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`git fetch --prune` deletes the local *references* to upstream branches (i.e. entries in `.git/refs/remotes/`), but the local *branches* that tracked them (i.e. entries in `.git/refs/heads/`) are kept.
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git fetch
Download objects and refs from a remote repository.
- Fetch the latest changes from the default remote upstream repository (if set):
git fetch
- Fetch new branches from a specific remote upstream repository:
git fetch {{remote_name}}
- Fetch the latest changes from all remote upstream repositories:
git fetch --all
- Also fetch tags from the remote upstream repository:
git fetch --tags
- Delete local references to remote branches that have been deleted upstream:
git fetch --prune