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4ffaae925f
* CSV now renames duplicate ingest headers * Fix broken test * xlsx ingester now handles duplicate col names * Update CHANGELOG * Additional tests for ingest.column.rename * Removed dead comment in grammar
719 lines
18 KiB
Go
719 lines
18 KiB
Go
package driver
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import (
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"bytes"
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"context"
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"database/sql"
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"fmt"
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"math"
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"reflect"
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"strings"
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"text/template"
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"time"
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"github.com/neilotoole/sq/libsq/core/loz"
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"github.com/neilotoole/sq/libsq/core/options"
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"github.com/neilotoole/sq/libsq/core/record"
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"github.com/neilotoole/sq/libsq/core/lg/lgm"
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"github.com/neilotoole/sq/libsq/core/lg"
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"go.uber.org/atomic"
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"github.com/neilotoole/sq/libsq/core/errz"
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"github.com/neilotoole/sq/libsq/core/kind"
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"github.com/neilotoole/sq/libsq/core/sqlz"
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"github.com/neilotoole/sq/libsq/core/stringz"
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)
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// NewRecordFunc is invoked on a query result row (scanRow) to
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// normalize and standardize the data, returning a new record.
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// The provided scanRow arg is available for reuse after this
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// func returns.
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//
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// Ultimately rec should only contain:
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//
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// nil, *int64, *bool, *float64, *string, *[]byte, *time.Time
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//
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// Thus a func instance might unbox sql.NullString et al, or deal
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// with any driver specific quirks.
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type NewRecordFunc func(scanRow []any) (rec record.Record, err error)
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// InsertMungeFunc is invoked on vals before insertion (or
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// update, despite the name). Note that InsertMungeFunc operates
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// on the vals slice, while NewRecordFunc returns a new slice.
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type InsertMungeFunc func(vals record.Record) error
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// StmtExecFunc is provided by driver implementations to wrap
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// execution of a prepared statement. Typically the func will
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// perform some driver-specific action, such as managing
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// retryable errors.
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type StmtExecFunc func(ctx context.Context, args ...any) (affected int64, err error)
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// NewStmtExecer returns a new StmtExecer instance. The caller is responsible
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// for invoking Close on the returned StmtExecer.
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func NewStmtExecer(stmt *sql.Stmt, mungeFn InsertMungeFunc, execFn StmtExecFunc, destMeta record.Meta,
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) *StmtExecer {
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return &StmtExecer{
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stmt: stmt,
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mungeFn: mungeFn,
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execFn: execFn,
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destMeta: destMeta,
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}
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}
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// StmtExecer encapsulates the elements required to execute
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// a SQL statement. Typically the statement is an INSERT.
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// The Munge method should be applied to each
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// row of values prior to invoking Exec. The caller
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// is responsible for invoking Close.
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type StmtExecer struct {
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stmt *sql.Stmt
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mungeFn InsertMungeFunc
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execFn StmtExecFunc
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destMeta record.Meta
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}
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// DestMeta returns the record.Meta for the destination table columns.
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func (x *StmtExecer) DestMeta() record.Meta {
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return x.destMeta
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}
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// Munge should be applied to each row of values prior
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// to inserting invoking Exec.
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func (x *StmtExecer) Munge(rec []any) error {
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if x.mungeFn == nil {
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return nil
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}
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err := x.mungeFn(rec)
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if err != nil {
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return err
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}
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return nil
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}
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// Exec executes the statement. The caller should invoke Munge on
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// each row of values prior to passing those values to Exec.
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func (x *StmtExecer) Exec(ctx context.Context, args ...any) (affected int64, err error) {
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return x.execFn(ctx, args...)
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}
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// Close closes x's statement.
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func (x *StmtExecer) Close() error {
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return errz.Err(x.stmt.Close())
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}
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// NewRecordFromScanRow iterates over the elements of the row slice
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// from rows.Scan, and returns a new (record) slice, replacing any
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// wrapper types such as sql.NullString with the unboxed value,
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// and other similar sanitization. For example, it will
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// make a copy of any sql.RawBytes. The row slice
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// can be reused by rows.Scan after this function returns.
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//
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// Any row elements specified in skip will not be processed; the
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// value will be copied directly from row[i] into rec[i]. If any
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// element of row otherwise cannot be processed, its value is
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// copied directly into rec, and its index is returned in skipped.
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// The caller must take appropriate action to deal with all
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// elements of rec listed in skipped.
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//
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// REVISIT: Do we need the skip mechanism at all?
