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changes to moses-parallel.pl to make it work. /Thomas Meyer

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This commit is contained in:
Hieu Hoang 2013-12-05 12:23:40 +00:00
parent d3301fa1a3
commit 19aa8c1056
1 changed files with 21 additions and 0 deletions
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21
scripts/generic/moses-parallel.pl
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@ -23,6 +23,11 @@ use strict;
#parameters for submiiting processes through Sun GridEngine
my $queueparameters="";
#SGE-make-it-work:
# my $queueparameters="-l q1w -l mem_free=0.5G -hard";
# my $queueparameters="-l q1dm -pe pe_mth 2 -hard";
# etc.
# look for the correct pwdcmd
my $pwdcmd = getPwdCmd();
@ -74,6 +79,9 @@ my $qsubname="MOSES";
my $old_sge = 0; # assume old Sun Grid Engine (<6.0) where qsub does not
# implement -sync and -b
#SGE-make-it-work:
# my $old_sge = "1";
#######################
# Command line options processing
sub init(){
@ -563,10 +571,23 @@ sub preparing_script(){
$scriptheader.="\#\! /bin/bash\n\n";
# !!! this is useless. qsub ignores the first line of the script.
# Pass '-S /bin/bash' to qsub instead.
#SGE-make-it-work:
# $scriptheader.="## Sun's Grid Engine parameters\n";
# $scriptheader.="# ... (see 'man qsub' for complete documentation)\n";
# $scriptheader.="# ... job name\n";
# $scriptheader.="#\$ -N mert-$qsubname\n";
# $scriptheader.="# ... make sure to use proper shell\n";
# $scriptheader.="#\$ -S /bin/bash\n";
# $scriptheader.="# ... e-mail address to send notifications\n";
# $scriptheader.="#\$ -M ww.xx\@yy.zz\n\n";
$scriptheader.="uname -a\n\n";
$scriptheader.="ulimit -c 0\n\n"; # avoid coredumps
$scriptheader.="cd $workingdir\n\n";
open (OUT, "> ${jobscript}${idx}.bash");
print OUT $scriptheader;
my $inputmethod = $feed_moses_via_stdin ? "<" : "-input-file";