git.iko.soy/typeable/nixpkgs
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pythonPackages.pysam: Disable failing tests unrelated to packaging

These will be fixed upstream and are due to format changes introduced in samtools and htslib 1.11

commit459c5ec3b19767b96ef11225d60b0964c467f3b1 authorRenato Alves <alves.rjc@gmail.com> dateThu 29 Oct 2020, 16:20 (6 years ago) parent6e19ed0
1 file changed+9−3
compare with master
unifiedsplit
pkgs/development/python-modules/pysam/default.nix+9−3
pkgs/development/python-modules/pysam/default.nix+9−3
@@ -80,13 +80,19 @@ buildPythonPackage rec {
8080 --deselect tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected \
8181 --deselect tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works \
8282 --deselect tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected \
83− --deselect tests/AlignmentFile_test.py::TestIO::testBAM2SAM \
84− --deselect tests/AlignmentFile_test.py::TestIO::testSAM2BAM \
85− --deselect tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile \
8683 --deselect tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile \
8784 --deselect tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader \
8885 --deselect tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader \
86+ --deselect tests/AlignmentFile_test.py::TestIO::testBAM2BAM \
87+ --deselect tests/AlignmentFile_test.py::TestIO::testBAM2CRAM \
88+ --deselect tests/AlignmentFile_test.py::TestIO::testBAM2SAM \
89+ --deselect tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject \
90+ --deselect tests/AlignmentFile_test.py::TestIO::testOpenFromFilename \
91+ --deselect tests/AlignmentFile_test.py::TestIO::testSAM2BAM \
92+ --deselect tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile \
93+ --deselect tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate \
8994 --deselect tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing \
95+ --deselect tests/compile_test.py::BAMTest::testCount \
9096 tests/
9197 '';
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