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//
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//nolint:funlen,gocognit,gocyclo,cyclop
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func NewRecordFromScanRow(meta record.Meta, row []any, skip []int) (rec record.Record, skipped []int) {
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rec = make([]any, len(row))
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// For convenience, make a map of the skip row indices.
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mSkip := map[int]struct{}{}
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for _, i := range skip {
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mSkip[i] = struct{}{}
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}
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for i := 0; i < len(row); i++ {
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// we're skipping this column, but still need to copy the value.
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if _, ok := mSkip[i]; ok {
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rec[i] = row[i]
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skipped = append(skipped, i)
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continue
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}
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if row[i] == nil {
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rec[i] = nil
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continue
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}
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// Dereference *any before the switch
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col := row[i]
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if a, ok := col.(*any); ok {
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col = *a
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}
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switch col := col.(type) {
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default:
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rec[i] = col
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skipped = append(skipped, i)
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continue
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case nil:
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rec[i] = nil
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case *int64:
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rec[i] = *col
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case int64:
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rec[i] = col
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case *float64:
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rec[i] = *col
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case float64:
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rec[i] = col
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case *bool:
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rec[i] = *col
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case bool:
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rec[i] = col
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case *string:
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rec[i] = *col
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case string:
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rec[i] = col
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case *[]byte:
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if col == nil || *col == nil {
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rec[i] = nil
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continue
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}
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if meta[i].Kind() != kind.Bytes {
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// We only want to use []byte for KindByte. Otherwise
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// switch to a string.
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s := string(*col)
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rec[i] = s
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continue
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}
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if len(*col) == 0 {
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rec[i] = []byte{}
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} else {
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dest := make([]byte, len(*col))
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copy(dest, *col)
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rec[i] = dest
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}
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case *sql.NullInt64:
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if col.Valid {
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rec[i] = col.Int64
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} else {
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rec[i] = nil
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}
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case *sql.NullString:
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if col.Valid {
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rec[i] = col.String
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} else {
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rec[i] = nil
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}
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case *sql.RawBytes:
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if col == nil || *col == nil {
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// Explicitly set rec[i] so that its type becomes nil
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rec[i] = nil
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continue
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}
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knd := meta[i].Kind()
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// If RawBytes is of length zero, there's no
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// need to copy.
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if len(*col) == 0 {
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if knd == kind.Bytes {
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rec[i] = []byte{}
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} else {
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// Else treat it as an empty string
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rec[i] = ""
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}
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continue
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}
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dest := make([]byte, len(*col))
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copy(dest, *col)
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if knd == kind.Bytes {
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rec[i] = dest
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} else {
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rec[i] = string(dest)
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}
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case *sql.NullFloat64:
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if col.Valid {
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rec[i] = col.Float64
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} else {
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rec[i] = nil
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}
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case *sql.NullBool:
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if col.Valid {
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rec[i] = col.Bool
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} else {
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rec[i] = nil
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}
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case *sqlz.NullBool:
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// This custom NullBool type is only used by sqlserver at this time.
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// Possibly this code should skip this item, and allow
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// the sqlserver munge func handle the conversion?
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if col.Valid {
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rec[i] = col.Bool
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} else {
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rec[i] = nil
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}
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case *sql.NullTime:
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if col.Valid {
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rec[i] = col.Time
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} else {
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rec[i] = nil
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}
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case *time.Time:
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rec[i] = *col
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case *int:
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rec[i] = int64(*col)
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case *int8:
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rec[i] = int64(*col)
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case *int16:
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rec[i] = int64(*col)
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case *int32:
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rec[i] = int64(*col)
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case *uint:
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rec[i] = int64(*col)
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case *uint8:
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rec[i] = int64(*col)
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case *uint16:
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rec[i] = int64(*col)
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case *uint32:
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rec[i] = int64(*col)
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case *uint64:
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rec[i] = int64(*col)
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case *float32:
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rec[i] = float64(*col)
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}
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if rec[i] != nil && meta[i].Kind() == kind.Decimal {
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// Drivers use varying types for numeric/money/decimal.
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// We want to standardize on string.
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switch col := rec[i].(type) {
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case *string:
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// Do nothing, it's already string
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case *[]byte:
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rec[i] = string(*col)
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case *float64:
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rec[i] = stringz.FormatFloat(*col)
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default:
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// Shouldn't happen
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rec[i] = fmt.Sprintf("%v", col)
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}
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}
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}
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return rec, skipped
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}
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// Comma is the comma string to use in SQL queries.
