlp.shtml) - Stanford CoreNLP provides a set of natural language analysis tools which can take raw English language text input and give the base forms of words
* [Stanford Parser] (http://nlp.stanford.edu/software/lex-parser.shtml) - A natural language parser is a program that works out the grammatical structure of sentences
* [Stanford POS Tagger] (http://nlp.stanford.edu/software/tagger.shtml) - A Part-Of-Speech Tagger (POS Tagger
* [Stanford Name Entity Recognizer] (http://nlp.stanford.edu/software/CRF-NER.shtml) - Stanford NER is a Java implementation of a Named Entity Recognizer.
* [Stanford Word Segmenter] (http://nlp.stanford.edu/software/segmenter.shtml) - Tokenization of raw text is a standard pre-processing step for many NLP tasks.
* [Tregex, Tsurgeon and Semgrex](http://nlp.stanford.edu/software/tregex.shtml) - Tregex is a utility for matching patterns in trees, based on tree relationships and regular expression matches on nodes (the name is short for "tree regular expressions").
* [Stanford Phrasal: A Phrase-Based Translation System](http://nlp.stanford.edu/software/phrasal/)
* [Stanford English Tokenizer](http://nlp.stanford.edu/software/tokenizer.shtml) - Stanford Phrasal is a state-of-the-art statistical phrase-based machine translation system, written in Java.
* [Stanford Tokens Regex](http://nlp.stanford.edu/software/tokensregex.shtml) - A tokenizer divides text into a sequence of tokens, which roughly correspond to "words"
* [Stanford Temporal Tagger](http://nlp.stanford.edu/software/sutime.shtml) - SUTime is a library for recognizing and normalizing time expressions.
* [Stanford SPIED](http://nlp.stanford.edu/software/patternslearning.shtml) - Learning entities from unlabeled text starting with seed sets using patterns in an iterative fashion
* [Stanford Topic Modeling Toolbox](http://nlp.stanford.edu/software/tmt/tmt-0.4/) - Topic modeling tools to social scientists and others who wish to perform analysis on datasets
* [Twitter Text Java](https://github.com/twitter/twitter-text-java) - A Java implementation of Twitter's text processing library
* [MALLET](http://mallet.cs.umass.edu/) - A Java-based package for statistical natural language processing, document classification, clustering, topic modeling, information extraction, and other machine learning applications to text.
* [OpenNLP](https://opennlp.apache.org/) - a machine learning based toolkit for the processing of natural language text.
* [LingPipe](http://alias-i.com/lingpipe/index.html) - A tool kit for processing text using computational linguistics.
#### General-Purpose Machine Learning
* [MLlib in Apache Spark](http://spark.apache.org/docs/latest/mllib-guide.html) - Distributed machine learning library in Spark
* [Mahout](https://github.com/apache/mahout) - Distributed machine learning
* [Stanford Classifier](http://nlp.stanford.edu/software/classifier.shtml) - A classifier is a machine learning tool that will take data items and place them into one of k classes.
* [Weka](http://www.cs.waikato.ac.nz/ml/weka/) - Weka is a collection of machine learning algorithms for data mining tasks
* [ORYX](https://github.com/cloudera/oryx) - Simple real-time large-scale machine learning infrastructure.
* [0xdata H20](http://0xdata.com/h2o-2/) - Distributed machine learning.
#### Data Analysis / Data Visualization
* [Hadoop](https://github.com/apache/hadoop-mapreduce) - Hadoop/HDFS
* [Spark](https://github.com/apache/spark) - Spark is a fast and general engine for large-scale data processing.
* [Impala](https://github.com/cloudera/impala) - Real-time Query for Hadoop
## Go
#### Natural Language Processing
* [go-porterstemmer](https://github.com/reiver/go-porterstemmer) - A native Go clean room implementation of the Porter Stemming algorithm.
* [paicehusk](https://github.com/Rookii/paicehusk) - Golang implementation of the Paice/Husk Stemming Algorithm
* [snowball](https://bitbucket.org/tebeka/snowball) - Snowball Stemmer for Go.
#### General-Purpose Machine Learning
* [Go Learn](https://github.com/sjwhitworth/golearn) - Machine Learning for Go
* [go-pr](https://github.com/daviddengcn/go-pr) - Pattern recognition package in Go lang.
* [bayesian](https://github.com/jbrukh/bayesian) - Naive Bayesian Classification for Golang.
* [go-galib](https://github.com/thoj/go-galib) - Genetic Algorithms library written in Go / golang
#### Data Analysis / Data Visualization
* [go-graph](https://github.com/StepLg/go-graph) - Graph library for Go/golang language.
* [SVGo](http://www.svgopen.org/2011/papers/34-SVGo_a_Go_Library_for_SVG_generation/) - The Go Language library for SVG generation
## Matlab
#### Computer Vision
* [Contourlets](http://www.ifp.illinois.edu/~minhdo/software/contourlet_toolbox.tar) - MATLAB source code that implements the contourlet transform and its utility functions.
* [Shearlets](http://www.shearlab.org/index_software.html) - MATLAB code for shearlet transform
* [Curvelets](http://www.curvelet.org/software.html) - The Curvelet transform is a higher dimensional generalization of the Wavelet transform designed to represent images at different scales and different angles.
* [Bandlets](http://www.cmap.polytechnique.fr/~peyre/download/) - MATLAB code for bandlet transform
#### Natural Language Processing
* [NLP](https://amplab.cs.berkeley.edu/2012/05/05/an-nlp-library-for-matlab/) - An NLP library for Matlab
#### General-Purpose Machine Learning
* [Training a deep autoencoder or a classifier
on MNIST digits](http://www.cs.toronto.edu/~hinton/MatlabForSciencePaper.html) - Training a deep autoencoder or a classifier
on MNIST digits[DEEP LEARNING]
* [t-Distributed Stochastic Neighbor Embedding](http://homepage.tudelft.nl/19j49/t-SNE.html) - t-Distributed Stochastic Neighbor Embedding (t-SNE) is a (prize-winning) technique for dimensionality reduction that is particularly well suited for the visualization of high-dimensional datasets.
