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n3: init at 1.0.20

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This commit is contained in:
Ben Darwin 2017-09-25 13:14:59 -04:00
parent f532f9f5f4
commit 54c543b03b
2 changed files with 41 additions and 0 deletions
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37
pkgs/applications/science/biology/N3/default.nix Normal file
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@ -0,0 +1,37 @@
{ stdenv, fetchFromGitHub, cmake, makeWrapper,
perl, MNI-Perllib, GetoptTabular,
libminc, EBTKS }:
stdenv.mkDerivation rec {
pname = "N3";
name = "${pname}-1.0.20";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "2fdd939f0f2b24a4039bc6a8ade4a190a1d8e75d";
sha256 = "13z21c4r09hna3q1csvcn4i7ws5ixbdaja6ch421xv6nydjh2w5g";
};
nativeBuildInputs = [ cmake makeWrapper ];
buildInputs = [ libminc EBTKS ];
propagatedBuildInputs = [ perl MNI-Perllib GetoptTabular ];
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" "-DEBTKS_DIR=${EBTKS}/lib/" ];
checkPhase = "ctest --output-on-failure";
# don't run the tests as they fail at least due to missing program wrappers in this phase ...
postFixup = ''
for p in $out/bin/*; do
wrapProgram $p --prefix PERL5LIB : $PERL5LIB
done
'';
meta = with stdenv.lib; {
homepage = "https://github.com/BIC-MNI/${pname}";
description = "MRI non-uniformity correction for MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
};
}

4
pkgs/top-level/all-packages.nix
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@ -19749,6 +19749,10 @@ with pkgs;
muscle = callPackage ../applications/science/biology/muscle/default.nix { };
n3 = callPackage ../applications/science/biology/N3 {
inherit (perlPackages) perl GetoptTabular MNI-Perllib;
};
neuron = callPackage ../applications/science/biology/neuron {
python = null;
};