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const Comma = ", "
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// PrepareInsertStmt prepares an insert statement using
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// driver-specific syntax from drvr. numRows specifies
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// how many rows of values are inserted by each execution of
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// the insert statement (1 row being the prototypical usage).
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func PrepareInsertStmt(ctx context.Context, drvr SQLDriver, db sqlz.Preparer, destTbl string, destCols []string,
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numRows int,
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) (stmt *sql.Stmt, err error) {
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const stmtTpl = `INSERT INTO %s (%s) VALUES %s`
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if numRows <= 0 {
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return nil, errz.Errorf("numRows must be a positive integer but got %d", numRows)
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}
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dialect := drvr.Dialect()
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tblNameQuoted := dialect.Enquote(destTbl)
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colNamesQuoted := loz.Apply(destCols, dialect.Enquote)
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colsJoined := strings.Join(colNamesQuoted, Comma)
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placeholders := dialect.Placeholders(len(colNamesQuoted), numRows)
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query := fmt.Sprintf(stmtTpl, tblNameQuoted, colsJoined, placeholders)
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stmt, err = db.PrepareContext(ctx, query)
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return stmt, errz.Err(err)
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}
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// BatchInsert encapsulates inserting records to a db. The caller sends
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// (munged) records on recCh; the record values should be munged via
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// the Munge method prior to sending. Records are written to db in
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// batches of batchSize as passed to NewBatchInsert (the final batch may
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// be less than batchSize). The caller must close recCh to indicate that
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// all records have been sent, or cancel the ctx passed to
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// NewBatchInsert to stop the insertion goroutine. Any error is returned
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// on errCh. Processing is complete when errCh is closed: the caller
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// must select on errCh.
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type BatchInsert struct {
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// RecordCh is the channel that the caller sends records on. The
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// caller must close RecordCh when done.
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RecordCh chan<- []any
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// ErrCh returns any errors that occur during insert. ErrCh is
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// closed by BatchInsert when processing is complete.
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ErrCh <-chan error
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written *atomic.Int64
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mungeFn InsertMungeFunc
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}
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// Written returns the number of records inserted (at the time of
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// invocation). For the final value, Written should be invoked after
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// ErrCh is closed.
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func (bi *BatchInsert) Written() int64 {
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return bi.written.Load()
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}
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// Munge should be invoked on every record before sending
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// on RecordCh.
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func (bi BatchInsert) Munge(rec []any) error {
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return bi.mungeFn(rec)
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}
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// NewBatchInsert returns a new BatchInsert instance. The internal
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// goroutine is started.
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//
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// Note that the db arg must guarantee a single connection: that is,
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// it must be a sql.Conn or sql.Tx.
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//
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//nolint:gocognit
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func NewBatchInsert(ctx context.Context, drvr SQLDriver, db sqlz.DB,
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destTbl string, destColNames []string, batchSize int,
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) (*BatchInsert, error) {
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log := lg.FromContext(ctx)
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err := requireSingleConn(db)
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if err != nil {
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return nil, err
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}
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recCh := make(chan []any, batchSize*8)
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errCh := make(chan error, 1)
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rowLen := len(destColNames)
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inserter, err := drvr.PrepareInsertStmt(ctx, db, destTbl, destColNames, batchSize)
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if err != nil {
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return nil, err
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}
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bi := &BatchInsert{RecordCh: recCh, ErrCh: errCh, written: atomic.NewInt64(0), mungeFn: inserter.mungeFn}
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go func() {
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// vals holds rows of values as a single slice. That is, vals is
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// a bunch of record fields appended to one big slice to pass
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// as args to the INSERT statement
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vals := make([]any, 0, rowLen*batchSize)
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var rec []any
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var affected int64
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defer func() {
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if inserter != nil {
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if err == nil {
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// If no pre-existing error, any inserter.Close error
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// becomes the error.
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err = errz.Err(inserter.Close())
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} else {
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// If there's already an error, we just log any
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// error from inserter.Close: the pre-existing error
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// is the primary concern.
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lg.WarnIfError(log, lgm.CloseDBStmt, errz.Err(inserter.Close()))
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}
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}
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if err != nil {
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errCh <- err
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}
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close(errCh)
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}()
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for {
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rec = nil
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select {
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case <-ctx.Done():
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err = ctx.Err()
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return
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case rec = <-recCh:
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}
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if rec != nil {
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if len(rec) != rowLen {
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err = errz.Errorf("batch insert: record should have %d values but found %d", rowLen, len(rec))
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return
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}
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vals = append(vals, rec...)
