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merge_alignment.py is in scripts, not in bin
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@ -248,7 +248,7 @@ foreach my $step (@step_conf) {
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# supporting binaries from other packages
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my $MKCLS = "$_EXTERNAL_BINDIR/mkcls";
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my $MGIZA_MERGE_ALIGN = "$_EXTERNAL_BINDIR/merge_alignment.py";
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my $MGIZA_MERGE_ALIGN = "$_EXTERNAL_BINDIR/../scripts/merge_alignment.py";
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my $GIZA;
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my $SNT2COOC;
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