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nixpkgs/pkgs/applications/science/biology
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R. RyanTM c478b6217f samtools: 1.7 -> 1.8 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/samtools/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/novo2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl help’ got 0 exit code
- found 1.8 with grep in /nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8
- directory tree listing: https://gist.github.com/4673ea3645eb509035dcb386c4ad1da2
2018-04-10 13:04:09 -07:00
..
ants ants: bump version and fix sandboxed build 2017-09-20 18:42:34 -04:00
bcftools bcftools: python/perl is needed for shebangs 2018-04-08 09:35:20 +01:00
bedtools bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
bowtie2 bowtie2: 2.3.4 -> 2.3.4.1 2018-02-25 09:45:04 -08:00
bwa bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
dcm2niix dcm2niix: cmake is native, style 2018-01-15 16:53:28 +10:00
diamond diamond: init at 0.8.36 2017-04-12 13:05:57 +02:00
ecopcr ecopcr: init at 0.8.0 2017-02-06 16:01:08 +01:00
emboss emboss: fix build 2017-03-13 13:15:51 +01:00
freebayes freebayes: clean up build 2017-09-28 00:54:01 +02:00
igv igv: 2.4.9 -> 2.4.10 2018-03-31 08:54:46 -07:00
iv neuron: 7.4 -> 7.5 2017-09-02 16:58:14 -04:00
kallisto kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
minc-tools libminc: fix build after hdf5 upgrade by using hdf5_1_8 2017-12-01 00:37:29 +00:00
mrbayes treewide: Add lots of meta.platforms 2016-08-02 21:42:43 +03:00
muscle muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
ncbi-tools treewide: Always use integers for meta.priority 2017-05-02 01:43:22 -04:00
neuron neuron: 7.4 -> 7.5 2017-09-02 16:58:14 -04:00
paml paml: 4.9c -> 4.9g 2018-03-09 07:22:27 -08:00
picard-tools picard-tools: 2.17.11 -> 2.18.1 2018-03-30 20:27:46 -07:00
platypus platypus: fix platforms metadata (#24666) 2017-04-06 10:10:54 +01:00
plink pkgs: refactor needless quoting of homepage meta attribute (#27809) 2017-08-01 22:03:30 +02:00
plink-ng darwin: Disable another bunch of packages never having built successfully 2017-09-22 19:49:57 +03:00
poretools poretools: version number to commit date 2017-08-18 09:59:26 -04:00
raxml RAxML: init at 8.2.11 (SSE3 & MPI) 2018-02-02 18:31:40 +01:00
samtools samtools: 1.7 -> 1.8 2018-04-10 13:04:09 -07:00
snpeff snpeff: 4.3t -> 4.3q 2018-03-12 16:03:44 +11:00
star star: init at 2.5.3a 2018-01-24 16:07:15 +00:00
varscan varscan: init at 2.4.2 2017-03-08 22:43:49 +01:00
vcftools vcftools: init at 0.1.15 (#31339) 2017-11-16 09:52:56 +02:00