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}
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if len(vals) == 0 {
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// Nothing to do here, we're done
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return
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}
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if len(vals)/rowLen == batchSize { // We've got a full batch to send
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affected, err = inserter.Exec(ctx, vals...)
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if err != nil {
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return
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}
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bi.written.Add(affected)
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if rec == nil {
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// recCh is closed (coincidentally exactly on the
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// batch size), so we're successfully done.
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return
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}
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// reset vals for the next batch
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vals = vals[0:0]
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continue
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}
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if rec != nil {
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// recCh is not closed, so we loop to accumulate more records
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continue
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}
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// If we get this far, it means that rec is nil (indicating
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// no more records), but the number of remaining records
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// to write is less than batchSize. So, we'll need a new
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// inserter to write the remaining records.
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// First, close the existing full-batch-size inserter
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if inserter != nil {
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err = errz.Err(inserter.Close())
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inserter = nil
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if err != nil {
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return
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}
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}
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inserter, err = drvr.PrepareInsertStmt(ctx, db, destTbl, destColNames, len(vals)/rowLen)
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if err != nil {
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return
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}
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affected, err = inserter.Exec(ctx, vals...)
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if err != nil {
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return
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}
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bi.written.Add(affected)
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// We're done
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return
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}
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}()
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return bi, nil
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}
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|
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// MaxBatchRows returns the maximum number of rows allowed for a
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// batch insert for drvr. Note that the returned value may differ
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// for each database driver.
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func MaxBatchRows(drvr SQLDriver, numCols int) int {
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return int(math.Ceil(float64(drvr.Dialect().MaxBatchValues) / float64(numCols)))
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}
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|
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// DefaultInsertMungeFunc returns an InsertMungeFunc
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// that checks the values of rec against destMeta and
|
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// performs necessary munging. For example, if any element
|
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// is a ptr to an empty string and the dest type
|
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// is not of kind Text, the empty string was probably
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// intended to mean nil. This happens when the original
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// source doesn't handle nil, e.g. with CSV, where nil is
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// effectively represented by "".
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//
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|
// The returned InsertMungeFunc accounts for common cases, but it's
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// possible that certain databases will require a custom
|
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// InsertMungeFunc.
|
|
func DefaultInsertMungeFunc(destTbl string, destMeta record.Meta) InsertMungeFunc {
|
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return func(rec record.Record) error {
|
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if len(rec) != len(destMeta) {
|
|
return errz.Errorf("insert record has %d vals but dest table %s has %d cols (%s)",
|
|
len(rec), destTbl, len(destMeta), strings.Join(destMeta.Names(), Comma))
|
|
}
|
|
|
|
for i := range rec {
|
|
nullable, _ := destMeta[i].Nullable()
|
|
if rec[i] == nil && !nullable {
|
|
mungeSetZeroValue(i, rec, destMeta)
|
|
continue
|
|
}
|
|
|
|
if destMeta[i].Kind() == kind.Text {
|
|
// text doesn't need our help
|
|
continue
|
|
}
|
|
|
|
// The dest col kind is something other than text, let's inspect
|
|
// the actual value and check its type.
|
|
switch val := rec[i].(type) {
|
|
default:
|
|
continue
|
|
case string:
|
|
if val == "" {
|
|
if nullable {
|
|
rec[i] = nil
|
|
} else {
|
|
mungeSetZeroValue(i, rec, destMeta)
|
|
}
|
|
}
|
|
// else we let the DB figure it out
|
|
|
|
case *string:
|
|
if *val == "" {
|
|
if nullable {
|
|
rec[i] = nil
|
|
} else {
|
|
mungeSetZeroValue(i, rec, destMeta)
|
|
}
|
|
}
|
|
// else we let the DB figure it out
|
|
}
|
|
}
|
|
return nil
|
|
}
|
|
}
|
|
|
|
// mungeSetZeroValue is invoked when rec[i] is nil, but
|
|
// destMeta[i] is not nullable.
|
|
func mungeSetZeroValue(i int, rec []any, destMeta record.Meta) {
|
|
// REVISIT: do we need to do special handling for kind.Datetime
|
|
// and kind.Time (e.g. "00:00" for time)?
|
|
z := reflect.Zero(destMeta[i].ScanType()).Interface()
|
|
rec[i] = z
|
|
}
|
|
|
|
// OptResultColRename transforms a column name returned from the DB.
