ilyakooo0/nixpkgs
1
0
Fork 0
mirror of https://github.com/ilyakooo0/nixpkgs.git synced 2024-10-03 11:07:44 +03:00
Code Issues Projects Releases Wiki Activity

bpp-popgen: init at 2.4.1

Browse Source
This commit is contained in:
Ben Darwin 2020-03-09 22:20:35 -04:00
parent a53b27829c
commit 7f656f3ef6
2 changed files with 37 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

35
pkgs/development/libraries/science/biology/bpp-popgen/default.nix Normal file
View File

@ -0,0 +1,35 @@
{ stdenv, fetchFromGitHub, cmake, bpp-core, bpp-seq }:
stdenv.mkDerivation rec {
pname = "bpp-popgen";
inherit (bpp-core) version;
src = fetchFromGitHub {
owner = "BioPP";
repo = pname;
rev = "v${version}";
sha256 = "0bz0fhrq3dri6a0hvfc3zlvrns8mrzzlnicw5pyfa812gc1qwfvh";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ bpp-core bpp-seq ];
preCheck = ''
export LD_LIBRARY_PATH=$(pwd)/src
'';
postFixup = ''
substituteInPlace $out/lib/cmake/${pname}/${pname}-targets.cmake \
--replace 'set(_IMPORT_PREFIX' '#set(_IMPORT_PREFIX'
'';
# prevents cmake from exporting incorrect INTERFACE_INCLUDE_DIRECTORIES
# of form /nix/store/.../nix/store/.../include,
# probably due to relative vs absolute path issue
doCheck = !stdenv.isDarwin;
meta = bpp-core.meta // {
changelog = "https://github.com/BioPP/bpp-popgen/blob/master/ChangeLog";
};
}

2
pkgs/top-level/all-packages.nix
View File

@ -24394,6 +24394,8 @@ in
bpp-phyl = callPackage ../development/libraries/science/biology/bpp-phyl { };
bpp-popgen = callPackage ../development/libraries/science/biology/bpp-popgen { };
bpp-seq = callPackage ../development/libraries/science/biology/bpp-seq { };
cd-hit = callPackage ../applications/science/biology/cd-hit { };