* [Spider](http://people.kyb.tuebingen.mpg.de/spider/) - The spider is intended to be a complete object orientated environment for machine learning in Matlab.
* [LibSVM](http://www.csie.ntu.edu.tw/~cjlin/libsvm/#matlab) - A Library for Support Vector Machines
* [LibLinear](http://www.csie.ntu.edu.tw/~cjlin/liblinear/#download) - A Library for Large Linear Classification
* [Machine Learning Module](https://github.com/josephmisiti/machine-learning-module) - Class on machine w/ PDF,lectures,code
#### Data Analysis / Data Visualization
* [matlab_gbl](https://www.cs.purdue.edu/homes/dgleich/packages/matlab_bgl/) - MatlabBGL is a Matlab package for working with graphs.
* [gamic](http://www.mathworks.com/matlabcentral/fileexchange/24134-gaimc---graph-algorithms-in-matlab-code) - Efficient pure-Matlab implementations of graph algorithms to complement MatlabBGL's mex functions.
## Julia
#### General-Purpose Machine Learning
* [PGM](https://github.com/JuliaStats/PGM.jl) - A Julia framework for probabilistic graphical models.
* [DA](https://github.com/trthatcher/DA.jl) - Julia package for Regularized Discriminant Analysis
* [Regression](https://github.com/lindahua/Regression.jl) - Algorithms for regression analysis (e.g. linear regression and logistic regression)
* [Local Regression](https://github.com/dcjones/Loess.jl) - Local regression, so smooooth!
* [Naive Bayes](https://github.com/nutsiepully/NaiveBayes.jl) - Simple Naive Bayes implementation in Julia
* [Mixed Models](https://github.com/dmbates/MixedModels.jl) - A Julia package for fitting (statistical) mixed-effects models
* [Simple MCMC](https://github.com/fredo-dedup/SimpleMCMC.jl) - basic mcmc sampler implemented in Julia
* [Distance](https://github.com/JuliaStats/Distance.jl) - Julia module for Distance evaluation
* [Decision Tree](https://github.com/bensadeghi/DecisionTree.jl) - Decision Tree Classifier and Regressor
* [Neural](https://github.com/compressed/neural.jl) - A neural network in Julia
* [MCMC](https://github.com/doobwa/MCMC.jl) - MCMC tools for Julia
* [GLM](https://github.com/JuliaStats/GLM.jl) - Generalized linear models in Julia
* [Online Learning](https://github.com/lendle/OnlineLearning.jl)
* [GLMNet](https://github.com/simonster/GLMNet.jl) - Julia wrapper for fitting Lasso/ElasticNet GLM models using glmnet
* [Clustering](https://github.com/JuliaStats/Clustering.jl) - Basic functions for clustering data: k-means, dp-means, etc.
* [SVM](https://github.com/JuliaStats/SVM.jl) - SVM's for Julia
* [Kernal Density](https://github.com/JuliaStats/KernelDensity.jl) - Kernel density estimators for julia
* [Dimensionality Reduction](https://github.com/JuliaStats/DimensionalityReduction.jl) - Methods for dimensionality reduction
* [NMF](https://github.com/JuliaStats/NMF.jl) - A Julia package for non-negative matrix factorization
#### Natural Language Processing
* [Topic Models](https://github.com/slycoder/TopicModels.jl) - TopicModels for Julia
* [Text Analysis](https://github.com/johnmyleswhite/TextAnalysis.jl) - Julia package for text analysis
#### Data Analysis / Data Visualization
* [Graph Layout](https://github.com/IainNZ/GraphLayout.jl) - Graph layout algorithms in pure Julia
* [Data Frames Meta](https://github.com/JuliaStats/DataFramesMeta.jl) - Metaprogramming tools for DataFrames
* [Julia Data](https://github.com/nfoti/JuliaData) - library for working with tabular data in Julia
* [Data Read](https://github.com/WizardMac/DataRead.jl) - Read files from Stata, SAS, and SPSS
* [Hypothesis Tests](https://github.com/JuliaStats/HypothesisTests.jl) - Hypothesis tests for Julia
* [Gladfly](https://github.com/dcjones/Gadfly.jl) - Crafty statistical graphics for Julia.
* [Stats](https://github.com/johnmyleswhite/stats.jl) - Statistical tests for Julia
* [RDataSets](https://github.com/johnmyleswhite/RDatasets.jl) - Julia package for loading many of the data sets available in R
* [DataFrames](https://github.com/JuliaStats/DataFrames.jl) - library for working with tabular data in Julia
* [Distributions](https://github.com/JuliaStats/Distributions.jl) - A Julia package for probability distributions and associated functions.
* [Data Arrays](https://github.com/JuliaStats/DataArrays.jl) - Data structures that allow missing values
* [Time Series](https://github.com/JuliaStats/TimeSeries.jl) - Time series toolkit for Julia
* [Sampling](https://github.com/JuliaStats/Sampling.jl) - Basic sampling algorithms for Julia
#### Misc Stuff / Presentations
* [JuliaCon Presentations](https://github.com/JuliaCon/presentations) - Presentations for JuliaCon
* [SignalProcessing](https://github.com/davidavdav/SignalProcessing) - Signal Processing tools for Julia
* [Images](https://github.com/timholy/Images.jl) - An image library for Julia
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## Credits
* Some of the python libraries were cut-and-pasted from [vinta](https://github.com/vinta/awesome-python)