|
|
var OptResultColRename = options.NewString(
|
|
"result.column.rename",
|
|
"",
|
|
0,
|
|
"{{.Name}}{{with .Recurrence}}_{{.}}{{end}}",
|
|
func(s string) error {
|
|
return stringz.ValidTemplate("result.column.rename", s)
|
|
},
|
|
"Template to rename result columns",
|
|
`This Go text template is executed on the column names returned
|
|
from the DB. Its primary purpose is to rename duplicate column names. For
|
|
example, given a query that results in this SQL:
|
|
|
|
SELECT * FROM actor JOIN film_actor ON actor.actor_id = film_actor.actor_id
|
|
|
|
The returned result set will have these column names:
|
|
|
|
actor_id, first_name, last_name, last_update, actor_id, film_id, last_update
|
|
|- from "actor" -| |- from "film_actor" -|
|
|
|
|
Note the duplicate "actor_id" and "last_update" column names. When output in a
|
|
format (such as JSON) that doesn't permit duplicate keys, only one of each
|
|
duplicate column could appear.
|
|
|
|
The fields available in the template are:
|
|
|
|
.Name column name
|
|
.Index zero-based index of the column in the result set
|
|
.Recurrence nth recurrence of the colum name in the result set
|
|
|
|
For a unique column name, e.g. "first_name" above, ".Recurrence" will be 0.
|
|
For duplicate column names, ".Recurrence" will be 0 for the first instance,
|
|
then 1 for the next instance, and so on.
|
|
|
|
The default template renames the columns to:
|
|
|
|
actor_id, first_name, last_name, last_update, actor_id_1, film_id, last_update_1`,
|
|
)
|
|
|
|
// MungeResultColNames transforms column names, per the template defined
|
|
// in the option driver.OptResultColRename found on the context.
|
|
// This mechanism is used to deduplicate column names, as can happen in
|
|
// in "SELECT * FROM ... JOIN" situations. For example, if the result set
|
|
// has columns [actor_id, first_name, actor_id], the columns might be
|
|
// transformed to [actor_id, first_name, actor_id_1].
|
|
//
|
|
// MungeResultColNames should be invoked by each impl of SQLDriver.RecordMeta
|
|
// before returning the record.Meta.
|
|
//
|
|
// See also: MungeIngestColNames.
|
|
func MungeResultColNames(ctx context.Context, ogColNames []string) (colNames []string, err error) {
|
|
if len(ogColNames) == 0 {
|
|
return ogColNames, nil
|
|
}
|
|
|
|
o := options.FromContext(ctx)
|
|
tplText := OptResultColRename.Get(o)
|
|
if tplText == "" {
|
|
return ogColNames, nil
|
|
}
|
|
|
|
tpl, err := stringz.NewTemplate(OptResultColRename.Key(), tplText)
|
|
if err != nil {
|
|
return nil, errz.Wrap(err, "config: ")
|
|
}
|
|
|
|
return doMungeColNames(tpl, ogColNames)
|
|
}
|
|
|
|
func doMungeColNames(tpl *template.Template, ogColNames []string) (colNames []string, err error) {
|
|
cols := make([]colMungeData, len(ogColNames))
|
|
for i := range ogColNames {
|
|
data := colMungeData{
|
|
Name: ogColNames[i],
|
|
Index: i,
|
|
}
|
|
|
|
for j := 0; j < i; j++ {
|
|
if ogColNames[j] == data.Name {
|
|
data.Recurrence++
|
|
}
|
|
}
|
|
|
|
cols[i] = data
|
|
}
|
|
|
|
colNames = make([]string, len(cols))
|
|
buf := &bytes.Buffer{}
|
|
for i := range cols {
|
|
if err = tpl.Execute(buf, cols[i]); err != nil {
|
|
return nil, err
|
|
}
|
|
|
|
colNames[i] = buf.String()
|
|
buf.Reset()
|
|
}
|
|
|
|
return colNames, nil
|
|
}
|
|
|
|
// colMungeData is the struct passed to the template from OptResultColRename,
|
|
// used in MungeResultColNames.
|
|
type colMungeData struct {
|
|
// Name is the original column name.
|
|
Name string
|
|
|
|
// Index is the column index.
|
|
Index int
|
|
|
|
// Recurrence is the count of times this column name has already
|
|
// appeared in the list of column names. If the column name is unique,
|
|
// this value is zero.
|
|
Recurrence int
|
|
}
|